WSTF, HB1, Itc1p, MBD9 motif 1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G22760 AT5G22760 AT5G22760 AT5G35210 AT5G35210 |
| fragaria_vesca | FvH4_3g30100 FvH4_3g30100 FvH4_3g30100 FvH4_3g30100 FvH4_3g30100 |
| malus_domestica | MD03G1132800.v1.1 MD11G1155100.v1.1 |
| prunus_persica | Prupe.6G117600_v2.0.a1 |
| pyrus_communis | pycom11g12660 |
| rosa_chinensis | RchiOBHm_Chr5g0055621 |
| rosa_laevigata | RLG00000035000 |
| rosa_multiflora | Rmu_sc0008989.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00024660 |
| rosa_rugosa | Rorug05G0294400 |
| rosa_samantha | Rh5AG363900 Rh5BG375800 Rh5CG398300 Rh5DG389000 |
| rosa_wichuraiana | Rw5G034220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 927, 2109 |
| AarI | CACCTGC | 1 cut(s) | 421 |
| Acc16I | TGCGCA | 1 cut(s) | 3308 |
| Acc36I | ACCTGC | 2 cut(s) | 421, 4273 |
| Acc65I | GGTACC | 2 cut(s) | 1985, 4035 |
| AccB1I | GGYRCC | 4 cut(s) | 1985, 4035, 4588, 4660 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 394, 1495 |
| AccI | GTMKAC | 1 cut(s) | 4704 |
| AccII | CGCG | 2 cut(s) | 1047, 2760 |
| AclWI | GGATC | 4 cut(s) | 1994, 2608, 4136, 4307 |
| AcoI | YGGCCR | 3 cut(s) | 1588, 2303, 4942 |
| AcsI | RAATTY | 7 cut(s) | 1195, 1689, 1961, 2589, 2937, 3173, 4519 |
| AcuI | CTGAAG | 7 cut(s) | 102, 561, 2358, 3029, 3798, 4065, 4098 |
| AcyI | GRCGYC | 1 cut(s) | 4189 |
| AdeI | CACNNNGTG | 2 cut(s) | 1326, 4499 |
| AfeI | AGCGCT | 1 cut(s) | 2625 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 73, 394, 419, 578, 1495, 1748, 3637, 4670 |
| AflIII | ACRYGT | 1 cut(s) | 3769 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2552 |
| AhlI | ACTAGT | 2 cut(s) | 1802, 3677 |
| AjnI | CCWGG | 8 cut(s) | 1145, 1364, 1747, 2231, 3857, 3888, 4480, 4743 |
| AleI | CACNNNNGTG | 2 cut(s) | 811, 4126 |
| Alw21I | GWGCWC | 3 cut(s) | 1385, 1438, 1503 |
| Alw26I | GTCTC | 4 cut(s) | 98, 2209, 3122, 3675 |
| Alw44I | GTGCAC | 1 cut(s) | 1381 |
| AlwI | GGATC | 4 cut(s) | 1994, 2608, 4136, 4307 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 3537, 3821 |
| Ama87I | CYCGRG | 1 cut(s) | 2199 |
| Aor51HI | AGCGCT | 1 cut(s) | 2625 |
| ApaLI | GTGCAC | 1 cut(s) | 1381 |
| ApoI | RAATTY | 7 cut(s) | 1195, 1689, 1961, 2589, 2937, 3173, 4519 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2816, 2848, 4499, 4531 |
| AseI | ATTAAT | 2 cut(s) | 1173, 1389 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 146, 3389 |
| Asp718I | GGTACC | 2 cut(s) | 1985, 4035 |
| AspA2I | CCTAGG | 2 cut(s) | 35, 4403 |
| AspLEI | GCGC | 5 cut(s) | 1047, 1920, 2583, 2626, 3309 |
| AsuC2I | CCSGG | 2 cut(s) | 196, 4398 |
| AvaI | CYCGRG | 1 cut(s) | 2199 |
| AvaII | GGWCC | 8 cut(s) | 64, 77, 871, 905, 1117, 1362, 2546, 2762 |
| AvrII | CCTAGG | 2 cut(s) | 35, 4403 |
| AxyI | CCTNAGG | 2 cut(s) | 2056, 2115 |
| BaeGI | GKGCMC | 2 cut(s) | 1385, 4299 |
| BalI | TGGCCA | 3 cut(s) | 1590, 2305, 4944 |
| BanI | GGYRCC | 4 cut(s) | 1985, 4035, 4588, 4660 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 4818, 4850 |
| BauI | CACGAG | 1 cut(s) | 1321 |
| BbsI | GAAGAC | 4 cut(s) | 1651, 2447, 4221, 4630 |
| Bbv12I | GWGCWC | 3 cut(s) | 1385, 1438, 1503 |
| BceAI | ACGGC | 1 cut(s) | 3862 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 3689, 3723, 3770, 3804 |
| BciT130I | CCWGG | 8 cut(s) | 1147, 1366, 1749, 2233, 3859, 3890, 4482, 4745 |
| BciVI | GTATCC | 2 cut(s) | 1655, 3969 |
| BclI | TGATCA | 1 cut(s) | 4759 |
| BcnI | CCSGG | 2 cut(s) | 196, 4398 |
| BcoDI | GTCTC | 4 cut(s) | 98, 2209, 3122, 3675 |
| BcuI | ACTAGT | 2 cut(s) | 1802, 3677 |
| BfaI | CTAG | 8 cut(s) | 36, 489, 1803, 2537, 2846, 3678, 4185, 4404 |
| BfmI | CTRYAG | 2 cut(s) | 351, 3006 |
| BfoI | RGCGCY | 2 cut(s) | 1921, 2627 |
| BfuAI | ACCTGC | 2 cut(s) | 421, 4273 |
| BfuI | GTATCC | 2 cut(s) | 1655, 3969 |
| BglII | AGATCT | 3 cut(s) | 1021, 3997, 4603 |
| BlnI | CCTAGG | 2 cut(s) | 35, 4403 |
| BlpI | GCTNAGC | 2 cut(s) | 3372, 4392 |
| Bme18I | GGWCC | 8 cut(s) | 64, 77, 871, 905, 1117, 1362, 2546, 2762 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2552 |
| BmeT110I | CYCGRG | 1 cut(s) | 2199 |
| BpiI | GAAGAC | 4 cut(s) | 1651, 2447, 4221, 4630 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3096 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 3372, 4392 |
| BpuEI | CTTGAG | 2 cut(s) | 1487, 2660 |
| BpuMI | CCSGG | 2 cut(s) | 196, 4398 |
| Bsa29I | ATCGAT | 1 cut(s) | 1452 |
| BsaAI | YACGTR | 2 cut(s) | 1943, 2531 |
| BsaBI | GATNNNNATC | 3 cut(s) | 279, 1239, 4311 |
| BsaHI | GRCGYC | 1 cut(s) | 4189 |
| BsaJI | CCNNGG | 9 cut(s) | 35, 2231, 2336, 2920, 3858, 4284, 4397, 4403, 4901 |
| BsaWI | WCCGGW | 3 cut(s) | 10, 66, 1354 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 73, 394, 419, 578, 1495, 1748, 3637, 4670 |
| Bse118I | RCCGGY | 1 cut(s) | 1920 |
| Bse21I | CCTNAGG | 2 cut(s) | 2056, 2115 |
| Bse3DI | GCAATG | 6 cut(s) | 708, 1900, 2258, 2493, 2658, 4823 |
| Bse8I | GATNNNNATC | 3 cut(s) | 279, 1239, 4311 |
| BseBI | CCWGG | 8 cut(s) | 1147, 1366, 1749, 2233, 3859, 3890, 4482, 4745 |
| BseCI | ATCGAT | 1 cut(s) | 1452 |
| BseDI | CCNNGG | 9 cut(s) | 35, 2231, 2336, 2920, 3858, 4284, 4397, 4403, 4901 |
| BseJI | GATNNNNATC | 3 cut(s) | 279, 1239, 4311 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 73, 394, 419, 578, 1495, 1748, 3637, 4670 |
| BseMI | GCAATG | 6 cut(s) | 708, 1900, 2258, 2493, 2658, 4823 |
| BseRI | GAGGAG | 3 cut(s) | 169, 2534, 4435 |
| BseSI | GKGCMC | 2 cut(s) | 1385, 4299 |
| BseYI | CCCAGC | 2 cut(s) | 356, 1989 |
| BsgI | GTGCAG | 1 cut(s) | 3550 |
| Bsh1236I | CGCG | 2 cut(s) | 1047, 2760 |
| BshNI | GGYRCC | 4 cut(s) | 1985, 4035, 4588, 4660 |
| BshVI | ATCGAT | 1 cut(s) | 1452 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1385, 1438, 1503 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2199 |
| BsiSI | CCGG | 7 cut(s) | 11, 67, 195, 1355, 1921, 3910, 4397 |
| BslFI | GGGAC | 2 cut(s) | 3092, 3799 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 73, 394, 419, 578, 1495, 1748, 3637, 4670 |
| BsmAI | GTCTC | 4 cut(s) | 98, 2209, 3122, 3675 |
| BsmFI | GGGAC | 2 cut(s) | 3092, 3799 |
| BsmI | GAATGC | 5 cut(s) | 2794, 3031, 3309, 3523, 3849 |
| BsoBI | CYCGRG | 1 cut(s) | 2199 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1385, 1438, 1503, 4299 |
| Bsp1407I | TGTACA | 2 cut(s) | 201, 2511 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 3372, 4392 |
| Bsp19I | CCATGG | 1 cut(s) | 4284 |
| BspDI | ATCGAT | 1 cut(s) | 1452 |
| BspFNI | CGCG | 2 cut(s) | 1047, 2760 |
| BspHI | TCATGA | 3 cut(s) | 2797, 3553, 4459 |
| BspMAI | CTGCAG | 2 cut(s) | 355, 3010 |
| BspMI | ACCTGC | 2 cut(s) | 421, 4273 |
| BspPI | GGATC | 4 cut(s) | 1994, 2608, 4136, 4307 |
| BspT107I | GGYRCC | 4 cut(s) | 1985, 4035, 4588, 4660 |
| BsrDI | GCAATG | 6 cut(s) | 708, 1900, 2258, 2493, 2658, 4823 |
| BsrFI | RCCGGY | 1 cut(s) | 1920 |
| BsrGI | TGTACA | 2 cut(s) | 201, 2511 |
| BssAI | RCCGGY | 1 cut(s) | 1920 |
| BssECI | CCNNGG | 9 cut(s) | 35, 2231, 2336, 2920, 3858, 4284, 4397, 4403, 4901 |
| BssNI | GRCGYC | 1 cut(s) | 4189 |
| BssSI | CACGAG | 1 cut(s) | 1321 |
| BssT1I | CCWWGG | 6 cut(s) | 35, 2336, 2920, 4284, 4403, 4901 |
| Bst2BI | CACGAG | 1 cut(s) | 1321 |
| Bst2UI | CCWGG | 8 cut(s) | 1147, 1366, 1749, 2233, 3859, 3890, 4482, 4745 |
| Bst6I | CTCTTC | 5 cut(s) | 1155, 1671, 3239, 4323, 4434 |
| BstACI | GRCGYC | 1 cut(s) | 4189 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2162, 3624 |
| BstAUI | TGTACA | 2 cut(s) | 201, 2511 |
| BstBAI | YACGTR | 2 cut(s) | 1943, 2531 |
| BstDSI | CCRYGG | 1 cut(s) | 4284 |
| BstEII | GGTNACC | 1 cut(s) | 4673 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 576 |
| BstFNI | CGCG | 2 cut(s) | 1047, 2760 |
| BstH2I | RGCGCY | 2 cut(s) | 1921, 2627 |
| BstHHI | GCGC | 5 cut(s) | 1047, 1920, 2583, 2626, 3309 |
| BstMAI | GTCTC | 4 cut(s) | 98, 2209, 3122, 3675 |
| BstNI | CCWGG | 8 cut(s) | 1147, 1366, 1749, 2233, 3859, 3890, 4482, 4745 |
| BstNSI | RCATGY | 5 cut(s) | 1045, 2052, 2090, 2094, 3773 |
| BstPI | GGTNACC | 1 cut(s) | 4673 |
| BstSFI | CTRYAG | 2 cut(s) | 351, 3006 |
| BstSLI | GKGCMC | 2 cut(s) | 1385, 4299 |
| BstSNI | TACGTA | 1 cut(s) | 1943 |
| BstUI | CGCG | 2 cut(s) | 1047, 2760 |
| BstV2I | GAAGAC | 4 cut(s) | 1651, 2447, 4221, 4630 |
| BstX2I | RGATCY | 3 cut(s) | 1021, 3997, 4603 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 4685, 4871 |
| BstYI | RGATCY | 3 cut(s) | 1021, 3997, 4603 |
| Bsu15I | ATCGAT | 1 cut(s) | 1452 |
| Bsu36I | CCTNAGG | 2 cut(s) | 2056, 2115 |
| BsuI | GTATCC | 2 cut(s) | 1655, 3969 |
| BsuTUI | ATCGAT | 1 cut(s) | 1452 |
| BtgI | CCRYGG | 1 cut(s) | 4284 |
| BtgZI | GCGATG | 1 cut(s) | 1014 |
| BtsI | GCAGTG | 3 cut(s) | 3419, 3538, 3629 |
| BveI | ACCTGC | 2 cut(s) | 421, 4273 |
| CaiI | CAGNNNCTG | 2 cut(s) | 3537, 3821 |
| CciI | TCATGA | 3 cut(s) | 2797, 3553, 4459 |
| CfoI | GCGC | 5 cut(s) | 1047, 1920, 2583, 2626, 3309 |
| Cfr10I | RCCGGY | 1 cut(s) | 1920 |
| ClaI | ATCGAT | 1 cut(s) | 1452 |
| CseI | GACGC | 2 cut(s) | 4168, 4178 |
| DraIII | CACNNNGTG | 2 cut(s) | 1326, 4499 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2552 |
| EaeI | YGGCCR | 3 cut(s) | 1588, 2303, 4942 |
| Eam1104I | CTCTTC | 5 cut(s) | 1155, 1671, 3239, 4323, 4434 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2552 |
| EarI | CTCTTC | 5 cut(s) | 1155, 1671, 3239, 4323, 4434 |
| Eco105I | TACGTA | 1 cut(s) | 1943 |
| Eco130I | CCWWGG | 6 cut(s) | 35, 2336, 2920, 4284, 4403, 4901 |
| Eco147I | AGGCCT | 1 cut(s) | 3742 |
| Eco47I | GGWCC | 8 cut(s) | 64, 77, 871, 905, 1117, 1362, 2546, 2762 |
| Eco47III | AGCGCT | 1 cut(s) | 2625 |
| Eco57I | CTGAAG | 7 cut(s) | 102, 561, 2358, 3029, 3798, 4065, 4098 |
| Eco81I | CCTNAGG | 2 cut(s) | 2056, 2115 |
| Eco88I | CYCGRG | 1 cut(s) | 2199 |
| Eco91I | GGTNACC | 1 cut(s) | 4673 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 576 |
| EcoO109I | RGGNCCY | 5 cut(s) | 77, 905, 1362, 4400, 4754 |
| EcoO65I | GGTNACC | 1 cut(s) | 4673 |
| EcoRI | GAATTC | 1 cut(s) | 1961 |
| EcoRII | CCWGG | 8 cut(s) | 1145, 1364, 1747, 2231, 3857, 3888, 4480, 4743 |
| EcoT14I | CCWWGG | 6 cut(s) | 35, 2336, 2920, 4284, 4403, 4901 |
| EcoT22I | ATGCAT | 2 cut(s) | 2092, 2096 |
| ErhI | CCWWGG | 6 cut(s) | 35, 2336, 2920, 4284, 4403, 4901 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1860, 1892, 2716, 2748 |
| FaqI | GGGAC | 2 cut(s) | 3092, 3799 |
| FauI | CCCGC | 2 cut(s) | 756, 3434 |
| FauNDI | CATATG | 2 cut(s) | 2503, 3981 |
| FbaI | TGATCA | 1 cut(s) | 4759 |
| FblI | GTMKAC | 1 cut(s) | 4704 |
| FspBI | CTAG | 8 cut(s) | 36, 489, 1803, 2537, 2846, 3678, 4185, 4404 |
| FspI | TGCGCA | 1 cut(s) | 3308 |
| GlaI | GCGC | 5 cut(s) | 1046, 1919, 2582, 2625, 3308 |
| GsaI | CCCAGC | 2 cut(s) | 360, 1993 |
| HaeII | RGCGCY | 2 cut(s) | 1921, 2627 |
| HapII | CCGG | 7 cut(s) | 11, 67, 195, 1355, 1921, 3910, 4397 |
| HgaI | GACGC | 2 cut(s) | 4168, 4178 |
| HhaI | GCGC | 5 cut(s) | 1047, 1920, 2583, 2626, 3309 |
| Hin1I | GRCGYC | 1 cut(s) | 4189 |
| Hin6I | GCGC | 5 cut(s) | 1045, 1918, 2581, 2624, 3307 |
| HinP1I | GCGC | 5 cut(s) | 1045, 1918, 2581, 2624, 3307 |
| HincII | GTYRAC | 2 cut(s) | 1873, 3497 |
| HindII | GTYRAC | 2 cut(s) | 1873, 3497 |
| HindIII | AAGCTT | 4 cut(s) | 2321, 2684, 2864, 3135 |
| HpaII | CCGG | 7 cut(s) | 11, 67, 195, 1355, 1921, 3910, 4397 |
| Hpy166II | GTNNAC | 9 cut(s) | 865, 1383, 1873, 1907, 2528, 3497, 4180, 4705, 4832 |
| Hpy8I | GTNNAC | 9 cut(s) | 865, 1383, 1873, 1907, 2528, 3497, 4180, 4705, 4832 |
| HpyCH4IV | ACGT | 3 cut(s) | 1942, 2293, 2530 |
| HpySE526I | ACGT | 3 cut(s) | 1942, 2293, 2530 |
| Hsp92I | GRCGYC | 1 cut(s) | 4189 |
| HspAI | GCGC | 5 cut(s) | 1045, 1918, 2581, 2624, 3307 |
| KpnI | GGTACC | 2 cut(s) | 1989, 4039 |
| KroI | GCCGGC | 1 cut(s) | 1920 |
| KroNI | GCCGGC | 1 cut(s) | 1922 |
| Ksp22I | TGATCA | 1 cut(s) | 4759 |
| LmnI | GCTCC | 4 cut(s) | 718, 1433, 1780, 1915 |
| MaeI | CTAG | 8 cut(s) | 36, 489, 1803, 2537, 2846, 3678, 4185, 4404 |
| MaeII | ACGT | 3 cut(s) | 1942, 2293, 2530 |
| MflI | RGATCY | 3 cut(s) | 1021, 3997, 4603 |
| MhlI | GDGCHC | 4 cut(s) | 1385, 1438, 1503, 4299 |
| MlsI | TGGCCA | 3 cut(s) | 1590, 2305, 4944 |
| MluNI | TGGCCA | 3 cut(s) | 1590, 2305, 4944 |
| MlyI | GAGTC | 6 cut(s) | 2211, 3677, 3781, 3812, 4073, 4211 |
| MmeI | TCCRAC | 9 cut(s) | 342, 708, 1042, 2753, 2909, 3698, 4088, 4189, 4528 |
| Mox20I | TGGCCA | 3 cut(s) | 1590, 2305, 4944 |
| Mph1103I | ATGCAT | 2 cut(s) | 2092, 2096 |
| MroNI | GCCGGC | 1 cut(s) | 1920 |
| MroXI | GAANNNNTTC | 2 cut(s) | 146, 3389 |
| MscI | TGGCCA | 3 cut(s) | 1590, 2305, 4944 |
| MslI | CAYNNNNRTG | 3 cut(s) | 590, 811, 4126 |
| Msp20I | TGGCCA | 3 cut(s) | 1590, 2305, 4944 |
| MspA1I | CMGCKG | 3 cut(s) | 356, 1993, 3371 |
| MspI | CCGG | 7 cut(s) | 11, 67, 195, 1355, 1921, 3910, 4397 |
| Mva1269I | GAATGC | 5 cut(s) | 2794, 3031, 3309, 3523, 3849 |
| MvaI | CCWGG | 8 cut(s) | 1147, 1366, 1749, 2233, 3859, 3890, 4482, 4745 |
| MvnI | CGCG | 2 cut(s) | 1047, 2760 |
| NaeI | GCCGGC | 1 cut(s) | 1922 |
| NciI | CCSGG | 2 cut(s) | 196, 4398 |
| NcoI | CCATGG | 1 cut(s) | 4284 |
| NdeI | CATATG | 2 cut(s) | 2503, 3981 |
| NgoMIV | GCCGGC | 1 cut(s) | 1920 |
| NmuCI | GTSAC | 9 cut(s) | 373, 1084, 1734, 1798, 2075, 3065, 3724, 3842, 4673 |
| NsbI | TGCGCA | 1 cut(s) | 3308 |
| NsiI | ATGCAT | 2 cut(s) | 2092, 2096 |
| NspI | RCATGY | 5 cut(s) | 1045, 2052, 2090, 2094, 3773 |
| OliI | CACNNNNGTG | 2 cut(s) | 811, 4126 |
| PaeI | GCATGC | 2 cut(s) | 2090, 2094 |
| PaeR7I | CTCGAG | 1 cut(s) | 2199 |
| PagI | TCATGA | 3 cut(s) | 2797, 3553, 4459 |
| PaqCI | CACCTGC | 1 cut(s) | 421 |
| PceI | AGGCCT | 1 cut(s) | 3742 |
| PciI | ACATGT | 1 cut(s) | 3769 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 222, 1458 |
| PctI | GAATGC | 5 cut(s) | 2794, 3031, 3309, 3523, 3849 |
| PdiI | GCCGGC | 1 cut(s) | 1922 |
| PdmI | GAANNNNTTC | 2 cut(s) | 146, 3389 |
| PflFI | GACNNNGTC | 1 cut(s) | 109 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 394, 1495 |
| PfoI | TCCNGGA | 2 cut(s) | 4480, 4743 |
| PleI | GAGTC | 6 cut(s) | 2210, 3676, 3781, 3812, 4072, 4211 |
| PpsI | GAGTC | 6 cut(s) | 2210, 3676, 3781, 3812, 4072, 4211 |
| Ppu21I | YACGTR | 2 cut(s) | 1943, 2531 |
| PpuMI | RGGWCCY | 3 cut(s) | 77, 905, 1362 |
| PscI | ACATGT | 1 cut(s) | 3769 |
| PshBI | ATTAAT | 2 cut(s) | 1173, 1389 |
| PsiI | TTATAA | 2 cut(s) | 927, 2109 |
| Psp5II | RGGWCCY | 3 cut(s) | 77, 905, 1362 |
| Psp6I | CCWGG | 8 cut(s) | 1145, 1364, 1747, 2231, 3857, 3888, 4480, 4743 |
| PspEI | GGTNACC | 1 cut(s) | 4673 |
| PspFI | CCCAGC | 2 cut(s) | 356, 1989 |
| PspGI | CCWGG | 8 cut(s) | 1145, 1364, 1747, 2231, 3857, 3888, 4480, 4743 |
| PspPPI | RGGWCCY | 3 cut(s) | 77, 905, 1362 |
| PspXI | VCTCGAGB | 1 cut(s) | 2199 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3556, 3588 |
| PstI | CTGCAG | 2 cut(s) | 355, 3010 |
| PstNI | CAGNNNCTG | 2 cut(s) | 3537, 3821 |
| PsuI | RGATCY | 3 cut(s) | 1021, 3997, 4603 |
| PsyI | GACNNNGTC | 1 cut(s) | 109 |
| PvuII | CAGCTG | 3 cut(s) | 356, 1993, 3371 |
| RseI | CAYNNNNRTG | 3 cut(s) | 590, 811, 4126 |
| SchI | GAGTC | 6 cut(s) | 2211, 3677, 3781, 3812, 4073, 4211 |
| SduI | GDGCHC | 4 cut(s) | 1385, 1438, 1503, 4299 |
| SfcI | CTRYAG | 2 cut(s) | 351, 3006 |
| Sfr274I | CTCGAG | 1 cut(s) | 2199 |
| SinI | GGWCC | 8 cut(s) | 64, 77, 871, 905, 1117, 1362, 2546, 2762 |
| SlaI | CTCGAG | 1 cut(s) | 2199 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 590, 811, 4126 |
| SmlI | CTYRAG | 3 cut(s) | 1502, 2199, 2639 |
| SmoI | CTYRAG | 3 cut(s) | 1502, 2199, 2639 |
| SnaBI | TACGTA | 1 cut(s) | 1943 |
| SpeI | ACTAGT | 2 cut(s) | 1802, 3677 |
| SphI | GCATGC | 2 cut(s) | 2090, 2094 |
| SseBI | AGGCCT | 1 cut(s) | 3742 |
| SspI | AATATT | 4 cut(s) | 1443, 1637, 2485, 4278 |
| SspMI | CTAG | 8 cut(s) | 36, 489, 1803, 2537, 2846, 3678, 4185, 4404 |
| StuI | AGGCCT | 1 cut(s) | 3742 |
| StyI | CCWWGG | 6 cut(s) | 35, 2336, 2920, 4284, 4403, 4901 |
| TaiI | ACGT | 3 cut(s) | 1945, 2296, 2533 |
| TaqI | TCGA | 6 cut(s) | 113, 497, 1452, 2200, 3709, 4341 |
| TatI | WGTACW | 4 cut(s) | 201, 1904, 2045, 2511 |
| TauI | GCSGC | 1 cut(s) | 571 |
| TseFI | GTSAC | 9 cut(s) | 373, 1084, 1734, 1798, 2075, 3065, 3724, 3842, 4673 |
| Tsp45I | GTSAC | 9 cut(s) | 373, 1084, 1734, 1798, 2075, 3065, 3724, 3842, 4673 |
| TspGWI | ACGGA | 2 cut(s) | 613, 1414 |
| Tth111I | GACNNNGTC | 1 cut(s) | 109 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 394, 1495 |
| VneI | GTGCAC | 1 cut(s) | 1381 |
| VpaK11BI | GGWCC | 8 cut(s) | 64, 77, 871, 905, 1117, 1362, 2546, 2762 |
| VspI | ATTAAT | 2 cut(s) | 1173, 1389 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 576 |
| XapI | RAATTY | 7 cut(s) | 1195, 1689, 1961, 2589, 2937, 3173, 4519 |
| XceI | RCATGY | 5 cut(s) | 1045, 2052, 2090, 2094, 3773 |
| XhoI | CTCGAG | 1 cut(s) | 2199 |
| XmaJI | CCTAGG | 2 cut(s) | 35, 4403 |
| XmiI | GTMKAC | 1 cut(s) | 4704 |
| XmnI | GAANNNNTTC | 2 cut(s) | 146, 3389 |
| XspI | CTAG | 8 cut(s) | 36, 489, 1803, 2537, 2846, 3678, 4185, 4404 |
| Zsp2I | ATGCAT | 2 cut(s) | 2092, 2096 |