AT5G35210

PHD finger family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007748
Physical Location & Seq
Reverse (-)
13474196 .. 13482591
8396 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G35210.2

Sequence Viewer

Length: 5037 bp
ATGGAAGCGAAGGTTCCTAGACCTAGGGGAAGACCGAGGAAACGTCAGAGATTAGAGGATGATAATCGAAAATTGAACAATCGAGGGAAAAAGCAAGTTCTGGAGGTTGAGCCTGCAGTGCCGATATCTTTACTTGGTTGTTATATGCTGAAAGATTTTGATGACAATGAAGTTTTTCTAGGGAAGATAGTGTCTTATGATACTGGGTTATATAGAGTGATATATGAGGATGGTGATTGTGAGGAATTGGAGAGTGGTGATCTTCGTCGTTTAATTATTTCGGATAGTTACTTAGACGATGAGTTACGTGTTAGAAGGAAGAAATTAGATAAACTTATACTGAAGAAGGAGGAGAAAAAGAAACGAAATTCGCCGGAGAACAAAGCAGTTGAGTTGCCAAATCAAGTAAATGGAGTGCAGGCACGAGCAGTTACGAACTCCGAAGATGGTGATTCATATAGTGACTCAGAGTCGTCTGAGAGTGGAGATAAGAGAGGTTCAGATCTTGAAATTGAGGCTCCTCTTGTTCCACCAGTGGATTTACCTCCTTCATCAGGGACAATTGGTATCCCAGAGGAGGCTGTGGCACATCTCTTATCTGTATATGGGTTCTTAAGGTCATTTAGTTTTCAGCTTTATATCTGCCCATTTGAACTCAATGATTTTGTGGGAGCGTTGTATTTCTCGGGACCAAATTCTTTGTTGGATGCTGTTCATGTGGCCTTGTTGCGGGCATTGAAGGGTCATCTAGAGAGACTTTCCTCCTCCAAGTCTGTCCTAGCCTCAAAATGCTTGAGGTGCATTGATTGGAGCTTGCTCGATGTGCTAACTTGGCCTGTTTATTTGGTTCAGTACTTTACTGCGATGGGGCATGCTAGTGGGCCTCAGTGGAACATTTTTAACAAATTTGTTGTGGAAATAGAATACTACTCGTTACCCATTGGGATGAAATTGAAGATTCTACAAATTCTCTGTGATGACATCTTTGATGTAGCTGATCTAAGAGATGAAATAGATGCTCGCGAAGAATCTGAAATTGGATTTGATCCTGATAGAGTTGCCACAGGTCTTCTTGAAAATGTACCTAGACGGGTCCACCCCAGATTCGCTAAAACCTCAGCTTACAAGGAAAAAGAGGTTACTGATAGCTCAACAAACGAGTCTAAAGATTTGGACTCAAGATGTACTAATGGCGGTTCAAATGAAGTTAGCTCAGATCTAGATGGAAACAGTGATGAATGTAGGATTTGTGGAATGGATGGAACCTTGCTTTGTTGTGATGGATGTCCTTTAGCATACCACTCAAGATGCATTGGTGTGGTCAAAATGTATATACCAGATGGGCCATGGTTTTGTCCAGAGTGCACTATTAACAAAAAGGGGCCGAAGATTGCTCATGGAACCTCACTTAGAGGAGCTGTACAGTTTGGAATGGATCCACATGGGCGACTCTTCTTGGGTACTTGCAATCACTTACTGGTGCTTAACATATCTGTCAATGGAGATGCAGTTGTCAAGTACTACAATGTTAATGACATATCAAAAGTTGTACTAGTGCTTATATCTGCATCAAGCCATACACTAGAATATGTAGAGATTTGCAAAGCGATCACCCAATACTGGGATCTTCCTGAAGGTATCTCCTTGAGGGAAGGGGAGATTGGTTTAACTCAAGCAAAGGATAGAGAGGATGGCAAGGTTTCAGAGATCACTAAGTCAGATAGTGCAAATATTTCCAATAGAAGTCATACCCAGACTGTGTTTGACCTCCCTACATCTACTTTGGGTAATACCAACAGTGCTGTTACAGGAGGTTCATGTGGAATACAGGGGAAAAAATTGGCTGCTCGTGTTACCTACCTGGGTTTATCGTTTAAACCCAACACATACAATAATCATTACACAAATGGAGAATTGGCTGTATCTGCTGCTGCCAGTTTGGCTGTCCTATCGTCAGAGGAAACCCATGAACCTGACCTTCGCAAGTATAATAGTGCCAAGAAAGCTGCATCAAGTAACATCTTAGAGCAGATGAAAGCTTTTTCATTAGTAGCCCCCCGTTTCTTCTGGCCAAGTCCTGATAAGAAGGAGATTACCAGAGAAAGATGTGGTTGGTGTCATTCTTGCCGACTCACATCTGCAAGCAGGAGAGGATGCATGTTAAATGCAGCTGTAGCGGGTGCCACTAAGGGTGCAATGAAGATCTTCAGTGGTCTTTTTCCTCTAAAGAATGGGGAGGGAGTCCTTTCGAGTATTGCAGCATATATTCTATATCTAGAGGAAAGCTTGCGTGGTCTGATAGCTGGGCCATTTCTCAGTGAAAGTCCAAGAAAACAGTGGCGTAAGCAGGTAGAGGAAGCCTCGACATGCAAAGCCCTAAAAGCACCCCTCCTTGAACTTGAGGAAAATATCTGCAGTATTGCTCTGTCATGCGATTGGTTTAAACAGATGGATGATTGGTTGATAGAACATTCTATTTTCCAAAGTGCTCCAGTTACACTTGGGGTTCCACAGAGACGTGGACCTGGTAGGACGAAGCAAAATACCCAGGCTGAAGTTACAGCTGAAGGTTCCGACGCTGATAGCTTTACATGGTGGCGAGGAGGGAAGTTATCAAAAGTTATTTTGTTGAAAGCAGTTTTGTCACAACCGGCAACAAAGAAAGCAGCTTGGCAAGGGGGTTCTAAAAAGATTCCTGGATTAAATTATGGTGATGCTTCTTACATCCCTAGGAGAAGCAGACGGTCTTTTTGGAAAGCTGCTGTTGAAAGTAGCAAGAATATATCTCAGCTTGCTCTTCAGGTAAGATATCTGGATATGAGTTTAAGATGGAGAGAACTTGTGCGGCCAGACCAAAATCTCCAGAATGTCAAAGGCCCAGAGACAGATGTTGCCATTTTTAGAAACGCTCGGATATGTGACAAAAAGCTTAGTGATAACAAGGTTAGCTACGGAGTTTTCTTTGGAAATCAAAAGCATCTGCCATCACGCGTCATGAAGAATATAATGGAGGTCGAGAAAACCCAAGATAGAAATGAAAAGTATTGGTTACAAGAAGCCCATGTTCCCCTATACTTGATCAAAGAATTTGAAGAGAGCTTGCATAGAGTACAAATGCCTTCTTCAACCAAGAAGCCATCCAAGAAATTATCAAAGCTTCAGAGAAAGCAGCTGAAAGCTTCCCTCATGGACATATTTTCATATATAGCCTCAAGGAGGGACAAGATGGAGAAATGTTCTTGTGCATCATGTGATCATGATGTTCTATTACGGGATACAACAACATGCAGTTCTTGCCATGGATTTTGTCACAAGGATTGCACTTCGATGTCTCAACACACAAATGGAAATGTTGAAGTTCTGGTCACCTGCAAACGGTGTTACCTTTCAAAAACTCGAGTTCCAACAAATATCAATCACAGACAGTCAACAGCACCCCAGTTCACGATCAACGTACGACATCAAAATGCAGTCATTCCAGTCATCAAGGTTAAGCCTCCTAGTCAACAATTATCATCCCAGAAGCCACGGGAGAACACTTCGGGAGTTAAACAAGTCACTCCTGATTCTAGTGTATCTAAGAGTAAACAGAAGACACTGTCCTGTGGAGTCATATGGAGGAAAAAGAACGTAGAGGACACAGGTGTTGATTTCCGGAATCAAAACATTCTCTTGGCCGGTAGATCAGATAAACCGAGCCTGGAACCGGTTTGTGGGATCTGCCTACTGCCGTATAATCCTGGGTTAACGTATATTCACTGTACAAAATGCGAAAAGTGGTTCCACACTGAAGCTGTTAAGCTCAAAGATTCACAAATTCCTGAAGTTGTTGGGTTCAAATGTTGCAAATGTCGACGTATACGATCCCCTGATTGCCCTTACATGGATCCCAAACTCAAGGAACAGAAGCAGATCAAAAGAATAGTCTTCACGAACCAGAAACAGAGGCAAGGAAATTCTGGGTTGGATTCTGATTCTGAAAGAATGTCTGAACAAAAAGACTCGAAACCTTCTACTCCGTTACCTGCCACTCCTTTATATCCTCCTGACGATGTATTTATTCCAGAAGATGATCCTCTCCTGGTATCAGTTTCCAAAGTCAAACAAATCACACCCAGTAGTTTCGATCTTGAATGGAGCACCACTGCTTTTGCGCCTGGACCCCAAAAGCTACCAGTTAGAAGGCAAGTGAAACGAGAAGATTCTGATGCAGCCTATCCTGAACTGCATCCTATTGTGAAACCCGAGGCAGAGGAGCAAGCTTTACCTGTTCTAACAGAATGGGATTTGTCTGGTGAGCTACTTTTCGACTACGAGGACATGGAATTTGAACCGCAAACTTATTTCTCGTTGACCGAGCTACTGACAGCCGATGATAGTGGTGGTGGTCAGTACCAGGAAAATGGTGATATGGTTGTTTCAGGAAACCCTCAGTTCGAACCAACAGAAAAAGAAGAGTGTGAAGATGATATGGGTCCATGTCAGAGATGTTTGCAAATGGATCCAGCGCCTGATCTTTTGTGCACGGTTTGTGGATTGCTTATACATTCTCACTGTTCTCCATGGTCAGCCTTACCCGGAAGTAGCTGGAGCTGTGGTCAATGCCGAATTAGGGCACTAGGAAGCATTACACTAGGAAGCTTTGGTGCAATCACACAGTTCAAGTCGATTCTTCCTGACCGGAGTACAAAAGTTGACATTTCGCTAGCTGGTCCATTTGCTGGAGCTGCACTCTCAGTTTCCATGTTTGCTGTTGGTCTGTTCCTATCTACAGAACCAGATGCAGCTAACGACCTGGTCCAGGTTCCCAGCATGTTATTTCAAGGTTCATTACTTCTTGGACTCATCAGCAGAGCAACTCTGGGATATGCAGCTTTGCATGCTGCGACAGTTTCAATCCACCCGCTTGTAATTGCCGGATGGTGTGGTTTAACAACAACAGCATTTAATATGCTTCCAGTGGGATGTTTGGATGGAGGAAGAGCTGTACAGGGATGGAAAGTGTTGCAGTTGATTCAAGTGTATACTATTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009941 GO:0009987 GO:0010019 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016589 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019867 GO:0023052 GO:0031010 GO:0031090 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031967 GO:0031968 GO:0031969 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0035064 GO:0042170 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051716 GO:0060255 GO:0060322 GO:0065007 GO:0070013 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0098588 GO:0098805 GO:0140030 GO:0140034 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1904949 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT PHD WHIM1

Protein Analysis

1678

Amino Acids

186.43

Weight (kDa)

7.75

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTM_DIR17_Tudor PF21743 48 - 91 1.1e-11 PTM/DIR17-like, Tudor domain
DDT PF02791 193 - 246 4.3e-16 DDT domain
WHIM1 PF15612 306 - 339 9.8e-07 WSTF, HB1, Itc1p, MBD9 motif 1
PHD PF00628 414 - 455 3.4e-07 PHD-finger
Chromo_PTM PF24294 965 - 1035 9.6e-34 Membrane-bound transcription factor PTM, chromo domain-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 3377
Acc36I ACCTGC 3 cut(s) 2338, 3377, 4033
AccB1I GGYRCC 1 cut(s) 2180
AccB7I CCANNNNNTGG 1 cut(s) 4721
AccI GTMKAC 3 cut(s) 3853, 3859, 5024
AccII CGCG 2 cut(s) 1023, 2991
AccIII TCCGGA 1 cut(s) 3654
AciI CCGC 6 cut(s) 730, 1194, 2177, 2845, 4334, 4904
AcoI YGGCCR 3 cut(s) 2069, 2846, 3675
AcsI RAATTY 8 cut(s) 367, 694, 905, 966, 3086, 3816, 3955, 4325
AcuI CTGAAG 9 cut(s) 362, 1653, 2191, 2574, 2586, 2783, 3143, 3810, 3843
AflII CTTAAG 1 cut(s) 613
AflIII ACRYGT 2 cut(s) 307, 2989
AgeI ACCGGT 1 cut(s) 3706
AhdI GACNNNNNGTC 1 cut(s) 469
AhlI ACTAGT 1 cut(s) 1552
AjiI CACGTC 1 cut(s) 2519
AjuI GAANNNNNNNTTGG 4 cut(s) 1020, 1052, 1644, 1676
Alw21I GWGCWC 4 cut(s) 1367, 2491, 4142, 4526
Alw26I GTCTC 4 cut(s) 748, 2509, 2876, 3336
Alw44I GTGCAC 2 cut(s) 1363, 4522
AlwNI CAGNNNCTG 1 cut(s) 4511
Ama87I CYCGRG 3 cut(s) 685, 3396, 4244
Aor13HI TCCGGA 1 cut(s) 3654
ApaLI GTGCAC 2 cut(s) 1363, 4522
ApoI RAATTY 8 cut(s) 367, 694, 905, 966, 3086, 3816, 3955, 4325
ArsI GACNNNNNNTTYG 6 cut(s) 2733, 2765, 3909, 3941, 4310, 4342
AsiGI ACCGGT 1 cut(s) 3706
Asp700I GAANNNNTTC 2 cut(s) 174, 2204
AspA2I CCTAGG 2 cut(s) 23, 2729
AspLEI GCGC 2 cut(s) 4156, 4510
AsuC2I CCSGG 1 cut(s) 4578
AsuHPI GGTGA 8 cut(s) 245, 269, 461, 1603, 2723, 3358, 4307, 4418
AsuII TTCGAA 1 cut(s) 4437
AsuNHI GCTAGC 1 cut(s) 4705
AvaI CYCGRG 3 cut(s) 685, 3396, 4244
AvaII GGWCC 7 cut(s) 689, 1093, 2522, 4160, 4475, 4712, 4798
AvrII CCTAGG 2 cut(s) 23, 2729
BaeGI GKGCMC 3 cut(s) 1367, 4526, 4618
BalI TGGCCA 1 cut(s) 2071
BamHI GGATCC 3 cut(s) 1435, 3886, 4501
BanI GGYRCC 1 cut(s) 2180
BauI CACGAG 2 cut(s) 423, 1848
BbsI GAAGAC 4 cut(s) 37, 1061, 3599, 3919
Bbv12I GWGCWC 4 cut(s) 1367, 2491, 4142, 4526
BbvCI CCTCAGC 1 cut(s) 1117
BceAI ACGGC 1 cut(s) 3715
BciVI GTATCC 2 cut(s) 578, 3268
BclI TGATCA 2 cut(s) 3078, 3253
BcnI CCSGG 1 cut(s) 4578
BcoDI GTCTC 4 cut(s) 748, 2509, 2876, 3336
BcuI ACTAGT 1 cut(s) 1552
BfmI CTRYAG 4 cut(s) 114, 2172, 2413, 4770
BfoI RGCGCY 1 cut(s) 4511
BfrI CTTAAG 1 cut(s) 613
BfuAI ACCTGC 3 cut(s) 2338, 3377, 4033
BfuI GTATCC 2 cut(s) 578, 3268
BglI GCCNNNNNGGC 1 cut(s) 1940
BglII AGATCT 3 cut(s) 502, 1216, 2202
BlnI CCTAGG 2 cut(s) 23, 2729
BmcAI AGTACT 2 cut(s) 854, 1520
Bme18I GGWCC 7 cut(s) 689, 1093, 2522, 4160, 4475, 4712, 4798
BmeRI GACNNNNNGTC 1 cut(s) 469
BmeT110I CYCGRG 3 cut(s) 685, 3396, 4244
BmgBI CACGTC 1 cut(s) 2519
BmrI ACTGGG 4 cut(s) 213, 1630, 3433, 4110
BmtI GCTAGC 1 cut(s) 4709
BmuI ACTGGG 4 cut(s) 213, 1630, 3433, 4110
BpiI GAAGAC 4 cut(s) 37, 1061, 3599, 3919
BplI GAGNNNNNCTC 4 cut(s) 2345, 2377, 4716, 4748
BpmI CTGGAG 5 cut(s) 122, 2475, 2846, 4609, 4743
Bpu10I CCTNAGC 1 cut(s) 1117
Bpu14I TTCGAA 1 cut(s) 4437
BpuEI CTTGAG 8 cut(s) 814, 1162, 1288, 1656, 1666, 2420, 3196, 3881
BpuMI CCSGG 1 cut(s) 4578
BsaAI YACGTR 1 cut(s) 308
BsaBI GATNNNNATC 1 cut(s) 63
BsaWI WCCGGW 3 cut(s) 3654, 3706, 4680
BsaXI ACNNNNNCTCC 4 cut(s) 1494, 1524, 4582, 4612
Bse118I RCCGGY 3 cut(s) 2650, 3677, 3706
Bse3DI GCAATG 1 cut(s) 2202
Bse8I GATNNNNATC 1 cut(s) 63
BseAI TCCGGA 1 cut(s) 3654
BseJI GATNNNNATC 1 cut(s) 63
BseMI GCAATG 1 cut(s) 2202
BseMII CTCAG 9 cut(s) 468, 480, 899, 1131, 1227, 2329, 2801, 4445, 4749
BseRI GAGGAG 7 cut(s) 365, 510, 590, 754, 1428, 2616, 4268
BseSI GKGCMC 3 cut(s) 1367, 4526, 4618
BseYI CCCAGC 2 cut(s) 2303, 4808
BsgI GTGCAG 2 cut(s) 437, 4713
Bsh1236I CGCG 2 cut(s) 1023, 2991
BshNI GGYRCC 1 cut(s) 2180
BshTI ACCGGT 1 cut(s) 3706
BsiHKAI GWGCWC 4 cut(s) 1367, 2491, 4142, 4526
BsiHKCI CYCGRG 3 cut(s) 685, 3396, 4244
BsiSI CCGG 8 cut(s) 374, 2651, 3655, 3678, 3707, 4578, 4681, 4917
BsiWI CGTACG 1 cut(s) 3454
BslFI GGGAC 3 cut(s) 571, 702, 3233
BsmAI GTCTC 4 cut(s) 748, 2509, 2876, 3336
BsmBI CGTCTC 1 cut(s) 2509
BsmFI GGGAC 3 cut(s) 571, 702, 3233
BsoBI CYCGRG 3 cut(s) 685, 3396, 4244
Bsp119I TTCGAA 1 cut(s) 4437
Bsp1286I GDGCHC 5 cut(s) 1367, 2491, 4142, 4526, 4618
Bsp13I TCCGGA 1 cut(s) 3654
Bsp1407I TGTACA 3 cut(s) 1420, 3761, 4987
Bsp19I CCATGG 3 cut(s) 1346, 3298, 4562
Bsp68I TCGCGA 1 cut(s) 1023
BspACI CCGC 6 cut(s) 730, 1194, 2177, 2845, 4334, 4904
BspCNI CTCAG 9 cut(s) 469, 479, 898, 1130, 1226, 2328, 2800, 4444, 4748
BspEI TCCGGA 1 cut(s) 3654
BspFNI CGCG 2 cut(s) 1023, 2991
BspHI TCATGA 2 cut(s) 2994, 3256
BspMAI CTGCAG 2 cut(s) 118, 2417
BspMI ACCTGC 3 cut(s) 2338, 3377, 4033
BspOI GCTAGC 1 cut(s) 4709
BspQI GCTCTTC 2 cut(s) 2802, 4975
BspT104I TTCGAA 1 cut(s) 4437
BspT107I GGYRCC 1 cut(s) 2180
BspTI CTTAAG 1 cut(s) 613
BsrDI GCAATG 1 cut(s) 2202
BsrFI RCCGGY 3 cut(s) 2650, 3677, 3706
BsrGI TGTACA 3 cut(s) 1420, 3761, 4987
BssAI RCCGGY 3 cut(s) 2650, 3677, 3706
BssNAI GTATAC 2 cut(s) 3860, 5025
BssSI CACGAG 2 cut(s) 423, 1848
BssT1I CCWWGG 5 cut(s) 23, 1346, 2729, 3298, 4562
Bst1107I GTATAC 2 cut(s) 3860, 5025
Bst2BI CACGAG 2 cut(s) 423, 1848
Bst6I CTCTTC 5 cut(s) 1457, 2802, 3087, 4449, 4975
BstAFI CTTAAG 1 cut(s) 613
BstAPI GCANNNNNTGC 1 cut(s) 3294
BstAUI TGTACA 3 cut(s) 1420, 3761, 4987
BstBAI YACGTR 1 cut(s) 308
BstBI TTCGAA 1 cut(s) 4437
BstDSI CCRYGG 4 cut(s) 1346, 3298, 3527, 4562
BstEII GGTNACC 1 cut(s) 3364
BstENI CCTNNNNNAGG 3 cut(s) 552, 3214, 4799
BstFNI CGCG 2 cut(s) 1023, 2991
BstH2I RGCGCY 1 cut(s) 4511
BstHHI GCGC 2 cut(s) 4156, 4510
BstMAI GTCTC 4 cut(s) 748, 2509, 2876, 3336
BstNSI RCATGY 6 cut(s) 875, 2161, 2370, 3288, 4816, 4883
BstPI GGTNACC 1 cut(s) 3364
BstSFI CTRYAG 4 cut(s) 114, 2172, 2413, 4770
BstSLI GKGCMC 3 cut(s) 1367, 4526, 4618
BstUI CGCG 2 cut(s) 1023, 2991
BstV2I GAAGAC 4 cut(s) 37, 1061, 3599, 3919
BstX2I RGATCY 8 cut(s) 502, 1216, 1435, 1624, 2202, 3717, 3886, 4501
BstXI CCANNNNNNTGG 1 cut(s) 4403
BstYI RGATCY 8 cut(s) 502, 1216, 1435, 1624, 2202, 3717, 3886, 4501
BstZ17I GTATAC 2 cut(s) 3860, 5025
BsuI GTATCC 2 cut(s) 578, 3268
BtgI CCRYGG 4 cut(s) 1346, 3298, 3527, 4562
BtgZI GCGATG 1 cut(s) 878
BtrI CACGTC 1 cut(s) 2519
BtsI GCAGTG 2 cut(s) 123, 4143
BtuMI TCGCGA 1 cut(s) 1023
BveI ACCTGC 3 cut(s) 2338, 3377, 4033
CaiI CAGNNNCTG 1 cut(s) 4511
CciI TCATGA 2 cut(s) 2994, 3256
CfoI GCGC 2 cut(s) 4156, 4510
Cfr10I RCCGGY 3 cut(s) 2650, 3677, 3706
CseI GACGC 2 cut(s) 2585, 2980
CsiI ACCWGGT 2 cut(s) 2524, 4794
CspAI ACCGGT 1 cut(s) 3706
CspCI CAANNNNNGTGG 2 cut(s) 4132, 4167
DraI TTTAAA 2 cut(s) 1876, 2443
DriI GACNNNNNGTC 1 cut(s) 469
EaeI YGGCCR 3 cut(s) 2069, 2846, 3675
Eam1104I CTCTTC 5 cut(s) 1457, 2802, 3087, 4449, 4975
Eam1105I GACNNNNNGTC 1 cut(s) 469
EarI CTCTTC 5 cut(s) 1457, 2802, 3087, 4449, 4975
Eco130I CCWWGG 5 cut(s) 23, 1346, 2729, 3298, 4562
Eco32I GATATC 2 cut(s) 126, 2810
Eco47I GGWCC 7 cut(s) 689, 1093, 2522, 4160, 4475, 4712, 4798
Eco57I CTGAAG 9 cut(s) 362, 1653, 2191, 2574, 2586, 2783, 3143, 3810, 3843
Eco88I CYCGRG 3 cut(s) 685, 3396, 4244
Eco91I GGTNACC 1 cut(s) 3364
EcoNI CCTNNNNNAGG 3 cut(s) 552, 3214, 4799
EcoO65I GGTNACC 1 cut(s) 3364
EcoRV GATATC 2 cut(s) 126, 2810
EcoT14I CCWWGG 5 cut(s) 23, 1346, 2729, 3298, 4562
EcoT22I ATGCAT 2 cut(s) 1313, 2159
ErhI CCWWGG 5 cut(s) 23, 1346, 2729, 3298, 4562
Esp3I CGTCTC 1 cut(s) 2509
FaqI GGGAC 3 cut(s) 571, 702, 3233
FauI CCCGC 3 cut(s) 723, 2170, 4911
FauNDI CATATG 1 cut(s) 3614
FbaI TGATCA 2 cut(s) 3078, 3253
FblI GTMKAC 3 cut(s) 3853, 3859, 5024
GlaI GCGC 2 cut(s) 4155, 4509
GsaI CCCAGC 2 cut(s) 2307, 4812
GsuI CTGGAG 5 cut(s) 122, 2475, 2846, 4609, 4743
HaeII RGCGCY 1 cut(s) 4511
HapII CCGG 8 cut(s) 374, 2651, 3655, 3678, 3707, 4578, 4681, 4917
HgaI GACGC 2 cut(s) 2585, 2980
HhaI GCGC 2 cut(s) 4156, 4510
Hin6I GCGC 2 cut(s) 4154, 4508
HinP1I GCGC 2 cut(s) 4154, 4508
HincII GTYRAC 6 cut(s) 3429, 3506, 3747, 3854, 4353, 4696
HindII GTYRAC 6 cut(s) 3429, 3506, 3747, 3854, 4353, 4696
HindIII AAGCTT 7 cut(s) 2037, 2284, 2927, 3155, 3177, 4260, 4639
HpaI GTTAAC 1 cut(s) 3747
HpaII CCGG 8 cut(s) 374, 2651, 3655, 3678, 3707, 4578, 4681, 4917
HphI GGTGA 8 cut(s) 245, 269, 461, 1603, 2723, 3358, 4307, 4418
Hpy99I CGWCG 3 cut(s) 270, 2579, 3858
HpyCH4IV ACGT 7 cut(s) 43, 307, 2518, 3453, 3630, 3749, 3856
HpySE526I ACGT 7 cut(s) 43, 307, 2518, 3453, 3630, 3749, 3856
HspAI GCGC 2 cut(s) 4154, 4508
Kpn2I TCCGGA 1 cut(s) 3654
Ksp22I TGATCA 2 cut(s) 3078, 3253
KspAI GTTAAC 1 cut(s) 3747
LguI GCTCTTC 2 cut(s) 2802, 4975
LmnI GCTCC 9 cut(s) 523, 671, 810, 1415, 2494, 4137, 4255, 4590, 4724
MabI ACCWGGT 2 cut(s) 2524, 4794
MaeII ACGT 7 cut(s) 43, 307, 2518, 3453, 3630, 3749, 3856
MfeI CAATTG 1 cut(s) 561
MflI RGATCY 8 cut(s) 502, 1216, 1435, 1624, 2202, 3717, 3886, 4501
MhlI GDGCHC 5 cut(s) 1367, 2491, 4142, 4526, 4618
MlsI TGGCCA 1 cut(s) 2071
MluI ACGCGT 1 cut(s) 2989
MluNI TGGCCA 1 cut(s) 2071
MmeI TCCRAC 4 cut(s) 684, 2598, 3428, 3945
Mox20I TGGCCA 1 cut(s) 2071
Mph1103I ATGCAT 2 cut(s) 1313, 2159
MroI TCCGGA 1 cut(s) 3654
MroXI GAANNNNTTC 2 cut(s) 174, 2204
MscI TGGCCA 1 cut(s) 2071
MslI CAYNNNNRTG 6 cut(s) 876, 944, 1316, 3326, 3342, 3465
Msp20I TGGCCA 1 cut(s) 2071
MspA1I CMGCKG 3 cut(s) 2171, 2564, 3172
MspCI CTTAAG 1 cut(s) 613
MspI CCGG 8 cut(s) 374, 2651, 3655, 3678, 3707, 4578, 4681, 4917
MssI GTTTAAAC 2 cut(s) 1876, 2443
MunI CAATTG 1 cut(s) 561
MvnI CGCG 2 cut(s) 1023, 2991
NciI CCSGG 1 cut(s) 4578
NcoI CCATGG 3 cut(s) 1346, 3298, 4562
NdeI CATATG 1 cut(s) 3614
NheI GCTAGC 1 cut(s) 4705
NmuCI GTSAC 6 cut(s) 461, 2643, 2918, 3308, 3364, 3556
NruI TCGCGA 1 cut(s) 1023
NsiI ATGCAT 2 cut(s) 1313, 2159
NspI RCATGY 6 cut(s) 875, 2161, 2370, 3288, 4816, 4883
NspV TTCGAA 1 cut(s) 4437
PaeI GCATGC 2 cut(s) 875, 4883
PaeR7I CTCGAG 1 cut(s) 3396
PagI TCATGA 2 cut(s) 2994, 3256
PaqCI CACCTGC 1 cut(s) 3377
PciSI GCTCTTC 2 cut(s) 2802, 4975
PcsI WCGNNNNNNNCGW 1 cut(s) 3859
PdmI GAANNNNTTC 2 cut(s) 174, 2204
Pfl23II CGTACG 1 cut(s) 3454
PflFI GACNNNGTC 2 cut(s) 3598, 4796
PflMI CCANNNNNTGG 1 cut(s) 4721
PfoI TCCNGGA 1 cut(s) 2695
PinAI ACCGGT 1 cut(s) 3706
PmeI GTTTAAAC 2 cut(s) 1876, 2443
Ppu21I YACGTR 1 cut(s) 308
PspEI GGTNACC 1 cut(s) 3364
PspFI CCCAGC 2 cut(s) 2303, 4808
PspLI CGTACG 1 cut(s) 3454
PspXI VCTCGAGB 1 cut(s) 3396
PstI CTGCAG 2 cut(s) 118, 2417
PstNI CAGNNNCTG 1 cut(s) 4511
PsuI RGATCY 8 cut(s) 502, 1216, 1435, 1624, 2202, 3717, 3886, 4501
PsyI GACNNNGTC 2 cut(s) 3598, 4796
PvuII CAGCTG 3 cut(s) 2171, 2564, 3172
RruI TCGCGA 1 cut(s) 1023
RseI CAYNNNNRTG 6 cut(s) 876, 944, 1316, 3326, 3342, 3465
SalI GTCGAC 1 cut(s) 3852
SapI GCTCTTC 2 cut(s) 2802, 4975
ScaI AGTACT 2 cut(s) 854, 1520
SduI GDGCHC 5 cut(s) 1367, 2491, 4142, 4526, 4618
SexAI ACCWGGT 2 cut(s) 2524, 4794
SfcI CTRYAG 4 cut(s) 114, 2172, 2413, 4770
Sfr274I CTCGAG 1 cut(s) 3396
SfuI TTCGAA 1 cut(s) 4437
SinI GGWCC 7 cut(s) 689, 1093, 2522, 4160, 4475, 4712, 4798
SlaI CTCGAG 1 cut(s) 3396
SmiMI CAYNNNNRTG 6 cut(s) 876, 944, 1316, 3326, 3342, 3465
SpeI ACTAGT 1 cut(s) 1552
SphI GCATGC 2 cut(s) 875, 4883
SsiI CCGC 6 cut(s) 730, 1194, 2177, 2845, 4334, 4904
SspI AATATT 1 cut(s) 1732
StyI CCWWGG 5 cut(s) 23, 1346, 2729, 3298, 4562
TaiI ACGT 7 cut(s) 46, 310, 2521, 3456, 3633, 3752, 3859
TaqII GACCGA 2 cut(s) 49, 4370
TatI WGTACW 9 cut(s) 852, 1184, 1420, 1518, 1549, 3109, 3761, 4685, 4987
TauI GCSGC 1 cut(s) 2848
TseFI GTSAC 6 cut(s) 461, 2643, 2918, 3308, 3364, 3556
Tsp45I GTSAC 6 cut(s) 461, 2643, 2918, 3308, 3364, 3556
TspGWI ACGGA 2 cut(s) 2967, 4008
Tth111I GACNNNGTC 2 cut(s) 3598, 4796
Van91I CCANNNNNTGG 1 cut(s) 4721
Vha464I CTTAAG 1 cut(s) 613
VneI GTGCAC 2 cut(s) 1363, 4522
VpaK11BI GGWCC 7 cut(s) 689, 1093, 2522, 4160, 4475, 4712, 4798
XagI CCTNNNNNAGG 3 cut(s) 552, 3214, 4799
XapI RAATTY 8 cut(s) 367, 694, 905, 966, 3086, 3816, 3955, 4325
XbaI TCTAGA 3 cut(s) 748, 1219, 2275
XceI RCATGY 6 cut(s) 875, 2161, 2370, 3288, 4816, 4883
XcmI CCANNNNNNNNNTGG 2 cut(s) 1344, 2334
XhoI CTCGAG 1 cut(s) 3396
XmaJI CCTAGG 2 cut(s) 23, 2729
XmiI GTMKAC 3 cut(s) 3853, 3859, 5024
XmnI GAANNNNTTC 2 cut(s) 174, 2204
ZrmI AGTACT 2 cut(s) 854, 1520
Zsp2I ATGCAT 2 cut(s) 1313, 2159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.