RLG00000034999

Protein of unknown function (DUF3128)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0010339
Physical Location & Seq
Reverse (-)
58936364 .. 58940600
4237 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034999

Sequence Viewer

Length: 636 bp
ATGTTTCACTTCCATACAGTTGTATGTTACAGATGGTTTGCCCAAGTGACAAGTAGCATCATAAAGAGGATCCGCGGCGCTAACAAGCTCGCGTCGCTCCGGCCGCCGTCACGTGCAAAGCCGACGCCGTCGTCCTCTGAATTTGGTGTTGGTGTGCTTCCGGATCGCATTCTCTGTGTAGATCCGAGCGCTGTCGGCGTTTCTCGGTATTTCCCCATCGACGTTCCTCGCGTTCTCGTGCTCCTTCTCCGCTTGCCTCGGCCTCGTCGTCTCCCCAAGGAAGGCAGAGTCCCTCGATCTGTTGAGAGAGGCAGAGTCATGTCTTCAGGCGAAGAAGTCTCTTCGGTTTCAAAGCGTACCTTATCGTGCTCCACCTGCTTTGACGCTCTCTGGTTTTGCTATTCTCCAGTTCATCAGATGCAGCAATACTATAGGCTTGGGACACTTGATAACTGTGGTGGGAAATGGAGTGCTCTTGTGGATTGTTTAACTTTGAAGACGAAGCGGTCAGCTGAAGTGCAGGAAATTTTGGAGTCTCGTGAGAAAGCCAAGGCTCACATCTGGACTTTTCGAACCCCAGAAGAAGCATCAAGAAATTGGAAAGAACAATTTGGACATTTAGATGACATGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3128

Protein Analysis

212

Amino Acids

24.1

Weight (kDa)

9.67

Isoelectric Point (pI)

56.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PANTS-like PF11326 121 - 185 1.6e-19 Synaptic plasticity regulator PANTS-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25315 AT4G25315 AT4G25315
fragaria_vesca FvH4_3g30110
malus_domestica MD03G1133000.v1.1 MD14G1038500.v1.1
prunus_persica Prupe.6G117700_v2.0.a1
pyrus_communis pycom14g03310
rosa_chinensis RchiOBHm_Chr5g0055601
rosa_laevigata RLG00000034999
rosa_multiflora Rmu_sc0004818.1_g000002
rosa_roxburghii Rroxscaffold_1G00024680
rosa_rugosa Rorug05G0294200 Rorug05G0294300 Rorug05G0294300 Rorug05G0294400
rosa_samantha Rh5AG363600 Rh5BG375700 Rh5CG398200 Rh5DG388900
rosa_wichuraiana Rw5G034210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 383
AasI GACNNNNNNGTC 2 cut(s) 130, 505
Acc36I ACCTGC 1 cut(s) 383
AccII CGCG 3 cut(s) 75, 92, 231
AccIII TCCGGA 1 cut(s) 160
AciI CCGC 5 cut(s) 73, 75, 104, 250, 505
AclWI GGATC 4 cut(s) 64, 77, 171, 176
AcoI YGGCCR 1 cut(s) 101
AcsI RAATTY 2 cut(s) 140, 525
AcuI CTGAAG 2 cut(s) 309, 534
AcvI CACGTG 1 cut(s) 113
AcyI GRCGYC 1 cut(s) 125
AfaI GTAC 1 cut(s) 358
AfeI AGCGCT 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 2 cut(s) 351, 496
AjuI GAANNNNNNNTTGG 2 cut(s) 132, 164
AluBI AGCT 2 cut(s) 88, 512
AluI AGCT 2 cut(s) 88, 512
Alw21I GWGCWC 3 cut(s) 243, 371, 475
Alw26I GTCTC 3 cut(s) 275, 343, 540
AlwI GGATC 4 cut(s) 64, 77, 171, 176
Aor13HI TCCGGA 1 cut(s) 160
Aor51HI AGCGCT 1 cut(s) 190
AoxI GGCC 2 cut(s) 101, 260
ApeKI GCWGC 1 cut(s) 421
ApoI RAATTY 2 cut(s) 140, 525
AspLEI GCGC 2 cut(s) 80, 191
AsuII TTCGAA 1 cut(s) 571
BamHI GGATCC 1 cut(s) 69
BauI CACGAG 2 cut(s) 236, 537
BbrPI CACGTG 1 cut(s) 113
BbsI GAAGAC 2 cut(s) 315, 503
Bbv12I GWGCWC 3 cut(s) 243, 371, 475
BbvI GCAGC 1 cut(s) 433
BccI CCATC 2 cut(s) 27, 224
BceAI ACGGC 2 cut(s) 91, 112
BcoDI GTCTC 3 cut(s) 275, 343, 540
BfmI CTRYAG 1 cut(s) 430
BfoI RGCGCY 2 cut(s) 81, 192
BfuAI ACCTGC 1 cut(s) 383
BisI GCNGC 3 cut(s) 76, 104, 422
BlsI GCNGC 3 cut(s) 77, 105, 423
BmiI GGNNCC 1 cut(s) 71
BmsI GCATC 3 cut(s) 66, 408, 596
BpiI GAAGAC 2 cut(s) 315, 503
BpmI CTGGAG 1 cut(s) 390
Bpu14I TTCGAA 1 cut(s) 571
BsaAI YACGTR 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 125
BsaJI CCNNGG 4 cut(s) 73, 257, 276, 549
BsaWI WCCGGW 1 cut(s) 160
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 407
BseAI TCCGGA 1 cut(s) 160
BseDI CCNNGG 4 cut(s) 73, 257, 276, 549
BseLI CCNNNNNNNGG 1 cut(s) 281
BseNI ACTGG 1 cut(s) 407
BseX3I CGGCCG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 433
BsgI GTGCAG 1 cut(s) 539
Bsh1236I CGCG 3 cut(s) 75, 92, 231
Bsh1285I CGRYCG 1 cut(s) 104
BshFI GGCC 2 cut(s) 103, 262
BsiEI CGRYCG 1 cut(s) 104
BsiHKAI GWGCWC 3 cut(s) 243, 371, 475
BsiSI CCGG 2 cut(s) 100, 161
BslFI GGGAC 2 cut(s) 275, 454
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 3 cut(s) 275, 343, 540
BsmBI CGTCTC 1 cut(s) 275
BsmFI GGGAC 2 cut(s) 275, 454
BsmI GAATGC 1 cut(s) 168
BsnI GGCC 2 cut(s) 103, 262
Bsp119I TTCGAA 1 cut(s) 571
Bsp1286I GDGCHC 3 cut(s) 243, 371, 475
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 4 cut(s) 69, 163, 181, 296
BspACI CCGC 5 cut(s) 73, 75, 104, 250, 505
BspANI GGCC 2 cut(s) 103, 262
BspEI TCCGGA 1 cut(s) 160
BspFNI CGCG 3 cut(s) 75, 92, 231
BspLI GGNNCC 1 cut(s) 71
BspMI ACCTGC 1 cut(s) 383
BspPI GGATC 4 cut(s) 64, 77, 171, 176
BspT104I TTCGAA 1 cut(s) 571
BsrI ACTGG 1 cut(s) 407
BssECI CCNNGG 4 cut(s) 73, 257, 276, 549
BssMI GATC 4 cut(s) 69, 163, 181, 296
BssNI GRCGYC 1 cut(s) 125
BssSI CACGAG 2 cut(s) 236, 537
BssT1I CCWWGG 2 cut(s) 276, 549
Bst2BI CACGAG 2 cut(s) 236, 537
Bst4CI ACNGT 2 cut(s) 19, 455
Bst6I CTCTTC 1 cut(s) 346
BstACI GRCGYC 1 cut(s) 125
BstBAI YACGTR 1 cut(s) 113
BstBI TTCGAA 1 cut(s) 571
BstC8I GCNNGC 2 cut(s) 90, 254
BstDSI CCRYGG 1 cut(s) 73
BstFNI CGCG 3 cut(s) 75, 92, 231
BstH2I RGCGCY 2 cut(s) 81, 192
BstHHI GCGC 2 cut(s) 80, 191
BstKTI GATC 4 cut(s) 72, 166, 184, 299
BstMAI GTCTC 3 cut(s) 275, 343, 540
BstMBI GATC 4 cut(s) 69, 163, 181, 296
BstMCI CGRYCG 1 cut(s) 104
BstMWI GCNNNNNNNGC 4 cut(s) 94, 103, 195, 375
BstSFI CTRYAG 1 cut(s) 430
BstUI CGCG 3 cut(s) 75, 92, 231
BstV1I GCAGC 1 cut(s) 433
BstV2I GAAGAC 2 cut(s) 315, 503
BstX2I RGATCY 2 cut(s) 69, 181
BstYI RGATCY 2 cut(s) 69, 181
BstZI CGGCCG 1 cut(s) 101
BsuRI GGCC 2 cut(s) 103, 262
BtgI CCRYGG 1 cut(s) 73
BveI ACCTGC 1 cut(s) 383
Cac8I GCNNGC 2 cut(s) 90, 254
CfoI GCGC 2 cut(s) 80, 191
Cfr42I CCGCGG 1 cut(s) 76
CseI GACGC 3 cut(s) 81, 133, 392
Csp6I GTAC 1 cut(s) 357
CspCI CAANNNNNGTGG 2 cut(s) 361, 396
CviAII CATG 2 cut(s) 319, 628
CviJI RGCY 8 cut(s) 88, 103, 121, 262, 436, 512, 548, 554
CviKI_1 RGCY 8 cut(s) 88, 103, 121, 262, 436, 512, 548, 554
CviQI GTAC 1 cut(s) 357
DpnI GATC 4 cut(s) 71, 165, 183, 298
DpnII GATC 4 cut(s) 69, 163, 181, 296
DrdI GACNNNNNNGTC 2 cut(s) 130, 505
DseDI GACNNNNNNGTC 2 cut(s) 130, 505
EaeI YGGCCR 1 cut(s) 101
EagI CGGCCG 1 cut(s) 101
Eam1104I CTCTTC 1 cut(s) 346
EarI CTCTTC 1 cut(s) 346
EclXI CGGCCG 1 cut(s) 101
Eco130I CCWWGG 2 cut(s) 276, 549
Eco47III AGCGCT 1 cut(s) 190
Eco52I CGGCCG 1 cut(s) 101
Eco57I CTGAAG 2 cut(s) 309, 534
Eco72I CACGTG 1 cut(s) 113
EcoT14I CCWWGG 2 cut(s) 276, 549
ErhI CCWWGG 2 cut(s) 276, 549
Esp3I CGTCTC 1 cut(s) 275
FaeI CATG 2 cut(s) 322, 631
FaiI YATR 6 cut(s) 15, 25, 62, 320, 432, 629
FalI AAGNNNNNCTT 2 cut(s) 344, 376
FaqI GGGAC 2 cut(s) 275, 454
FatI CATG 2 cut(s) 318, 627
Fnu4HI GCNGC 3 cut(s) 76, 104, 422
Fsp4HI GCNGC 3 cut(s) 76, 104, 422
GlaI GCGC 2 cut(s) 79, 190
GluI GCNGC 3 cut(s) 76, 104, 422
GsuI CTGGAG 1 cut(s) 390
HaeII RGCGCY 2 cut(s) 81, 192
HaeIII GGCC 2 cut(s) 103, 262
HapII CCGG 2 cut(s) 100, 161
HgaI GACGC 3 cut(s) 81, 133, 392
HhaI GCGC 2 cut(s) 80, 191
Hin1I GRCGYC 1 cut(s) 125
Hin1II CATG 2 cut(s) 322, 631
Hin6I GCGC 2 cut(s) 78, 189
HinP1I GCGC 2 cut(s) 78, 189
HinfI GANTC 3 cut(s) 288, 315, 533
HpaII CCGG 2 cut(s) 100, 161
Hpy188I TCNGA 3 cut(s) 139, 186, 417
Hpy188III TCNNGA 4 cut(s) 161, 539, 562, 591
Hpy99I CGWCG 5 cut(s) 97, 127, 133, 224, 270
HpyAV CCTTC 2 cut(s) 254, 275
HpyCH4III ACNGT 2 cut(s) 19, 455
HpyCH4IV ACGT 2 cut(s) 112, 222
HpyCH4V TGCA 3 cut(s) 116, 421, 520
HpyF10VI GCNNNNNNNGC 4 cut(s) 94, 103, 195, 375
HpySE526I ACGT 2 cut(s) 112, 222
Hsp92I GRCGYC 1 cut(s) 125
Hsp92II CATG 2 cut(s) 322, 631
HspAI GCGC 2 cut(s) 78, 189
Kpn2I TCCGGA 1 cut(s) 160
KspI CCGCGG 1 cut(s) 76
Kzo9I GATC 4 cut(s) 69, 163, 181, 296
LmnI GCTCC 3 cut(s) 102, 246, 374
LpnPI CCDG 9 cut(s) 113, 174, 312, 376, 388, 420, 506, 547, 591
Lsp1109I GCAGC 1 cut(s) 433
LweI GCATC 3 cut(s) 66, 408, 596
MaeII ACGT 2 cut(s) 112, 222
MaeIII GTNAC 3 cut(s) 26, 46, 108
MalI GATC 4 cut(s) 71, 165, 183, 298
MboI GATC 4 cut(s) 69, 163, 181, 296
MboII GAAGA 5 cut(s) 315, 333, 344, 508, 593
MflI RGATCY 2 cut(s) 69, 181
MhlI GDGCHC 3 cut(s) 243, 371, 475
MluCI AATT 4 cut(s) 140, 525, 595, 608
MlyI GAGTC 3 cut(s) 297, 324, 542
MnlI CCTC 7 cut(s) 60, 145, 237, 267, 273, 302, 303
MroI TCCGGA 1 cut(s) 160
MseI TTAA 1 cut(s) 488
MslI CAYNNNNRTG 1 cut(s) 621
MspA1I CMGCKG 2 cut(s) 75, 512
MspI CCGG 2 cut(s) 100, 161
Mva1269I GAATGC 1 cut(s) 168
MvnI CGCG 3 cut(s) 75, 92, 231
MwoI GCNNNNNNNGC 4 cut(s) 94, 103, 195, 375
NdeII GATC 4 cut(s) 69, 163, 181, 296
NlaIII CATG 2 cut(s) 322, 631
NlaIV GGNNCC 1 cut(s) 71
NmeAIII GCCGAG 1 cut(s) 238
NmuCI GTSAC 2 cut(s) 46, 108
NspV TTCGAA 1 cut(s) 571
PaqCI CACCTGC 1 cut(s) 383
PcsI WCGNNNNNNNCGW 2 cut(s) 228, 265
PctI GAATGC 1 cut(s) 168
PflFI GACNNNGTC 1 cut(s) 127
PkrI GCNGC 3 cut(s) 77, 105, 423
PleI GAGTC 3 cut(s) 296, 323, 541
PmaCI CACGTG 1 cut(s) 113
PmlI CACGTG 1 cut(s) 113
PpsI GAGTC 3 cut(s) 296, 323, 541
Ppu21I YACGTR 1 cut(s) 113
PspCI CACGTG 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 71
PsuI RGATCY 2 cut(s) 69, 181
PsyI GACNNNGTC 1 cut(s) 127
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 1 cut(s) 358
RsaNI GTAC 1 cut(s) 357
RseI CAYNNNNRTG 1 cut(s) 621
SacII CCGCGG 1 cut(s) 76
SaqAI TTAA 1 cut(s) 488
SatI GCNGC 3 cut(s) 76, 104, 422
Sau3AI GATC 4 cut(s) 69, 163, 181, 296
SchI GAGTC 3 cut(s) 297, 324, 542
SduI GDGCHC 3 cut(s) 243, 371, 475
SetI ASST 6 cut(s) 90, 115, 225, 362, 377, 514
SfaNI GCATC 3 cut(s) 66, 408, 596
SfcI CTRYAG 1 cut(s) 430
Sfr303I CCGCGG 1 cut(s) 76
SfuI TTCGAA 1 cut(s) 571
SgrBI CCGCGG 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 621
Sse9I AATT 4 cut(s) 140, 525, 595, 608
SsiI CCGC 5 cut(s) 73, 75, 104, 250, 505
StyI CCWWGG 2 cut(s) 276, 549
TaaI ACNGT 2 cut(s) 19, 455
TaiI ACGT 2 cut(s) 115, 225
TaqI TCGA 3 cut(s) 219, 295, 571
TasI AATT 4 cut(s) 140, 525, 595, 608
TauI GCSGC 2 cut(s) 78, 106
Tru1I TTAA 1 cut(s) 488
Tru9I TTAA 1 cut(s) 488
TseFI GTSAC 2 cut(s) 46, 108
TseI GCWGC 1 cut(s) 421
Tsp45I GTSAC 2 cut(s) 46, 108
TspDTI ATGAA 1 cut(s) 401
Tth111I GACNNNGTC 1 cut(s) 127
XapI RAATTY 2 cut(s) 140, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.