MD03G1133000.v1.1

Protein of unknown function (DUF3128)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0010339
Physical Location & Seq
Forward (+)
13223251 .. 13226025
2775 bp
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UTR
Exon/CDS
Intron
MD03G1133000.v1.1.491

Sequence Viewer

Length: 129 bp
ATGGCTCCGGTGCATCAGATGCAGCAGTATTATAGACTTGGGTCACTTGATAACTGTTCTGGGAAATGGACTTCTCTGGTTGATTGCTTGGTTTTGAAGACGAAGCGGTCATCTGAAGTGCAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3128

Protein Analysis

43

Amino Acids

4.8

Weight (kDa)

8.77

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PANTS-like PF11326 2 - 41 7e-10 Synaptic plasticity regulator PANTS-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25315 AT4G25315 AT4G25315
fragaria_vesca FvH4_3g30110
malus_domestica MD03G1133000.v1.1 MD14G1038500.v1.1
prunus_persica Prupe.6G117700_v2.0.a1
pyrus_communis pycom14g03310
rosa_chinensis RchiOBHm_Chr5g0055601
rosa_laevigata RLG00000034999
rosa_multiflora Rmu_sc0004818.1_g000002
rosa_roxburghii Rroxscaffold_1G00024680
rosa_rugosa Rorug05G0294200 Rorug05G0294300 Rorug05G0294300 Rorug05G0294400
rosa_samantha Rh5AG363600 Rh5BG375700 Rh5CG398200 Rh5DG388900
rosa_wichuraiana Rw5G034210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 106
Acc36I ACCTGC 1 cut(s) 112
AciI CCGC 1 cut(s) 106
AgsI TTSAA 1 cut(s) 97
ApeKI GCWGC 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 34
BfuAI ACCTGC 1 cut(s) 112
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 2 cut(s) 9, 22
BoxI GACNNNNGTC 1 cut(s) 40
BpiI GAAGAC 1 cut(s) 104
BsaWI WCCGGW 1 cut(s) 7
BseXI GCAGC 1 cut(s) 34
BsiSI CCGG 1 cut(s) 8
BspACI CCGC 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 112
Bst4CI ACNGT 1 cut(s) 56
BstAPI GCANNNNNTGC 1 cut(s) 19
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstPAI GACNNNNGTC 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 34
BstV2I GAAGAC 1 cut(s) 104
BveI ACCTGC 1 cut(s) 112
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
DrdI GACNNNNNNGTC 1 cut(s) 106
DseDI GACNNNNNNGTC 1 cut(s) 106
FaiI YATR 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 23
GluI GCNGC 1 cut(s) 23
HapII CCGG 1 cut(s) 8
HpaII CCGG 1 cut(s) 8
Hpy188I TCNGA 2 cut(s) 18, 115
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4V TGCA 3 cut(s) 13, 22, 121
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 4 cut(s) 21, 45, 62, 107
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 2 cut(s) 9, 22
MaeIII GTNAC 1 cut(s) 42
MboII GAAGA 1 cut(s) 109
MspI CCGG 1 cut(s) 8
MwoI GCNNNNNNNGC 1 cut(s) 19
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 42
PkrI GCNGC 1 cut(s) 24
PshAI GACNNNNGTC 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 6
SatI GCNGC 1 cut(s) 23
SetI ASST 1 cut(s) 126
SfaNI GCATC 2 cut(s) 9, 22
SgeI CNNG 6 cut(s) 20, 50, 59, 72, 89, 100
SsiI CCGC 1 cut(s) 106
TaaI ACNGT 1 cut(s) 56
TseFI GTSAC 1 cut(s) 42
TseI GCWGC 1 cut(s) 22
Tsp45I GTSAC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.