Rorug05G0294400

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007748
Physical Location & Seq
Forward (+)
33976265 .. 33980592
4328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0294400.1

Sequence Viewer

Length: 654 bp
ATGGAGTGCGTGGTTCAGGGAATCATAGAAACACAGCATGTTGAAGCCCTTGAGATTCTTCTTCAGGGTCTTTGTGGTGTTCGCAGAGAACCTTTGAAGGTCCATGAGATATGCCTTAAAAGTGGCCCAAACTTAGGAGCTGTACCTTCTGAGGTTCGACTTATTTGCAATCTTGAACAAACTGAACCTACATGGACTGTGAGGTTCGTGGGGGGTGCGATGAGAGGTGCAGGTGCTGAGCAACTCTCAGTTTTAGTAAGAACTGTGATCGAAAGCAAAGCAAGCAAGAATGTGCTTCGCTTATTTTATGCACTTGGCTACAAGTTGGATCATGAGTTACTGAGGGTTGGGTTTGCGTTCCATTTCCAGAGAGGCACGCAGATGACTGTGACTGTGTCATCAGTTAATAAGATGCCACAACTACACAATACAGATGAAGCTGTCCCTGTAACTCCCGGGATACAGTTGGTTGAAGTTACGGCCCCTGCATCATCTGAAACTTATACTGAAGTTGCGTCAGCAGTGTCATCATTTTGCGAATATCTTGCACCCCTCCTGCATTTGTCAAAACCGGGAATTTCAACTGGGGTTGTTCCTACTGCTGCTGCCGCTGCTGCATCTCTCATGTCTGATGGTGGGGGTACTACCTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPP

Protein Analysis

217

Amino Acids

23.14

Weight (kDa)

5.87

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 221
Acc36I ACCTGC 1 cut(s) 221
AciI CCGC 1 cut(s) 609
AclWI GGATC 1 cut(s) 336
AcsI RAATTY 1 cut(s) 576
AcuI CTGAAG 2 cut(s) 47, 528
AfaI GTAC 2 cut(s) 144, 643
AfiI CCNNNNNNNGG 1 cut(s) 134
AgsI TTSAA 5 cut(s) 44, 97, 176, 473, 582
AluBI AGCT 2 cut(s) 140, 440
AluI AGCT 2 cut(s) 140, 440
AlwI GGATC 1 cut(s) 336
AlwNI CAGNNNCTG 1 cut(s) 236
Ama87I CYCGRG 1 cut(s) 455
AoxI GGCC 2 cut(s) 124, 480
ApeKI GCWGC 4 cut(s) 602, 605, 611, 614
ApoI RAATTY 1 cut(s) 576
AspS9I GGNCC 3 cut(s) 100, 125, 481
AsuC2I CCSGG 3 cut(s) 456, 457, 573
AvaI CYCGRG 1 cut(s) 455
AvaII GGWCC 1 cut(s) 100
BbvI GCAGC 4 cut(s) 589, 592, 598, 601
BccI CCATC 1 cut(s) 626
BceAI ACGGC 1 cut(s) 495
BcgI CGANNNNNNTGC 4 cut(s) 147, 181, 527, 561
BciVI GTATCC 1 cut(s) 453
BcnI CCSGG 3 cut(s) 456, 457, 573
BfuAI ACCTGC 1 cut(s) 221
BfuI GTATCC 1 cut(s) 453
BisI GCNGC 5 cut(s) 603, 606, 609, 612, 615
BlpI GCTNAGC 1 cut(s) 237
BlsI GCNGC 5 cut(s) 604, 607, 610, 613, 616
Bme1390I CCNGG 3 cut(s) 456, 457, 573
Bme18I GGWCC 1 cut(s) 100
BmeT110I CYCGRG 1 cut(s) 455
BmgT120I GGNCC 3 cut(s) 100, 125, 481
BmiI GGNNCC 1 cut(s) 483
BmrFI CCNGG 3 cut(s) 456, 457, 573
BmrI ACTGGG 1 cut(s) 594
BmsI GCATC 3 cut(s) 402, 497, 626
BmuI ACTGGG 1 cut(s) 594
BplI GAGNNNNNCTC 2 cut(s) 230, 262
Bpu1102I GCTNAGC 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 71
BpuMI CCSGG 3 cut(s) 456, 457, 573
BsaJI CCNNGG 1 cut(s) 455
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 589
BseDI CCNNGG 1 cut(s) 455
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMII CTCAG 4 cut(s) 141, 228, 261, 332
BseNI ACTGG 1 cut(s) 589
BseXI GCAGC 4 cut(s) 589, 592, 598, 601
BsgI GTGCAG 1 cut(s) 249
BshFI GGCC 2 cut(s) 126, 482
BsiHKCI CYCGRG 1 cut(s) 455
BsiSI CCGG 2 cut(s) 456, 572
BslFI GGGAC 1 cut(s) 428
BslI CCNNNNNNNGG 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 428
BsnI GGCC 2 cut(s) 126, 482
BsoBI CYCGRG 1 cut(s) 455
Bsp143I GATC 2 cut(s) 267, 328
Bsp1720I GCTNAGC 1 cut(s) 237
BspACI CCGC 1 cut(s) 609
BspANI GGCC 2 cut(s) 126, 482
BspCNI CTCAG 4 cut(s) 142, 229, 260, 333
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 1 cut(s) 483
BspMI ACCTGC 1 cut(s) 221
BspPI GGATC 1 cut(s) 336
BsrI ACTGG 1 cut(s) 589
BssECI CCNNGG 1 cut(s) 455
BssMI GATC 2 cut(s) 267, 328
Bst4CI ACNGT 5 cut(s) 199, 265, 388, 394, 465
BstC8I GCNNGC 2 cut(s) 283, 377
BstDEI CTNAG 5 cut(s) 133, 150, 237, 247, 341
BstKTI GATC 2 cut(s) 270, 331
BstMBI GATC 2 cut(s) 267, 328
BstMWI GCNNNNNNNGC 4 cut(s) 282, 608, 611, 614
BstNSI RCATGY 1 cut(s) 41
BstSCI CCNGG 3 cut(s) 454, 455, 571
BstV1I GCAGC 4 cut(s) 589, 592, 598, 601
BsuI GTATCC 1 cut(s) 453
BsuRI GGCC 2 cut(s) 126, 482
BtgZI GCGATG 1 cut(s) 233
BtsI GCAGTG 1 cut(s) 528
BtsIMutI CAGTG 1 cut(s) 528
BveI ACCTGC 1 cut(s) 221
Cac8I GCNNGC 2 cut(s) 283, 377
CaiI CAGNNNCTG 1 cut(s) 236
CciI TCATGA 1 cut(s) 331
Cfr13I GGNCC 3 cut(s) 100, 125, 481
Cfr9I CCCGGG 1 cut(s) 455
CseI GACGC 1 cut(s) 504
Csp6I GTAC 2 cut(s) 143, 642
CviAII CATG 5 cut(s) 38, 104, 192, 332, 625
CviJI RGCY 6 cut(s) 47, 126, 140, 318, 440, 482
CviKI_1 RGCY 6 cut(s) 47, 126, 140, 318, 440, 482
CviQI GTAC 2 cut(s) 143, 642
DdeI CTNAG 5 cut(s) 133, 150, 237, 247, 341
DpnI GATC 2 cut(s) 269, 330
DpnII GATC 2 cut(s) 267, 328
Eco47I GGWCC 1 cut(s) 100
Eco57I CTGAAG 2 cut(s) 47, 528
Eco88I CYCGRG 1 cut(s) 455
FaeI CATG 5 cut(s) 41, 107, 195, 335, 628
FaqI GGGAC 1 cut(s) 428
FatI CATG 5 cut(s) 37, 103, 191, 331, 624
Fnu4HI GCNGC 5 cut(s) 603, 606, 609, 612, 615
Fsp4HI GCNGC 5 cut(s) 603, 606, 609, 612, 615
GluI GCNGC 5 cut(s) 603, 606, 609, 612, 615
HaeIII GGCC 2 cut(s) 126, 482
HapII CCGG 2 cut(s) 456, 572
HgaI GACGC 1 cut(s) 504
Hin1II CATG 5 cut(s) 41, 107, 195, 335, 628
HinfI GANTC 2 cut(s) 21, 55
HpaII CCGG 2 cut(s) 456, 572
Hpy188I TCNGA 3 cut(s) 151, 496, 631
Hpy188III TCNNGA 3 cut(s) 173, 332, 367
HpyAV CCTTC 2 cut(s) 91, 156
HpyCH4III ACNGT 5 cut(s) 199, 265, 388, 394, 465
HpyCH4V TGCA 7 cut(s) 168, 230, 311, 488, 548, 559, 617
HpyF10VI GCNNNNNNNGC 4 cut(s) 282, 608, 611, 614
HpyF3I CTNAG 5 cut(s) 133, 150, 237, 247, 341
Hsp92II CATG 5 cut(s) 41, 107, 195, 335, 628
Kzo9I GATC 2 cut(s) 267, 328
LmnI GCTCC 1 cut(s) 137
Lsp1109I GCAGC 4 cut(s) 589, 592, 598, 601
LweI GCATC 3 cut(s) 402, 497, 626
MaeIII GTNAC 4 cut(s) 336, 388, 448, 475
MalI GATC 2 cut(s) 269, 330
MboI GATC 2 cut(s) 267, 328
MboII GAAGA 2 cut(s) 50, 53
MluCI AATT 1 cut(s) 576
MmeI TCCRAC 1 cut(s) 306
MnlI CCTC 6 cut(s) 145, 195, 218, 336, 365, 563
MseI TTAA 2 cut(s) 117, 405
MslI CAYNNNNRTG 1 cut(s) 380
MspA1I CMGCKG 1 cut(s) 611
MspI CCGG 2 cut(s) 456, 572
MspR9I CCNGG 3 cut(s) 456, 457, 573
MwoI GCNNNNNNNGC 4 cut(s) 282, 608, 611, 614
NciI CCSGG 3 cut(s) 456, 457, 573
NdeII GATC 2 cut(s) 267, 328
NlaIII CATG 5 cut(s) 41, 107, 195, 335, 628
NlaIV GGNNCC 1 cut(s) 483
NmuCI GTSAC 1 cut(s) 388
NspI RCATGY 1 cut(s) 41
PagI TCATGA 1 cut(s) 331
PaqCI CACCTGC 1 cut(s) 221
PfeI GAWTC 2 cut(s) 21, 55
PflFI GACNNNGTC 1 cut(s) 394
PkrI GCNGC 5 cut(s) 604, 607, 610, 613, 616
PspN4I GGNNCC 1 cut(s) 483
PspPI GGNCC 3 cut(s) 100, 125, 481
PstNI CAGNNNCTG 1 cut(s) 236
PsyI GACNNNGTC 1 cut(s) 394
RsaI GTAC 2 cut(s) 144, 643
RsaNI GTAC 2 cut(s) 143, 642
RseI CAYNNNNRTG 1 cut(s) 380
SaqAI TTAA 2 cut(s) 117, 405
SatI GCNGC 5 cut(s) 603, 606, 609, 612, 615
Sau3AI GATC 2 cut(s) 267, 328
Sau96I GGNCC 3 cut(s) 100, 125, 481
ScrFI CCNGG 3 cut(s) 456, 457, 573
SfaNI GCATC 3 cut(s) 402, 497, 626
SinI GGWCC 1 cut(s) 100
SmaI CCCGGG 1 cut(s) 457
SmiMI CAYNNNNRTG 1 cut(s) 380
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 1 cut(s) 576
SsiI CCGC 1 cut(s) 609
StyD4I CCNGG 3 cut(s) 454, 455, 571
TaaI ACNGT 5 cut(s) 199, 265, 388, 394, 465
TaqI TCGA 2 cut(s) 157, 270
TasI AATT 1 cut(s) 576
TauI GCSGC 1 cut(s) 611
TfiI GAWTC 2 cut(s) 21, 55
Tru1I TTAA 2 cut(s) 117, 405
Tru9I TTAA 2 cut(s) 117, 405
TscAI CASTG 1 cut(s) 528
TseFI GTSAC 1 cut(s) 388
TseI GCWGC 4 cut(s) 602, 605, 611, 614
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 1 cut(s) 450
TspMI CCCGGG 1 cut(s) 455
TspRI CASTG 1 cut(s) 528
Tth111I GACNNNGTC 1 cut(s) 394
VpaK11BI GGWCC 1 cut(s) 100
XapI RAATTY 1 cut(s) 576
XceI RCATGY 1 cut(s) 41
XmaI CCCGGG 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.