Rorug05G0294200

Protein of unknown function (DUF3128)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0010339
Physical Location & Seq
Forward (+)
33937677 .. 33940273
2597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0294200.1

Sequence Viewer

Length: 297 bp
ATGGCATGGAGGGGAAGTCTATCTCGGAACTTAAAGGAGCTTAGGATCCTACTCTGCCAGTCATCTCCTTCAAGCGCCACCACCAGAACATTTGTGGAGAAGAATTACAAGGATCTCAAGAGTTTGAACCCCAAATTGCCCATCTTGATTCGCGAGAGCAGTGGGATTGATCCTCAGCTATGGGCTAGATATGACTTGGGTGTTGAGAGGGGTGTCCGGCTGGAAGGTTTGACAGAGCAACAGATCTCAAAAGCACTTGAGGACCTTGTCAAAGTGGGGGAGTCTCTTAAAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3128

Protein Analysis

98

Amino Acids

11.04

Weight (kDa)

9.46

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
L51_S25_CI-B8 PF05047 28 - 78 7.5e-16 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25315 AT4G25315 AT4G25315
fragaria_vesca FvH4_3g30110
malus_domestica MD03G1133000.v1.1 MD14G1038500.v1.1
prunus_persica Prupe.6G117700_v2.0.a1
pyrus_communis pycom14g03310
rosa_chinensis RchiOBHm_Chr5g0055601
rosa_laevigata RLG00000034999
rosa_multiflora Rmu_sc0004818.1_g000002
rosa_roxburghii Rroxscaffold_1G00024680
rosa_rugosa Rorug05G0294200 Rorug05G0294300 Rorug05G0294300 Rorug05G0294400
rosa_samantha Rh5AG363600 Rh5BG375700 Rh5CG398200 Rh5DG388900
rosa_wichuraiana Rw5G034210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 153
AclWI GGATC 4 cut(s) 40, 53, 120, 164
AgsI TTSAA 2 cut(s) 72, 127
AluBI AGCT 2 cut(s) 40, 178
AluI AGCT 2 cut(s) 40, 178
Alw26I GTCTC 1 cut(s) 288
AlwI GGATC 4 cut(s) 40, 53, 120, 164
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 262
AvaII GGWCC 1 cut(s) 262
BamHI GGATCC 1 cut(s) 45
BbvCI CCTCAGC 1 cut(s) 174
BccI CCATC 1 cut(s) 149
BcoDI GTCTC 1 cut(s) 288
BfaI CTAG 1 cut(s) 186
BfoI RGCGCY 1 cut(s) 78
BglII AGATCT 1 cut(s) 243
Bme18I GGWCC 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 47
Bpu10I CCTNAGC 2 cut(s) 41, 174
BpuEI CTTGAG 2 cut(s) 101, 278
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 188
BseNI ACTGG 1 cut(s) 58
Bsh1236I CGCG 1 cut(s) 153
BsiSI CCGG 1 cut(s) 217
BsmAI GTCTC 1 cut(s) 288
Bsp143I GATC 4 cut(s) 45, 112, 169, 243
Bsp68I TCGCGA 1 cut(s) 153
BspCNI CTCAG 1 cut(s) 187
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 47
BspPI GGATC 4 cut(s) 40, 53, 120, 164
BsrI ACTGG 1 cut(s) 58
BssMI GATC 4 cut(s) 45, 112, 169, 243
BstDEI CTNAG 2 cut(s) 41, 174
BstFNI CGCG 1 cut(s) 153
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 4 cut(s) 48, 115, 172, 246
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 4 cut(s) 45, 112, 169, 243
BstUI CGCG 1 cut(s) 153
BstX2I RGATCY 3 cut(s) 45, 112, 243
BstYI RGATCY 3 cut(s) 45, 112, 243
BtsI GCAGTG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 166
BtuMI TCGCGA 1 cut(s) 153
CfoI GCGC 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 262
CviAII CATG 1 cut(s) 6
CviJI RGCY 5 cut(s) 40, 178, 185, 220, 293
CviKI_1 RGCY 5 cut(s) 40, 178, 185, 220, 293
DdeI CTNAG 2 cut(s) 41, 174
DpnI GATC 4 cut(s) 47, 114, 171, 245
DpnII GATC 4 cut(s) 45, 112, 169, 243
Eco47I GGWCC 1 cut(s) 262
EcoO109I RGGNCCY 1 cut(s) 262
FaeI CATG 1 cut(s) 9
FaiI YATR 3 cut(s) 7, 181, 192
FatI CATG 1 cut(s) 5
FspBI CTAG 1 cut(s) 186
GlaI GCGC 1 cut(s) 76
HaeII RGCGCY 1 cut(s) 78
HapII CCGG 1 cut(s) 217
HhaI GCGC 1 cut(s) 77
Hin1II CATG 1 cut(s) 9
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HinfI GANTC 2 cut(s) 148, 281
HpaII CCGG 1 cut(s) 217
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 3 cut(s) 118, 145, 152
HpyAV CCTTC 2 cut(s) 78, 218
HpyF3I CTNAG 2 cut(s) 41, 174
Hsp92II CATG 1 cut(s) 9
HspAI GCGC 1 cut(s) 75
Kzo9I GATC 4 cut(s) 45, 112, 169, 243
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 4 cut(s) 71, 97, 206, 230
MaeI CTAG 1 cut(s) 186
MalI GATC 4 cut(s) 47, 114, 171, 245
MboI GATC 4 cut(s) 45, 112, 169, 243
MboII GAAGA 1 cut(s) 112
MflI RGATCY 3 cut(s) 45, 112, 243
MluCI AATT 2 cut(s) 103, 134
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 4 cut(s) 3, 183, 201, 253
MseI TTAA 2 cut(s) 32, 288
MspI CCGG 1 cut(s) 217
MvnI CGCG 1 cut(s) 153
NdeII GATC 4 cut(s) 45, 112, 169, 243
NlaIII CATG 1 cut(s) 9
NlaIV GGNNCC 1 cut(s) 47
NruI TCGCGA 1 cut(s) 153
PfeI GAWTC 1 cut(s) 148
PflFI GACNNNGTC 1 cut(s) 266
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
PpuMI RGGWCCY 1 cut(s) 262
Psp5II RGGWCCY 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 47
PspPI GGNCC 1 cut(s) 262
PspPPI RGGWCCY 1 cut(s) 262
PsuI RGATCY 3 cut(s) 45, 112, 243
PsyI GACNNNGTC 1 cut(s) 266
RruI TCGCGA 1 cut(s) 153
SaqAI TTAA 2 cut(s) 32, 288
Sau3AI GATC 4 cut(s) 45, 112, 169, 243
Sau96I GGNCC 1 cut(s) 262
SchI GAGTC 1 cut(s) 290
SetI ASST 4 cut(s) 42, 180, 229, 267
SinI GGWCC 1 cut(s) 262
SmlI CTYRAG 2 cut(s) 116, 257
SmoI CTYRAG 2 cut(s) 116, 257
Sse9I AATT 2 cut(s) 103, 134
SspMI CTAG 1 cut(s) 186
TasI AATT 2 cut(s) 103, 134
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 2 cut(s) 32, 288
Tru9I TTAA 2 cut(s) 32, 288
TscAI CASTG 1 cut(s) 166
TspRI CASTG 1 cut(s) 166
Tth111I GACNNNGTC 1 cut(s) 266
VpaK11BI GGWCC 1 cut(s) 262
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.