MD14G1038500.v1.1

Protein of unknown function (DUF3128)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0010339
Physical Location & Seq
Forward (+)
3505666 .. 3512265
6600 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1038500.v1.1.491

Sequence Viewer

Length: 318 bp
ATGTCTTCAATGGAAGAAACACCTTCCCCTCCAAAGCGTCGATTGTCGTGCGCCACCTACTTCGACGCCCTCTGGTTTTGCTATTCTCCGGTGCATCAGATGCAGCAGTATTATAGACTTGGGTCACTTGATAACTGTTCCGGGAAATGGACTTCTCTGGTTGATTGCTTGGTTTTGAAGACGAAGAGGTCATCTGAAGTGCAGGAAATTTTGGAAACTCGGGAGAAAGGCAAGTCTCACGTCTGGACTTTTCGAACTCCAGAAGAAGCATCAGTTAACTGGAAAGAACAATTTGGAGATTTAGATGAAGTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3128

Protein Analysis

106

Amino Acids

12.29

Weight (kDa)

5.42

Isoelectric Point (pI)

64.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PANTS-like PF11326 15 - 79 2.3e-20 Synaptic plasticity regulator PANTS-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25315 AT4G25315 AT4G25315
fragaria_vesca FvH4_3g30110
malus_domestica MD03G1133000.v1.1 MD14G1038500.v1.1
prunus_persica Prupe.6G117700_v2.0.a1
pyrus_communis pycom14g03310
rosa_chinensis RchiOBHm_Chr5g0055601
rosa_laevigata RLG00000034999
rosa_multiflora Rmu_sc0004818.1_g000002
rosa_roxburghii Rroxscaffold_1G00024680
rosa_rugosa Rorug05G0294200 Rorug05G0294300 Rorug05G0294300 Rorug05G0294400
rosa_samantha Rh5AG363600 Rh5BG375700 Rh5CG398200 Rh5DG388900
rosa_wichuraiana Rw5G034210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 187
AcsI RAATTY 1 cut(s) 207
AcuI CTGAAG 1 cut(s) 216
AcyI GRCGYC 1 cut(s) 66
AfiI CCNNNNNNNGG 1 cut(s) 147
AgsI TTSAA 2 cut(s) 9, 178
AjiI CACGTC 1 cut(s) 241
Alw26I GTCTC 1 cut(s) 240
Ama87I CYCGRG 1 cut(s) 219
ApeKI GCWGC 1 cut(s) 103
ApoI RAATTY 1 cut(s) 207
AspLEI GCGC 1 cut(s) 53
AsuC2I CCSGG 1 cut(s) 142
AsuII TTCGAA 1 cut(s) 253
AvaI CYCGRG 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 115
BcgI CGANNNNNNTGC 2 cut(s) 30, 64
BcnI CCSGG 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 240
BisI GCNGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 105
Bme1390I CCNGG 1 cut(s) 142
BmeT110I CYCGRG 1 cut(s) 219
BmgBI CACGTC 1 cut(s) 241
BmrFI CCNGG 1 cut(s) 142
BmsI GCATC 3 cut(s) 90, 103, 278
BoxI GACNNNNGTC 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 185
BpmI CTGGAG 1 cut(s) 243
Bpu14I TTCGAA 1 cut(s) 253
BpuMI CCSGG 1 cut(s) 142
BsaHI GRCGYC 1 cut(s) 66
BsaWI WCCGGW 1 cut(s) 88
Bsc4I CCNNNNNNNGG 1 cut(s) 147
Bse1I ACTGG 1 cut(s) 284
BseLI CCNNNNNNNGG 1 cut(s) 147
BseNI ACTGG 1 cut(s) 284
BseXI GCAGC 1 cut(s) 115
BsgI GTGCAG 1 cut(s) 221
BsiHKCI CYCGRG 1 cut(s) 219
BsiSI CCGG 2 cut(s) 89, 141
BslI CCNNNNNNNGG 1 cut(s) 147
BsmAI GTCTC 1 cut(s) 240
BsoBI CYCGRG 1 cut(s) 219
Bsp119I TTCGAA 1 cut(s) 253
BspT104I TTCGAA 1 cut(s) 253
BsrI ACTGG 1 cut(s) 284
BssNI GRCGYC 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 137
Bst6I CTCTTC 1 cut(s) 179
BstACI GRCGYC 1 cut(s) 66
BstAPI GCANNNNNTGC 1 cut(s) 100
BstBI TTCGAA 1 cut(s) 253
BstHHI GCGC 1 cut(s) 53
BstMAI GTCTC 1 cut(s) 240
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstPAI GACNNNNGTC 1 cut(s) 121
BstSCI CCNGG 1 cut(s) 140
BstV1I GCAGC 1 cut(s) 115
BstV2I GAAGAC 1 cut(s) 185
BtrI CACGTC 1 cut(s) 241
CfoI GCGC 1 cut(s) 53
CseI GACGC 2 cut(s) 26, 74
DrdI GACNNNNNNGTC 1 cut(s) 187
DseDI GACNNNNNNGTC 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 219
FaiI YATR 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 104
Fsp4HI GCNGC 1 cut(s) 104
GlaI GCGC 1 cut(s) 52
GluI GCNGC 1 cut(s) 104
GsuI CTGGAG 1 cut(s) 243
HapII CCGG 2 cut(s) 89, 141
HgaI GACGC 2 cut(s) 26, 74
HhaI GCGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 66
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HpaI GTTAAC 1 cut(s) 277
HpaII CCGG 2 cut(s) 89, 141
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 2 cut(s) 99, 196
Hpy188III TCNNGA 3 cut(s) 221, 244, 260
Hpy8I GTNNAC 1 cut(s) 277
Hpy99I CGWCG 2 cut(s) 42, 68
HpyAV CCTTC 1 cut(s) 33
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 3 cut(s) 94, 103, 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpySE526I ACGT 1 cut(s) 240
Hsp92I GRCGYC 1 cut(s) 66
HspAI GCGC 1 cut(s) 51
KspAI GTTAAC 1 cut(s) 277
LpnPI CCDG 8 cut(s) 58, 102, 143, 154, 188, 229, 265, 273
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 3 cut(s) 90, 103, 278
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 123
MboII GAAGA 4 cut(s) 26, 190, 196, 275
MluCI AATT 2 cut(s) 207, 290
MnlI CCTC 3 cut(s) 39, 80, 180
MseI TTAA 1 cut(s) 276
MspI CCGG 2 cut(s) 89, 141
MspR9I CCNGG 1 cut(s) 142
MwoI GCNNNNNNNGC 1 cut(s) 100
NciI CCSGG 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 123
NspV TTCGAA 1 cut(s) 253
PfoI TCCNGGA 1 cut(s) 140
PkrI GCNGC 1 cut(s) 105
PshAI GACNNNNGTC 1 cut(s) 121
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 1 cut(s) 104
ScrFI CCNGG 1 cut(s) 142
SetI ASST 4 cut(s) 25, 59, 191, 243
SfaNI GCATC 3 cut(s) 90, 103, 278
SfuI TTCGAA 1 cut(s) 253
Sse9I AATT 2 cut(s) 207, 290
StyD4I CCNGG 1 cut(s) 140
TaaI ACNGT 1 cut(s) 137
TaiI ACGT 1 cut(s) 243
TaqI TCGA 3 cut(s) 40, 63, 253
TasI AATT 2 cut(s) 207, 290
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TseFI GTSAC 1 cut(s) 123
TseI GCWGC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 123
XapI RAATTY 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.