Rmu_sc0008989.1_g000001

WSTF, HB1, Itc1p, MBD9 motif 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008989.1
OG0007748
Physical Location & Seq
Forward (+)
90 .. 6285
6196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008989.1_g000001.1.cds

Sequence Viewer

Length: 4176 bp
atgggatatgtaaaaggacaagagtggaaaggtttctatgatgaggttttggacagagagtattatttattatcagttgataggaagttaagcattttgcaaatcatttgtgatgatgtcttagacagtatagatattagagctgaattagacatgcgtgaagaatcagaagttggaatagattatgatgccgaagcaaccagtgctcttgtaaatgggccaagaagggtccatccgagatattccaaaacttctgcatgcaaggacagagaagcaatggaaattgctactgaatcccatgatacaaaattatctggtaacttaaattcactaggttccaaagttgctaaaggggagtttgatgctactgatgttgattcggattgtaactctgatgaatgtcggctttgtggtatggatgggacattgctttgctgtgatggatgcccatctgcctaccatacgaggtgtataggtgtgatgaaactgtcgataccagaaggatcctggtattgtcctgagtgcactatcaacaaaattgggccaactatcacagttggaacatcagttaaaggagcacaattgtttgggatagatacctacgagcacatcttcatgggtacttgcaaccacttacttgtgcttaaggaaactattaacacacaaccatgtcttagatattacaatcagcatgacattccaaaagtcctgaaagttctttgttcatctgggcaaaatacatctttttatctgggcttgtgcaaggcaattttagaatattggaatatcccagaaagcatcttatctctttcagagctggctgaatcaatgactaatttggcgaagataaaggaagatgcgaacttttgtggccagtcacttcctctgtctggcaaggattgtgataaagttatggatatggttgaggctgggaactgtgaaacttatgtaaatgaagaccatttaggtaaagcagtttcatctttcgattgccatggtgatagtacaccacaggagtactcacataggaatatggagattgatgaaaggaataaaatggaatctgctgtttcgactggttctgtcacccagcaagctgatccatcttacttggtccacagaagctcagttgacagatcaactgcaattgaccgaagcacatgcacaccagggaacgtcaacagtggtaacaaagtgcatgcaaatggtatgcgtttttcagtaacttcacaaaatgaagaaggcaatcatataggaaaggtttactccacttcagttgatgattgcaaatacaagggttctttctttaaaccccatgcatacataaattactatgtgcatggggattttgctgcatctgctgctgccaaactggctgtactttcatcagaagaagctcggggttcagatgtccaggcttcaggcaatccccggaaagttgcatcatcaaacaatttatggcaagcaaaagccttctcactaacagcctcacgtttcttctggccaagttttgaaaagaagcttgtggaggttccaagagagaggtgtggttggtgtctttcttgtaaggctccagttgcaagcaagagaggatgcatgctaaatcatgcttgtttgagtgccactaaaggtgctatgaagatccttgccagccttcgtcctataaagagtgtggaggggaatcttgtaagcatcgcaacatacatcttatacatggaggagagtttgcatggtctaataactggcccctttctcaatgaaaattttaggaaacaattccgccaacaagtttatgaagcatcaacctgcagtgcaataaaagtcctattgctcaaacttgaacaaaacatccgaacaattgctctttccggggagtggattaaactggtagatgatttgctggttgaatcttctgtgattcaaggtcctacgtgcactgttggaacaacacaaagacgtgcaccatacagcaggcggagcaggaaacagagtgcaattcaagaagttatagatgatgactgcaatgacaagagttttgtatggtggcaaggagggaagctgtcaaaaatcatattccagagagcaatcttggctcgctcattggttaaaaaagcagctcgccaaggtggatcgaggaaaatttttggtgtatcttacgctgatggtcctgatattcctaaaagaagcagacaatctgtatggagggctgcagttgaactgagcaagaacggatcccagcttgcagttcaggttagatacttggactatcatttgaggtggagtgatcttgttcgtcctgagcagaacctccttgatgggaaagctgcagaggcagaagcttctgcttttagaaatgcaagtatatgtgataaaaaaatgttaaagaacaacatcgtctatggggttgcatttggtagtcaaaagcatctgcctaaccgtgtaatgaaaaatatcattgagacagagcagaatcaggatggaactaacaagttctggtttcttgaatcacgtattcctttatatttgattaaggaatatgaagaaagtgtaagtaaagtgtctattccattagctcaggagcctaatctattgcacaagttaaagagaaggcagcggaaagcaacccgcagggacatatttttttatctcgagtgtaaaagagacaatctggacttgtctgcctgttctatgtgtcaactggatattttattgcgcaatgcagtcaagtgcagtgcctgtcaaggttattgccatgagggctgtaccataagttcaacagtttctacaaatgaggaagttgagttcttgatcacttgcaagcggtgctaccatgcgaaagctcttgcccagaagcaaaagtttaaggagtttccaactagtcctttgcccttgcaaatgaaagaatatcatactccactgacagtcacaactggtggaaggcctaaaaattataaccaatcattaacctccatcagggttcaggagcctcgttctgagattaaacaagctactagagactcgggtttggcaacaaaaaaacgacgtcccatttgttcttggggtgttatatggaagaagaagactccggaaactggcaccgacttcaggattaataacatactcctcgggggtcgttccgatgtgcatgggttgaaacctgtttgccacttgtgccatatgccatatctctccgatctgacatatatacgctgtgaatcttgcaaaaattggtaccatgctgaagctgtcgaacttgaggagtcaaagatctgtgaagtggcaggcttcaagtgttgcaagtgtcgcaggataaaatcgcctctttgtccttatactgatcttaaagacaagaccttgcaagagagcaagaagattcgcaataagcgttcaaagcaagaaaatcttggagaggactcagattctgcaaccaattttgattcagaggtgtttgaacctgctactccagtgtttcccatggaggaagtctccattcaggatgatgatcctcttctttttgctctctcaagagtggagctagttccagaacacaattcagaagttaatgctgaatgggatactgctgggccagggccaagaaaattacctgtgagaaggcatgttaagcgtgaagaggacttggatatatattgtgacagtaataaatctcatgctgaaaaaactatgcatgatgaaacaaattacctgtcggaaccgatggagattgcggcattccctcatgtggaatgggatacttccatgaacagcatcaatggtgagataatggaacagtatgaagatctgaactacgatatgatggaaccgcaaactgtctttactatcaatgagttgctggcacctgatgatggcgacctttttgatggagttgaaacatttgcggatttaccagaaaatctggaaaatccatatacaacttcacagcatgtaggccctgagcaatatgatatggccactttcacagatgaatcaaagtctgcaattcctgaaacatctgctgttaatatgatgcaatgtcagatatgtttacatgcagaaccagctcctgatctttcttgccagaactgtgggctattaattcataaccgttgttccccttggattgagtcatcatctcagaataatagctggaagtgtggacagtgccgggagtggaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009941 GO:0009987 GO:0010019 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016589 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019867 GO:0023052 GO:0031010 GO:0031090 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031967 GO:0031968 GO:0031969 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0035064 GO:0042170 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051716 GO:0060255 GO:0060322 GO:0065007 GO:0070013 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0098588 GO:0098805 GO:0140030 GO:0140034 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1904949 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT PHD WHIM1

Protein Analysis

1391

Amino Acids

156.42

Weight (kDa)

6.12

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2952
AatII GACGTC 1 cut(s) 3046
Acc16I TGCGCA 1 cut(s) 2714
Acc36I ACCTGC 2 cut(s) 1814, 3463
Acc65I GGTACC 1 cut(s) 3231
AccB1I GGYRCC 3 cut(s) 3095, 3231, 3853
AccIII TCCGGA 1 cut(s) 3085
AciI CCGC 8 cut(s) 1780, 1975, 2614, 2626, 2821, 3725, 3821, 3896
AclWI GGATC 8 cut(s) 498, 511, 1094, 1636, 2137, 2226, 2239, 3497
AcoI YGGCCR 3 cut(s) 871, 1502, 3966
AcsI RAATTY 3 cut(s) 325, 1762, 2139
AcuI CTGAAG 4 cut(s) 1257, 1404, 3088, 3261
AcyI GRCGYC 1 cut(s) 3043
AfaI GTAC 6 cut(s) 622, 1006, 1019, 1380, 2764, 3233
AfiI CCNNNNNNNGG 7 cut(s) 890, 1875, 2973, 3092, 3105, 3739, 3863
AflII CTTAAG 1 cut(s) 644
AhlI ACTAGT 1 cut(s) 2876
AjiI CACGTC 1 cut(s) 1958
AjnI CCWGG 4 cut(s) 506, 1168, 1413, 3586
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
AloI GAACNNNNNNTCC 4 cut(s) 1833, 1865, 2786, 2818
Alw21I GWGCWC 6 cut(s) 208, 527, 580, 609, 1937, 1963
Alw26I GTCTC 4 cut(s) 2453, 2655, 3009, 3490
Alw44I GTGCAC 3 cut(s) 523, 1933, 1959
AlwI GGATC 8 cut(s) 498, 511, 1094, 1636, 2137, 2226, 2239, 3497
AlwNI CAGNNNCTG 3 cut(s) 2736, 3422, 4061
Ama87I CYCGRG 4 cut(s) 1398, 2648, 3019, 3125
Aor13HI TCCGGA 1 cut(s) 3085
ApaLI GTGCAC 3 cut(s) 523, 1933, 1959
ApeKI GCWGC 7 cut(s) 1352, 1361, 1364, 2114, 2207, 2324, 2611
ApoI RAATTY 3 cut(s) 325, 1762, 2139
ArsI GACNNNNNNTTYG 6 cut(s) 2018, 2050, 3033, 3065, 3689, 3721
AseI ATTAAT 2 cut(s) 3111, 4091
Asp700I GAANNNNTTC 2 cut(s) 32, 1775
Asp718I GGTACC 1 cut(s) 3231
AspLEI GCGC 1 cut(s) 2715
AsuC2I CCSGG 3 cut(s) 1432, 1870, 4163
AsuHPI GGTGA 3 cut(s) 1010, 1078, 3785
AvaI CYCGRG 4 cut(s) 1398, 2648, 3019, 3125
AvaII GGWCC 4 cut(s) 229, 1114, 1925, 2165
BaeGI GKGCMC 3 cut(s) 527, 1937, 1963
BalI TGGCCA 3 cut(s) 873, 1504, 3968
BamHI GGATCC 2 cut(s) 503, 2231
BanI GGYRCC 3 cut(s) 3095, 3231, 3853
BbsI GAAGAC 2 cut(s) 963, 3086
Bbv12I GWGCWC 6 cut(s) 208, 527, 580, 609, 1937, 1963
BbvI GCAGC 7 cut(s) 1339, 1348, 1351, 2126, 2194, 2311, 2623
BcgI CGANNNNNNTGC 2 cut(s) 1143, 1177
BciT130I CCWGG 4 cut(s) 508, 1170, 1415, 3588
BciVI GTATCC 2 cut(s) 3568, 3742
BclI TGATCA 1 cut(s) 2808
BcnI CCSGG 3 cut(s) 1432, 1870, 4163
BcoDI GTCTC 4 cut(s) 2453, 2655, 3009, 3490
BcuI ACTAGT 1 cut(s) 2876
BfaI CTAG 4 cut(s) 332, 2877, 3012, 3536
BfmI CTRYAG 3 cut(s) 1807, 2208, 2325
BfrI CTTAAG 1 cut(s) 644
BfuAI ACCTGC 2 cut(s) 1814, 3463
BfuI GTATCC 2 cut(s) 3568, 3742
BglI GCCNNNNNGGC 2 cut(s) 1373, 2757
BglII AGATCT 2 cut(s) 3267, 3796
BisI GCNGC 8 cut(s) 1353, 1362, 1365, 2115, 2208, 2325, 2612, 3726
BlsI GCNGC 8 cut(s) 1354, 1363, 1366, 2116, 2209, 2326, 2613, 3727
BmcAI AGTACT 1 cut(s) 1019
Bme1390I CCNGG 7 cut(s) 508, 1170, 1415, 1432, 1870, 3588, 4163
Bme18I GGWCC 4 cut(s) 229, 1114, 1925, 2165
BmeT110I CYCGRG 4 cut(s) 1398, 2648, 3019, 3125
BmgBI CACGTC 1 cut(s) 1958
BmrFI CCNGG 7 cut(s) 508, 1170, 1415, 1432, 1870, 3588, 4163
BpiI GAAGAC 2 cut(s) 963, 3086
BplI GAGNNNNNCTC 2 cut(s) 3470, 3502
BpmI CTGGAG 2 cut(s) 1557, 3447
Bpu10I CCTNAGC 3 cut(s) 2298, 2574, 3951
BpuEI CTTGAG 2 cut(s) 3275, 3508
BpuMI CCSGG 3 cut(s) 1432, 1870, 4163
BsaAI YACGTR 2 cut(s) 1932, 2510
BsaBI GATNNNNATC 2 cut(s) 448, 3501
BsaHI GRCGYC 1 cut(s) 3043
BsaJI CCNNGG 9 cut(s) 994, 1169, 1430, 1869, 2122, 3124, 3474, 3587, 4112
BsaWI WCCGGW 1 cut(s) 3085
BsaXI ACNNNNNCTCC 1 cut(s) 4157
Bsc4I CCNNNNNNNGG 7 cut(s) 890, 1875, 2973, 3092, 3105, 3739, 3863
Bse3DI GCAATG 5 cut(s) 282, 425, 2029, 2722, 4034
Bse8I GATNNNNATC 2 cut(s) 448, 3501
BseAI TCCGGA 1 cut(s) 3085
BseBI CCWGG 4 cut(s) 508, 1170, 1415, 3588
BseDI CCNNGG 9 cut(s) 994, 1169, 1430, 1869, 2122, 3124, 3474, 3587, 4112
BseGI GGATG 7 cut(s) 232, 424, 449, 1598, 1848, 2482, 3502
BseJI GATNNNNATC 2 cut(s) 448, 3501
BseLI CCNNNNNNNGG 7 cut(s) 890, 1875, 2973, 3092, 3105, 3739, 3863
BseMI GCAATG 5 cut(s) 282, 425, 2029, 2722, 4034
BseMII CTCAG 9 cut(s) 510, 1140, 2210, 2289, 2588, 2985, 3429, 3942, 4145
BseRI GAGGAG 3 cut(s) 1733, 3113, 3272
BseSI GKGCMC 3 cut(s) 527, 1937, 1963
BseXI GCAGC 7 cut(s) 1339, 1348, 1351, 2126, 2194, 2311, 2623
BseYI CCCAGC 4 cut(s) 929, 1089, 2235, 3581
BsgI GTGCAG 1 cut(s) 2749
BshNI GGYRCC 3 cut(s) 3095, 3231, 3853
BsiHKAI GWGCWC 6 cut(s) 208, 527, 580, 609, 1937, 1963
BsiHKCI CYCGRG 4 cut(s) 1398, 2648, 3019, 3125
BsiSI CCGG 4 cut(s) 1432, 1869, 3086, 4162
BslFI GGGAC 3 cut(s) 436, 2645, 3030
BslI CCNNNNNNNGG 7 cut(s) 890, 1875, 2973, 3092, 3105, 3739, 3863
BsmAI GTCTC 4 cut(s) 2453, 2655, 3009, 3490
BsmFI GGGAC 3 cut(s) 436, 2645, 3030
BsmI GAATGC 1 cut(s) 3728
BsoBI CYCGRG 4 cut(s) 1398, 2648, 3019, 3125
Bsp1286I GDGCHC 6 cut(s) 208, 527, 580, 609, 1937, 1963
Bsp13I TCCGGA 1 cut(s) 3085
Bsp19I CCATGG 2 cut(s) 994, 3474
BspACI CCGC 8 cut(s) 1780, 1975, 2614, 2626, 2821, 3725, 3821, 3896
BspCNI CTCAG 9 cut(s) 511, 1139, 2211, 2290, 2587, 2986, 3428, 3943, 4144
BspEI TCCGGA 1 cut(s) 3085
BspMAI CTGCAG 3 cut(s) 1811, 2212, 2329
BspMI ACCTGC 2 cut(s) 1814, 3463
BspPI GGATC 8 cut(s) 498, 511, 1094, 1636, 2137, 2226, 2239, 3497
BspT107I GGYRCC 3 cut(s) 3095, 3231, 3853
BspTI CTTAAG 1 cut(s) 644
BsrDI GCAATG 5 cut(s) 282, 425, 2029, 2722, 4034
BssECI CCNNGG 9 cut(s) 994, 1169, 1430, 1869, 2122, 3124, 3474, 3587, 4112
BssNI GRCGYC 1 cut(s) 3043
BssT1I CCWWGG 4 cut(s) 994, 2122, 3474, 4112
Bst2UI CCWGG 4 cut(s) 508, 1170, 1415, 3588
Bst6I CTCTTC 2 cut(s) 3513, 3624
BstACI GRCGYC 1 cut(s) 3043
BstAFI CTTAAG 1 cut(s) 644
BstAPI GCANNNNNTGC 3 cut(s) 203, 1361, 2823
BstBAI YACGTR 2 cut(s) 1932, 2510
BstDSI CCRYGG 2 cut(s) 994, 3474
BstENI CCTNNNNNAGG 1 cut(s) 2971
BstF5I GGATG 7 cut(s) 232, 424, 449, 1598, 1848, 2482, 3502
BstHHI GCGC 1 cut(s) 2715
BstMAI GTCTC 4 cut(s) 2453, 2655, 3009, 3490
BstNI CCWGG 4 cut(s) 508, 1170, 1415, 3588
BstNSI RCATGY 8 cut(s) 157, 261, 1164, 1202, 1600, 3620, 3944, 4049
BstSCI CCNGG 7 cut(s) 506, 1168, 1413, 1430, 1868, 3586, 4161
BstSFI CTRYAG 3 cut(s) 1807, 2208, 2325
BstSLI GKGCMC 3 cut(s) 527, 1937, 1963
BstV1I GCAGC 7 cut(s) 1339, 1348, 1351, 2126, 2194, 2311, 2623
BstV2I GAAGAC 2 cut(s) 963, 3086
BstX2I RGATCY 5 cut(s) 503, 1641, 2231, 3267, 3796
BstXI CCANNNNNNTGG 1 cut(s) 4082
BstYI RGATCY 5 cut(s) 503, 1641, 2231, 3267, 3796
BsuI GTATCC 2 cut(s) 3568, 3742
BtgI CCRYGG 2 cut(s) 994, 3474
BtgZI GCGATG 1 cut(s) 1678
BtrI CACGTC 1 cut(s) 1958
BtsCI GGATG 7 cut(s) 232, 424, 449, 1598, 1848, 2482, 3502
BtsI GCAGTG 2 cut(s) 1816, 2737
BtsIMutI CAGTG 8 cut(s) 208, 1189, 1816, 1935, 2737, 2915, 3471, 4163
BveI ACCTGC 2 cut(s) 1814, 3463
CaiI CAGNNNCTG 3 cut(s) 2736, 3422, 4061
CfoI GCGC 1 cut(s) 2715
Csp6I GTAC 6 cut(s) 621, 1005, 1018, 1379, 2763, 3232
CspCI CAANNNNNGTGG 2 cut(s) 1258, 1293
CviQI GTAC 6 cut(s) 621, 1005, 1018, 1379, 2763, 3232
DraI TTTAAA 1 cut(s) 1309
EaeI YGGCCR 3 cut(s) 871, 1502, 3966
Eam1104I CTCTTC 2 cut(s) 3513, 3624
EarI CTCTTC 2 cut(s) 3513, 3624
EciI GGCGGA 2 cut(s) 1769, 1990
Eco130I CCWWGG 4 cut(s) 994, 2122, 3474, 4112
Eco147I AGGCCT 1 cut(s) 2941
Eco47I GGWCC 4 cut(s) 229, 1114, 1925, 2165
Eco57I CTGAAG 4 cut(s) 1257, 1404, 3088, 3261
Eco88I CYCGRG 4 cut(s) 1398, 2648, 3019, 3125
EcoNI CCTNNNNNAGG 1 cut(s) 2971
EcoO109I RGGNCCY 2 cut(s) 1925, 3947
EcoRII CCWGG 4 cut(s) 506, 1168, 1413, 3586
EcoT14I CCWWGG 4 cut(s) 994, 2122, 3474, 4112
EcoT22I ATGCAT 3 cut(s) 1321, 1598, 3687
ErhI CCWWGG 4 cut(s) 994, 2122, 3474, 4112
FalI AAGNNNNNCTT 2 cut(s) 3387, 3419
FaqI GGGAC 3 cut(s) 436, 2645, 3030
FauI CCCGC 1 cut(s) 2633
FauNDI CATATG 1 cut(s) 3177
FbaI TGATCA 1 cut(s) 2808
Fnu4HI GCNGC 8 cut(s) 1353, 1362, 1365, 2115, 2208, 2325, 2612, 3726
FokI GGATG 7 cut(s) 219, 431, 456, 1605, 1835, 2489, 3509
Fsp4HI GCNGC 8 cut(s) 1353, 1362, 1365, 2115, 2208, 2325, 2612, 3726
FspBI CTAG 4 cut(s) 332, 2877, 3012, 3536
FspI TGCGCA 1 cut(s) 2714
GlaI GCGC 1 cut(s) 2714
GluI GCNGC 8 cut(s) 1353, 1362, 1365, 2115, 2208, 2325, 2612, 3726
GsaI CCCAGC 4 cut(s) 933, 1093, 2239, 3585
GsuI CTGGAG 2 cut(s) 1557, 3447
HapII CCGG 4 cut(s) 1432, 1869, 3086, 4162
HhaI GCGC 1 cut(s) 2715
Hin1I GRCGYC 1 cut(s) 3043
Hin6I GCGC 1 cut(s) 2713
HinP1I GCGC 1 cut(s) 2713
HincII GTYRAC 3 cut(s) 1132, 1180, 2696
HindII GTYRAC 3 cut(s) 1132, 1180, 2696
HindIII AAGCTT 2 cut(s) 1520, 2337
HpaII CCGG 4 cut(s) 1432, 1869, 3086, 4162
HphI GGTGA 3 cut(s) 1010, 1078, 3785
Hpy99I CGWCG 1 cut(s) 3045
HpyAV CCTTC 8 cut(s) 219, 494, 1235, 1483, 1664, 2601, 2931, 3606
HpyCH4IV ACGT 6 cut(s) 1176, 1492, 1931, 1957, 2509, 3043
HpySE526I ACGT 6 cut(s) 1176, 1492, 1931, 1957, 2509, 3043
Hsp92I GRCGYC 1 cut(s) 3043
HspAI GCGC 1 cut(s) 2713
Kpn2I TCCGGA 1 cut(s) 3085
KpnI GGTACC 1 cut(s) 3235
Ksp22I TGATCA 1 cut(s) 2808
LmnI GCTCC 7 cut(s) 575, 1576, 1977, 2578, 2983, 3532, 4063
Lsp1109I GCAGC 7 cut(s) 1339, 1348, 1351, 2126, 2194, 2311, 2623
MaeI CTAG 4 cut(s) 332, 2877, 3012, 3536
MaeII ACGT 6 cut(s) 1176, 1492, 1931, 1957, 2509, 3043
MaeIII GTNAC 8 cut(s) 317, 386, 876, 1084, 1187, 1222, 2923, 3650
MfeI CAATTG 3 cut(s) 581, 1146, 1857
MflI RGATCY 5 cut(s) 503, 1641, 2231, 3267, 3796
MhlI GDGCHC 6 cut(s) 208, 527, 580, 609, 1937, 1963
MlsI TGGCCA 3 cut(s) 873, 1504, 3968
MluNI TGGCCA 3 cut(s) 873, 1504, 3968
MlyI GAGTC 5 cut(s) 3011, 3076, 3269, 3407, 4130
MmeI TCCRAC 5 cut(s) 154, 538, 1921, 2897, 3687
Mox20I TGGCCA 3 cut(s) 873, 1504, 3968
Mph1103I ATGCAT 3 cut(s) 1321, 1598, 3687
MroI TCCGGA 1 cut(s) 3085
MroXI GAANNNNTTC 2 cut(s) 32, 1775
MscI TGGCCA 3 cut(s) 873, 1504, 3968
MslI CAYNNNNRTG 3 cut(s) 614, 667, 1203
Msp20I TGGCCA 3 cut(s) 873, 1504, 3968
MspA1I CMGCKG 1 cut(s) 2614
MspCI CTTAAG 1 cut(s) 644
MspI CCGG 4 cut(s) 1432, 1869, 3086, 4162
MspR9I CCNGG 7 cut(s) 508, 1170, 1415, 1432, 1870, 3588, 4163
MunI CAATTG 3 cut(s) 581, 1146, 1857
Mva1269I GAATGC 1 cut(s) 3728
MvaI CCWGG 4 cut(s) 508, 1170, 1415, 3588
NciI CCSGG 3 cut(s) 1432, 1870, 4163
NcoI CCATGG 2 cut(s) 994, 3474
NdeI CATATG 1 cut(s) 3177
NmuCI GTSAC 4 cut(s) 876, 1084, 2923, 3650
NsbI TGCGCA 1 cut(s) 2714
NsiI ATGCAT 3 cut(s) 1321, 1598, 3687
NspI RCATGY 8 cut(s) 157, 261, 1164, 1202, 1600, 3620, 3944, 4049
PaeI GCATGC 3 cut(s) 261, 1202, 1600
PaeR7I CTCGAG 1 cut(s) 2648
PceI AGGCCT 1 cut(s) 2941
PcsI WCGNNNNNNNCGW 1 cut(s) 3382
PctI GAATGC 1 cut(s) 3728
PdmI GAANNNNTTC 2 cut(s) 32, 1775
PkrI GCNGC 8 cut(s) 1354, 1363, 1366, 2116, 2209, 2326, 2613, 3727
PleI GAGTC 5 cut(s) 3011, 3076, 3268, 3407, 4129
PpsI GAGTC 5 cut(s) 3011, 3076, 3268, 3407, 4129
Ppu21I YACGTR 2 cut(s) 1932, 2510
PpuMI RGGWCCY 1 cut(s) 1925
PshBI ATTAAT 2 cut(s) 3111, 4091
PsiI TTATAA 1 cut(s) 2952
Psp5II RGGWCCY 1 cut(s) 1925
Psp6I CCWGG 4 cut(s) 506, 1168, 1413, 3586
PspFI CCCAGC 4 cut(s) 929, 1089, 2235, 3581
PspGI CCWGG 4 cut(s) 506, 1168, 1413, 3586
PspPPI RGGWCCY 1 cut(s) 1925
PsrI GAACNNNNNNTAC 2 cut(s) 2755, 2787
PstI CTGCAG 3 cut(s) 1811, 2212, 2329
PstNI CAGNNNCTG 3 cut(s) 2736, 3422, 4061
PsuI RGATCY 5 cut(s) 503, 1641, 2231, 3267, 3796
RsaI GTAC 6 cut(s) 622, 1006, 1019, 1380, 2764, 3233
RsaNI GTAC 6 cut(s) 621, 1005, 1018, 1379, 2763, 3232
RseI CAYNNNNRTG 3 cut(s) 614, 667, 1203
SatI GCNGC 8 cut(s) 1353, 1362, 1365, 2115, 2208, 2325, 2612, 3726
ScaI AGTACT 1 cut(s) 1019
SchI GAGTC 5 cut(s) 3011, 3076, 3269, 3407, 4130
ScrFI CCNGG 7 cut(s) 508, 1170, 1415, 1432, 1870, 3588, 4163
SduI GDGCHC 6 cut(s) 208, 527, 580, 609, 1937, 1963
SfcI CTRYAG 3 cut(s) 1807, 2208, 2325
Sfr274I CTCGAG 1 cut(s) 2648
SinI GGWCC 4 cut(s) 229, 1114, 1925, 2165
SlaI CTCGAG 1 cut(s) 2648
SmiMI CAYNNNNRTG 3 cut(s) 614, 667, 1203
SmlI CTYRAG 4 cut(s) 644, 2648, 3254, 3523
SmoI CTYRAG 4 cut(s) 644, 2648, 3254, 3523
SpeI ACTAGT 1 cut(s) 2876
SphI GCATGC 3 cut(s) 261, 1202, 1600
SseBI AGGCCT 1 cut(s) 2941
SsiI CCGC 8 cut(s) 1780, 1975, 2614, 2626, 2821, 3725, 3821, 3896
SspI AATATT 1 cut(s) 779
SspMI CTAG 4 cut(s) 332, 2877, 3012, 3536
StuI AGGCCT 1 cut(s) 2941
StyD4I CCNGG 7 cut(s) 506, 1168, 1413, 1430, 1868, 3586, 4161
StyI CCWWGG 4 cut(s) 994, 2122, 3474, 4112
TaiI ACGT 6 cut(s) 1179, 1495, 1934, 1960, 2512, 3046
TaqI TCGA 6 cut(s) 491, 987, 1073, 2132, 2649, 3249
TaqII GACCGA 1 cut(s) 1167
TatI WGTACW 3 cut(s) 1004, 1017, 1378
TauI GCSGC 1 cut(s) 3728
TscAI CASTG 8 cut(s) 208, 1189, 1816, 1942, 2737, 2922, 3471, 4163
TseFI GTSAC 4 cut(s) 876, 1084, 2923, 3650
TseI GCWGC 7 cut(s) 1352, 1361, 1364, 2114, 2207, 2324, 2611
Tsp45I GTSAC 4 cut(s) 876, 1084, 2923, 3650
TspGWI ACGGA 1 cut(s) 2244
TspRI CASTG 8 cut(s) 208, 1189, 1816, 1942, 2737, 2922, 3471, 4163
Vha464I CTTAAG 1 cut(s) 644
VneI GTGCAC 3 cut(s) 523, 1933, 1959
VpaK11BI GGWCC 4 cut(s) 229, 1114, 1925, 2165
VspI ATTAAT 2 cut(s) 3111, 4091
XagI CCTNNNNNAGG 1 cut(s) 2971
XapI RAATTY 3 cut(s) 325, 1762, 2139
XceI RCATGY 8 cut(s) 157, 261, 1164, 1202, 1600, 3620, 3944, 4049
XcmI CCANNNNNNNNNTGG 1 cut(s) 504
XhoI CTCGAG 1 cut(s) 2648
XmnI GAANNNNTTC 2 cut(s) 32, 1775
XspI CTAG 4 cut(s) 332, 2877, 3012, 3536
ZraI GACGTC 1 cut(s) 3044
ZrmI AGTACT 1 cut(s) 1019
Zsp2I ATGCAT 3 cut(s) 1321, 1598, 3687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.