MD11G1155100.v1.1

WSTF, HB1, Itc1p, MBD9 motif 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0007748
Physical Location & Seq
Reverse (-)
14878361 .. 14886608
8248 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1155100.v1.1.491

Sequence Viewer

Length: 4965 bp
ATGGACAATCCGGTAGTTAAAAAAAGGGGTCGCCCTAGGAAGCATAAAGCGGAGGATGAAAAGGACCGGAAATCGGGTCCTGAAGCTAAGAAACGGGTTGTTGAGACAAGGTCGATTGTGTTGGTGGGTAGATATGTGTTGAAAGACTTCGGGAGGAGTGGGATTTTTCTTGGGAAAGTTGTGTATTACGATGCCGGGTTGTACAGAGTTAATTACGAAGATGGCGATTGCGAGGACTTGGAGAGTGGCGAGATTCGTGGCATCCTTGTTCGTGATGATGATCTTGACACTGGTTTGAGCGTTAGGAGGAAGAAGTTAGATGATTTGGTGTCGAAATTGAGTAGGCAAACTGCAGCTGGGTTGGATAAGAATGTGACAAAATCAGCCCATGAGGTGGATAGGATTGATTCACCTGCATTCGGTGAGTTGGGTGGTGGAGTAAAGATCGAAAGTGATGAGATTCAAATTGAAGGTGGTGATGATTCGTCTAGTGATTCGAGTGAGTATGCAAGGGATAAGGATATGGGTTTTGGTGATGAGCCACCGTCTGTCCCACCGCCACAGTTGCCGCCTTCTTCAGGAACCATAGGTGTGCCAGAGCAATATGTTTCACATCTTTTCTCCGTGTATGGTTTCTTGCGATCATTTAGCATCTCCCTGTTCTTGAACCCATTTACATTGGATGATTTTGTGGGGTCGCTTAATTGCCGTGCTCCAAACACATTGTTGGATGCAATTCATGTTGCTTTGCTGCGTGCCTTGAGGGGTCATCTTGAAACACTCTCATCTGATGGCTCAGAGGTAGCACAAAAATGTTTGAGGTGCATTGATTGGAACTTGATTGATACATTGACTTGGCCTGTTTACTTGGTCCAGTATTTGACAATTATGGGATATGCAAAAGGACCAGAGTGGAAAGGCTTTTATAATGAGGTTTTGGACAAGGAGTATTATCTATTATCAGTTGGTAGAAAGTTAATTAATTTGCAAATCCTTTGCGATGATGTCTTAGATGCTAAAGATCTGAGAGATGAATTAGACATGCGTGAAGAATCAGAAGTCGGAATAGATTGTGATGCAGAAGTGACTAATCCTCTTGTAAGTGGGCCAAGAAGGGTCCATCCGAGATGTTCCAAAACTTCTGCCTGGAAGGACAGAGAAGAGGTGGAAATTAATCGGCCATCTGGTAATGCAAATTCATTTAGTTCCAAAGGTGTGAAAGAGGACGTGGATGATGTAGATCGTAACTCTGATGAATGTCGGCTTTGTGGCATGGATGGAACTTTGCTTTGCTGTGATGGGTGTCCTTCTGCTTATCACACGAGGTGTATAGGTGTTATGAAATTGTCTATACCGGAAGGGTCCTGGTATTGTCCTGAGTGCACAATTAATAAGATTGGGCCAACAATTACGATGGGAACATCCGTTAAAGGAGCACAAATATTTGGCATCGATTCCTACGAGCACATCTTCATGGGTACTTGCAACCACTTACTGGTGCTCAAGGCGACTATCAACACAGAACCATGTATTAGATATTACAATCGGAATGACATTCCAAAAGCCCTTAAAGTTTTACATTCATCTGGCCAACATACAGCTTTATACTCAGAGGTCTGCAAGGCAATTTTACAATATTGGAGTATCCCAGAAAGTGTCTTCTCTCTTCCACAAGTGACTGAAACAGAAATTCCATTGGAAAATACAAAGGAAGGTGCAAAATCTTCTATGCAGTCACTTCCTTTGCCTGGAAAGGAAAATCATACAGTTACAACTCCAATTAAGGCTGAGAATCACGTGACTAGTGTAAGTGAAACCAACTTAGGTTACATGGCAGCTTCATCTCTCAATGTCTCTGATAAGATTCAAGTTGACCTTCCTAATTCTCAGAGCAATGGGGTCAGTACACCACAGGAGCGCCGGCCTTTGATTATCAAGATACGTACAAGGCAGAAAATGGAATTCTCTTTACCAACTGCTACTGGTAGCCAGCTGGCTGATCCATCTCATCTGACCCACCAAAGCTCAGTTGCAATACCTCGTAGTACATGCACCTCAGGGAACATCAACAATTGTCACAATGAGCATGCATGCATGGGGGCTTTTTATAAACCTCAGGCATACATAAATTACTATATGCACGGGGAGTTTGCTGCATCTGCTGCTTCCAAACTTGCTGCAATATCATCAGAAGAAACTCGGGTCTCAGATAGTCATGCTTTAGGCAATCCCAGGAAAGCTGCATCTGCAAACATTTCATTGCAAACAAAAGCCTTCTCATTAACAGCCTCACGTTTCTTTTGGCCAAGTTCTGAAAAGAAGCTTGTGGAGGTTCCAAGGGAGAGATGTGGTTGGTGTCTTTCTTGTAAGGCTTCAGTTTCAAGCAAGAGAGGATGTATGCTAAATCATGCTGCTTTGAGTGCCACCAAAGGTACTATGAAGACCCTTGCCAGCCTGGGTCCTATAAAGAATGGGGAGGGGAATATTGTAAGCATTGCAACATATGTATTGTACATGGAGGAGAGTTTACGTGGCCTAGTAACTGGACCATTTGTCAATGAAAATTATAGAAACCAGTGGCGCAAACAAATTTATCAAGGATCAACTTTCAGTGCAATAAAAGCTCTATTGCTTGAACTTGAGGCAAATATACGAACCATTGCTCTGTCTGGGGAGTGGATAAAGCTTGTGGATGATTGGTTGGTTGATTCTTCCATGATTCAAAGTCCAACTTGCTCTGTTGGTACAACACAAAAACACGGACCAAACAGGAGGGGCAGGAAGCAGAATGCAATTCATGATGATAAAGATGATGATTGCCATGACCAGAGTTTCGTCTGGTGGCAAGGTGGGAAGCTATCAAAGCTTATATTTCAGAGAGCAATTTTATCTCGTTCTTTGGTTAAAAAAGCAGCTCGCCAAGGTGGTTGGAAGAAAATTTCTGGTATATCTTATGCTGATGGTTCTGAGATTCCGAAAAGAAGCAGACAATCAGTATGGAGGACTGCAGTTGAAATGAGTAAGAATGCATCACAGCTTGCGCTTCAGGTCAGATATTTGGATTGTCACCTGAGATGGAGTGATCTTGTTCGTCCTGAGCAGAACCTCCCTGATGGGAAGGGTGTGGAGACAGAAGCTTCTGTTTTTAGAAATGCAAATATATGTGATAAAAAATTTGTGAAGAACAGTAGCATATATGGGGTTGATTTCGGTGGTCAAAAGCATCTGCCTAACCGTGTAATGAAGAGTATCATTGAAACAGAGGAAAGTCAAGATGGATATAACAAGTTTTGGTTTCCTGAACTGCGCATTCCTTTATATTTGATTAAAGAATATGAAGAAAGGTTGGGCAAAGCTCTTTTGCCATCAGCTGAGCAGCCTTTGAATATGTTCCGCAAGTTACAGAAACAGCAGTGGAAGGTTCCCCGCAGGGATATATTTTTTTATCTTGTGTGTAAGAGAGATAATCTGGACTTGTGTTCCTGCTCTTCATGTCAACTGAATGTTTTAATGCGGAATGCGGTCAAGTGCTGTGCCTGTCAAGGTTATTGTCATGAGGACTGTACCATAAGTTCAACAGTTTCTACGAAAGAAGAAGTTGAGTTTTTGATCACTTGCAAGCAGTGCTACCATGCAAGGGCTCTCATTAAAAATGAAAACTTGAAGGAGTCTCCAACTAGTCCTTTGCACTTGCAAATGCAGGAATATCGAACTCCCATAACAGTCACCAGTGTTGCAAGGCCTAAAAACTACAATCAACCAGTAACACATGTCAGAGGGCAGGGGACTCGTTCTGAGAAGAAACAGGCAACTTCAGACTCTGCTTTGGCAGCAAAAAATCGTCACGGCATTCGTTCTTGGGGTATTATATGGAAGAAGAAGGGGGGCCCTGAAACTGACACTGATTTCCGGCTTAATAATATACTTCTTGCGGATGGTTCAGAAGTGCATGGGTTGTATCCTGTTTGTCACCTGTGCCATATGGCATATCAGTCAGATCTGATGTATATATGCTGCGAAACTTGCAAAAATTGGTACCATGCTGAAGCTGTTGAGCTTGACGAGGCAAAGATTTCTGAAGTGGCTGGTTTCAAGTGTTGCAAGTGTCGGAGGATAAAATCACCTGTGTGTCCTTACACTGATCCTACAAACATAAAGACGCAAGAGAACAAGAAGGTTCACACTAGGCGTCCAAAGCAAGAAACAGTTGGAGAAGACTCTGATTCTGCAACCATTTCCATATCTGATTCTAAAGTCTGCGAACCGGCTACTCCAATATTTCCCATGGAGGAAGTGCCCATGCAGGATGGTGATCCTCTTCTCTTTTCTCTCGCTAAAGTCGAGTTAGTTACAGATTACGATTCGGAAGTTAATGCTCAATGGAATACTGCTGAGCCAGGGCCTAGGAAATTACCAGTGAGGAGGGGTATTAAGCGTGAAGAGGATGTAGATGCCTTTCATGAGAGTAACATATCTCATCCTGGAATATCTACACATGGTGAAACGAATTACCTGTCAAATTCTATGGACTTTGATCCATCCCATGTTGGATGGGATAACTCCATGAATGGAGTTGAAGGTGAGATGGTGCATGACTATGAAGATCTAAACTACGAGAATATGGAACCGCAAACTGTCTTCACTATCAATGAGTTGCTGGCACCTGATGATGGTGACCAGTTTGATGGATTCCAAGCACTTGTAGACGAATCTGGAAATCTGGAAAACCAATATACAGTTTTCCAGGATGGAGGCCTTGATCAATATAACATGGCTACTTTCAGTGATGAAGTAAAATCTGCAGTTGAGATGATGCAATGTCAGGTATGTTCACTTCAAGAACCATCACCCAATCTTTCCTGCCAGAACTGTGGGCTATTGATACACAGTGAGTGTTCTCCTTGGATTGAATCATCATCGGCGAATGGAAGCTGGAAGTGTGGCCAGTGCAGAGAGTGGCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009941 GO:0009987 GO:0010019 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016589 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019867 GO:0023052 GO:0031010 GO:0031090 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031967 GO:0031968 GO:0031969 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0035064 GO:0042170 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051716 GO:0060255 GO:0060322 GO:0065007 GO:0070013 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0098588 GO:0098805 GO:0140030 GO:0140034 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1904949 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT PHD WHIM1

Protein Analysis

1655

Amino Acids

184.91

Weight (kDa)

6.03

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTM_DIR17_Tudor PF21743 43 - 89 1.6e-14 PTM/DIR17-like, Tudor domain
DDT PF02791 202 - 255 5.2e-18 DDT domain
WHIM1 PF15612 303 - 347 5.5e-06 WSTF, HB1, Itc1p, MBD9 motif 1
PHD PF00628 420 - 461 5.6e-08 PHD-finger
Chromo_PTM PF24294 1046 - 1118 3e-31 Membrane-bound transcription factor PTM, chromo domain-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 927, 2109
AarI CACCTGC 1 cut(s) 421
Acc16I TGCGCA 1 cut(s) 3308
Acc36I ACCTGC 1 cut(s) 421
Acc65I GGTACC 1 cut(s) 4035
AccB1I GGYRCC 2 cut(s) 4035, 4660
AccB7I CCANNNNNTGG 2 cut(s) 394, 1495
AccI GTMKAC 1 cut(s) 4704
AclWI GGATC 5 cut(s) 1994, 2608, 4136, 4307, 4529
AcoI YGGCCR 4 cut(s) 1178, 1588, 2303, 4942
AcsI RAATTY 7 cut(s) 1195, 1689, 1961, 2589, 2937, 3173, 4519
AcuI CTGAAG 7 cut(s) 102, 561, 2358, 3029, 3798, 4065, 4098
AcvI CACGTG 1 cut(s) 1798
AcyI GRCGYC 1 cut(s) 4189
AdeI CACNNNGTG 2 cut(s) 1326, 4499
AfiI CCNNNNNNNGG 8 cut(s) 73, 394, 419, 578, 1495, 1748, 3637, 4670
AflIII ACRYGT 1 cut(s) 3769
AhdI GACNNNNNGTC 1 cut(s) 2552
AhlI ACTAGT 2 cut(s) 1802, 3677
AjiI CACGTC 1 cut(s) 1228
AjnI CCWGG 8 cut(s) 1145, 1364, 1747, 2231, 2454, 4396, 4480, 4743
AleI CACNNNNGTG 1 cut(s) 4126
Alw21I GWGCWC 5 cut(s) 715, 1385, 1438, 1467, 1503
Alw26I GTCTC 5 cut(s) 98, 1858, 2209, 3122, 3675
Alw44I GTGCAC 1 cut(s) 1381
AlwI GGATC 5 cut(s) 1994, 2608, 4136, 4307, 4529
AlwNI CAGNNNCTG 1 cut(s) 3821
Ama87I CYCGRG 1 cut(s) 2199
ApaI GGGCCC 1 cut(s) 3890
ApaLI GTGCAC 1 cut(s) 1381
ApoI RAATTY 7 cut(s) 1195, 1689, 1961, 2589, 2937, 3173, 4519
ArsI GACNNNNNNTTYG 4 cut(s) 2816, 2848, 4499, 4531
AseI ATTAAT 3 cut(s) 981, 1173, 1389
Asp700I GAANNNNTTC 2 cut(s) 146, 3389
Asp718I GGTACC 1 cut(s) 4035
AspA2I CCTAGG 2 cut(s) 35, 4403
AspLEI GCGC 4 cut(s) 1920, 2583, 3043, 3309
AsuC2I CCSGG 1 cut(s) 196
AvaI CYCGRG 1 cut(s) 2199
AvaII GGWCC 9 cut(s) 64, 77, 871, 905, 1117, 1362, 2459, 2546, 2762
AvrII CCTAGG 2 cut(s) 35, 4403
AxyI CCTNAGG 2 cut(s) 2056, 2115
BaeGI GKGCMC 3 cut(s) 1385, 3890, 4299
BalI TGGCCA 3 cut(s) 1590, 2305, 4944
BanI GGYRCC 2 cut(s) 4035, 4660
BanII GRGCYC 2 cut(s) 3643, 3890
BarI GAAGNNNNNNTAC 2 cut(s) 4818, 4850
BauI CACGAG 1 cut(s) 1321
BbrPI CACGTG 1 cut(s) 1798
BbsI GAAGAC 4 cut(s) 1651, 2447, 4221, 4630
Bbv12I GWGCWC 5 cut(s) 715, 1385, 1438, 1467, 1503
BceAI ACGGC 2 cut(s) 693, 3862
BcgI CGANNNNNNTGC 4 cut(s) 3689, 3723, 3770, 3804
BciT130I CCWGG 8 cut(s) 1147, 1366, 1749, 2233, 2456, 4398, 4482, 4745
BciVI GTATCC 2 cut(s) 1655, 3969
BclI TGATCA 2 cut(s) 3609, 4759
BcnI CCSGG 1 cut(s) 196
BcoDI GTCTC 5 cut(s) 98, 1858, 2209, 3122, 3675
BcuI ACTAGT 2 cut(s) 1802, 3677
BfaI CTAG 7 cut(s) 36, 489, 1803, 2537, 3678, 4185, 4404
BfmI CTRYAG 3 cut(s) 351, 3006, 4800
BfoI RGCGCY 1 cut(s) 1921
BfuAI ACCTGC 1 cut(s) 421
BfuI GTATCC 2 cut(s) 1655, 3969
BglII AGATCT 3 cut(s) 1021, 3997, 4603
BlnI CCTAGG 2 cut(s) 35, 4403
BlpI GCTNAGC 2 cut(s) 3372, 4392
Bme1390I CCNGG 9 cut(s) 196, 1147, 1366, 1749, 2233, 2456, 4398, 4482, 4745
Bme18I GGWCC 9 cut(s) 64, 77, 871, 905, 1117, 1362, 2459, 2546, 2762
BmeRI GACNNNNNGTC 1 cut(s) 2552
BmeT110I CYCGRG 1 cut(s) 2199
BmgBI CACGTC 1 cut(s) 1228
BmrFI CCNGG 9 cut(s) 196, 1147, 1366, 1749, 2233, 2456, 4398, 4482, 4745
BpiI GAAGAC 4 cut(s) 1651, 2447, 4221, 4630
Bpu10I CCTNAGC 1 cut(s) 3096
Bpu1102I GCTNAGC 2 cut(s) 3372, 4392
BpuEI CTTGAG 3 cut(s) 781, 1487, 2660
BpuMI CCSGG 1 cut(s) 196
Bsa29I ATCGAT 1 cut(s) 1452
BsaAI YACGTR 3 cut(s) 1798, 1943, 2531
BsaBI GATNNNNATC 3 cut(s) 279, 1239, 4311
BsaHI GRCGYC 1 cut(s) 4189
BsaI GGTCTC 1 cut(s) 2209
BsaJI CCNNGG 9 cut(s) 35, 2231, 2336, 2455, 2920, 4284, 4397, 4403, 4901
BsaWI WCCGGW 3 cut(s) 10, 66, 1354
Bsc4I CCNNNNNNNGG 8 cut(s) 73, 394, 419, 578, 1495, 1748, 3637, 4670
Bse118I RCCGGY 2 cut(s) 1920, 4264
Bse21I CCTNAGG 2 cut(s) 2056, 2115
Bse3DI GCAATG 5 cut(s) 1900, 2258, 2493, 2658, 4823
Bse8I GATNNNNATC 3 cut(s) 279, 1239, 4311
BseBI CCWGG 8 cut(s) 1147, 1366, 1749, 2233, 2456, 4398, 4482, 4745
BseCI ATCGAT 1 cut(s) 1452
BseDI CCNNGG 9 cut(s) 35, 2231, 2336, 2455, 2920, 4284, 4397, 4403, 4901
BseJI GATNNNNATC 3 cut(s) 279, 1239, 4311
BseLI CCNNNNNNNGG 8 cut(s) 73, 394, 419, 578, 1495, 1748, 3637, 4670
BseMI GCAATG 5 cut(s) 1900, 2258, 2493, 2658, 4823
BseRI GAGGAG 3 cut(s) 169, 2534, 4435
BseSI GKGCMC 3 cut(s) 1385, 3890, 4299
BseYI CCCAGC 1 cut(s) 356
BshNI GGYRCC 2 cut(s) 4035, 4660
BshVI ATCGAT 1 cut(s) 1452
BsiHKAI GWGCWC 5 cut(s) 715, 1385, 1438, 1467, 1503
BsiHKCI CYCGRG 1 cut(s) 2199
BsiSI CCGG 7 cut(s) 11, 67, 195, 1355, 1921, 3910, 4265
BslFI GGGAC 2 cut(s) 536, 3799
BslI CCNNNNNNNGG 8 cut(s) 73, 394, 419, 578, 1495, 1748, 3637, 4670
BsmAI GTCTC 5 cut(s) 98, 1858, 2209, 3122, 3675
BsmFI GGGAC 2 cut(s) 536, 3799
BsmI GAATGC 6 cut(s) 416, 2794, 3031, 3309, 3523, 3849
Bso31I GGTCTC 1 cut(s) 2209
BsoBI CYCGRG 1 cut(s) 2199
Bsp120I GGGCCC 1 cut(s) 3886
Bsp1286I GDGCHC 8 cut(s) 715, 1385, 1438, 1467, 1503, 3643, 3890, 4299
Bsp1407I TGTACA 2 cut(s) 201, 2511
Bsp1720I GCTNAGC 2 cut(s) 3372, 4392
Bsp19I CCATGG 1 cut(s) 4284
BspDI ATCGAT 1 cut(s) 1452
BspHI TCATGA 3 cut(s) 2797, 3553, 4459
BspMAI CTGCAG 3 cut(s) 355, 3010, 4804
BspMI ACCTGC 1 cut(s) 421
BspPI GGATC 5 cut(s) 1994, 2608, 4136, 4307, 4529
BspQI GCTCTTC 1 cut(s) 3493
BspT107I GGYRCC 2 cut(s) 4035, 4660
BspTNI GGTCTC 1 cut(s) 2209
BsrDI GCAATG 5 cut(s) 1900, 2258, 2493, 2658, 4823
BsrFI RCCGGY 2 cut(s) 1920, 4264
BsrGI TGTACA 2 cut(s) 201, 2511
BssAI RCCGGY 2 cut(s) 1920, 4264
BssECI CCNNGG 9 cut(s) 35, 2231, 2336, 2455, 2920, 4284, 4397, 4403, 4901
BssNI GRCGYC 1 cut(s) 4189
BssSI CACGAG 1 cut(s) 1321
BssT1I CCWWGG 6 cut(s) 35, 2336, 2920, 4284, 4403, 4901
Bst2BI CACGAG 1 cut(s) 1321
Bst2UI CCWGG 8 cut(s) 1147, 1366, 1749, 2233, 2456, 4398, 4482, 4745
Bst6I CTCTTC 6 cut(s) 1155, 1671, 3239, 3493, 4323, 4434
BstACI GRCGYC 1 cut(s) 4189
BstAPI GCANNNNNTGC 2 cut(s) 2162, 3624
BstAUI TGTACA 2 cut(s) 201, 2511
BstBAI YACGTR 3 cut(s) 1798, 1943, 2531
BstDSI CCRYGG 1 cut(s) 4284
BstEII GGTNACC 1 cut(s) 4673
BstENI CCTNNNNNAGG 1 cut(s) 576
BstH2I RGCGCY 1 cut(s) 1921
BstHHI GCGC 4 cut(s) 1920, 2583, 3043, 3309
BstMAI GTCTC 5 cut(s) 98, 1858, 2209, 3122, 3675
BstNI CCWGG 8 cut(s) 1147, 1366, 1749, 2233, 2456, 4398, 4482, 4745
BstNSI RCATGY 5 cut(s) 1045, 2052, 2090, 2094, 3773
BstPI GGTNACC 1 cut(s) 4673
BstSCI CCNGG 9 cut(s) 194, 1145, 1364, 1747, 2231, 2454, 4396, 4480, 4743
BstSFI CTRYAG 3 cut(s) 351, 3006, 4800
BstSLI GKGCMC 3 cut(s) 1385, 3890, 4299
BstSNI TACGTA 1 cut(s) 1943
BstV2I GAAGAC 4 cut(s) 1651, 2447, 4221, 4630
BstX2I RGATCY 3 cut(s) 1021, 3997, 4603
BstXI CCANNNNNNTGG 2 cut(s) 4685, 4871
BstYI RGATCY 3 cut(s) 1021, 3997, 4603
Bsu15I ATCGAT 1 cut(s) 1452
Bsu36I CCTNAGG 2 cut(s) 2056, 2115
BsuI GTATCC 2 cut(s) 1655, 3969
BsuTUI ATCGAT 1 cut(s) 1452
BtgI CCRYGG 1 cut(s) 4284
BtgZI GCGATG 1 cut(s) 1014
BtrI CACGTC 1 cut(s) 1228
BtsI GCAGTG 2 cut(s) 3419, 3629
BveI ACCTGC 1 cut(s) 421
CaiI CAGNNNCTG 1 cut(s) 3821
CciI TCATGA 3 cut(s) 2797, 3553, 4459
CfoI GCGC 4 cut(s) 1920, 2583, 3043, 3309
Cfr10I RCCGGY 2 cut(s) 1920, 4264
ClaI ATCGAT 1 cut(s) 1452
CseI GACGC 2 cut(s) 4168, 4178
DraIII CACNNNGTG 2 cut(s) 1326, 4499
DriI GACNNNNNGTC 1 cut(s) 2552
EaeI YGGCCR 4 cut(s) 1178, 1588, 2303, 4942
Eam1104I CTCTTC 6 cut(s) 1155, 1671, 3239, 3493, 4323, 4434
Eam1105I GACNNNNNGTC 1 cut(s) 2552
EarI CTCTTC 6 cut(s) 1155, 1671, 3239, 3493, 4323, 4434
Eco105I TACGTA 1 cut(s) 1943
Eco130I CCWWGG 6 cut(s) 35, 2336, 2920, 4284, 4403, 4901
Eco147I AGGCCT 2 cut(s) 3742, 4755
Eco24I GRGCYC 2 cut(s) 3643, 3890
Eco31I GGTCTC 1 cut(s) 2209
Eco47I GGWCC 9 cut(s) 64, 77, 871, 905, 1117, 1362, 2459, 2546, 2762
Eco57I CTGAAG 7 cut(s) 102, 561, 2358, 3029, 3798, 4065, 4098
Eco72I CACGTG 1 cut(s) 1798
Eco81I CCTNAGG 2 cut(s) 2056, 2115
Eco88I CYCGRG 1 cut(s) 2199
Eco91I GGTNACC 1 cut(s) 4673
EcoNI CCTNNNNNAGG 1 cut(s) 576
EcoO109I RGGNCCY 6 cut(s) 77, 1362, 2459, 3886, 3887, 4400
EcoO65I GGTNACC 1 cut(s) 4673
EcoRI GAATTC 1 cut(s) 1961
EcoRII CCWGG 8 cut(s) 1145, 1364, 1747, 2231, 2454, 4396, 4480, 4743
EcoT14I CCWWGG 6 cut(s) 35, 2336, 2920, 4284, 4403, 4901
EcoT22I ATGCAT 3 cut(s) 2092, 2096, 3031
EcoT38I GRGCYC 2 cut(s) 3643, 3890
ErhI CCWWGG 6 cut(s) 35, 2336, 2920, 4284, 4403, 4901
FalI AAGNNNNNCTT 4 cut(s) 1860, 1892, 2716, 2748
FaqI GGGAC 2 cut(s) 536, 3799
FauI CCCGC 1 cut(s) 3434
FauNDI CATATG 2 cut(s) 2503, 3981
FbaI TGATCA 2 cut(s) 3609, 4759
FblI GTMKAC 1 cut(s) 4704
FriOI GRGCYC 2 cut(s) 3643, 3890
FspBI CTAG 7 cut(s) 36, 489, 1803, 2537, 3678, 4185, 4404
FspI TGCGCA 1 cut(s) 3308
GlaI GCGC 4 cut(s) 1919, 2582, 3042, 3308
GsaI CCCAGC 1 cut(s) 360
HaeII RGCGCY 1 cut(s) 1921
HapII CCGG 7 cut(s) 11, 67, 195, 1355, 1921, 3910, 4265
HgaI GACGC 2 cut(s) 4168, 4178
HhaI GCGC 4 cut(s) 1920, 2583, 3043, 3309
Hin1I GRCGYC 1 cut(s) 4189
Hin6I GCGC 4 cut(s) 1918, 2581, 3041, 3307
HinP1I GCGC 4 cut(s) 1918, 2581, 3041, 3307
HincII GTYRAC 2 cut(s) 1873, 3497
HindII GTYRAC 2 cut(s) 1873, 3497
HindIII AAGCTT 4 cut(s) 2321, 2684, 2864, 3135
HpaII CCGG 7 cut(s) 11, 67, 195, 1355, 1921, 3910, 4265
Hpy166II GTNNAC 9 cut(s) 865, 1383, 1873, 1907, 2528, 3497, 4180, 4705, 4832
Hpy8I GTNNAC 9 cut(s) 865, 1383, 1873, 1907, 2528, 3497, 4180, 4705, 4832
HpyCH4IV ACGT 5 cut(s) 1227, 1797, 1942, 2293, 2530
HpySE526I ACGT 5 cut(s) 1227, 1797, 1942, 2293, 2530
Hsp92I GRCGYC 1 cut(s) 4189
HspAI GCGC 4 cut(s) 1918, 2581, 3041, 3307
KpnI GGTACC 1 cut(s) 4039
KroI GCCGGC 1 cut(s) 1920
KroNI GCCGGC 1 cut(s) 1922
Ksp22I TGATCA 2 cut(s) 3609, 4759
LguI GCTCTTC 1 cut(s) 3493
LmnI GCTCC 3 cut(s) 718, 1433, 1915
MaeI CTAG 7 cut(s) 36, 489, 1803, 2537, 3678, 4185, 4404
MaeII ACGT 5 cut(s) 1227, 1797, 1942, 2293, 2530
MfeI CAATTG 1 cut(s) 2071
MflI RGATCY 3 cut(s) 1021, 3997, 4603
MhlI GDGCHC 8 cut(s) 715, 1385, 1438, 1467, 1503, 3643, 3890, 4299
MlsI TGGCCA 3 cut(s) 1590, 2305, 4944
MluNI TGGCCA 3 cut(s) 1590, 2305, 4944
MlyI GAGTC 4 cut(s) 3677, 3781, 3812, 4211
MmeI TCCRAC 9 cut(s) 342, 708, 1042, 2753, 2909, 3698, 4088, 4189, 4528
Mox20I TGGCCA 3 cut(s) 1590, 2305, 4944
Mph1103I ATGCAT 3 cut(s) 2092, 2096, 3031
MroNI GCCGGC 1 cut(s) 1920
MroXI GAANNNNTTC 2 cut(s) 146, 3389
MscI TGGCCA 3 cut(s) 1590, 2305, 4944
MslI CAYNNNNRTG 5 cut(s) 590, 811, 1472, 4126, 4596
Msp20I TGGCCA 3 cut(s) 1590, 2305, 4944
MspA1I CMGCKG 3 cut(s) 356, 1993, 3371
MspI CCGG 7 cut(s) 11, 67, 195, 1355, 1921, 3910, 4265
MspR9I CCNGG 9 cut(s) 196, 1147, 1366, 1749, 2233, 2456, 4398, 4482, 4745
MunI CAATTG 1 cut(s) 2071
Mva1269I GAATGC 6 cut(s) 416, 2794, 3031, 3309, 3523, 3849
MvaI CCWGG 8 cut(s) 1147, 1366, 1749, 2233, 2456, 4398, 4482, 4745
NaeI GCCGGC 1 cut(s) 1922
NciI CCSGG 1 cut(s) 196
NcoI CCATGG 1 cut(s) 4284
NdeI CATATG 2 cut(s) 2503, 3981
NgoMIV GCCGGC 1 cut(s) 1920
NsbI TGCGCA 1 cut(s) 3308
NsiI ATGCAT 3 cut(s) 2092, 2096, 3031
NspI RCATGY 5 cut(s) 1045, 2052, 2090, 2094, 3773
OliI CACNNNNGTG 1 cut(s) 4126
PacI TTAATTAA 1 cut(s) 981
PaeI GCATGC 2 cut(s) 2090, 2094
PagI TCATGA 3 cut(s) 2797, 3553, 4459
PaqCI CACCTGC 1 cut(s) 421
PceI AGGCCT 2 cut(s) 3742, 4755
PciI ACATGT 1 cut(s) 3769
PciSI GCTCTTC 1 cut(s) 3493
PcsI WCGNNNNNNNCGW 3 cut(s) 222, 1458, 4338
PctI GAATGC 6 cut(s) 416, 2794, 3031, 3309, 3523, 3849
PdiI GCCGGC 1 cut(s) 1922
PdmI GAANNNNTTC 2 cut(s) 146, 3389
PflFI GACNNNGTC 1 cut(s) 109
PflMI CCANNNNNTGG 2 cut(s) 394, 1495
PfoI TCCNGGA 2 cut(s) 4480, 4743
PleI GAGTC 4 cut(s) 3676, 3781, 3812, 4211
PmaCI CACGTG 1 cut(s) 1798
PmlI CACGTG 1 cut(s) 1798
PpsI GAGTC 4 cut(s) 3676, 3781, 3812, 4211
Ppu21I YACGTR 3 cut(s) 1798, 1943, 2531
PpuMI RGGWCCY 3 cut(s) 77, 1362, 2459
PscI ACATGT 1 cut(s) 3769
PshBI ATTAAT 3 cut(s) 981, 1173, 1389
PsiI TTATAA 2 cut(s) 927, 2109
Psp5II RGGWCCY 3 cut(s) 77, 1362, 2459
Psp6I CCWGG 8 cut(s) 1145, 1364, 1747, 2231, 2454, 4396, 4480, 4743
PspCI CACGTG 1 cut(s) 1798
PspEI GGTNACC 1 cut(s) 4673
PspFI CCCAGC 1 cut(s) 356
PspGI CCWGG 8 cut(s) 1145, 1364, 1747, 2231, 2454, 4396, 4480, 4743
PspOMI GGGCCC 1 cut(s) 3886
PspPPI RGGWCCY 3 cut(s) 77, 1362, 2459
PsrI GAACNNNNNNTAC 2 cut(s) 3556, 3588
PstI CTGCAG 3 cut(s) 355, 3010, 4804
PstNI CAGNNNCTG 1 cut(s) 3821
PsuI RGATCY 3 cut(s) 1021, 3997, 4603
PsyI GACNNNGTC 1 cut(s) 109
PvuII CAGCTG 3 cut(s) 356, 1993, 3371
RseI CAYNNNNRTG 5 cut(s) 590, 811, 1472, 4126, 4596
SapI GCTCTTC 1 cut(s) 3493
SchI GAGTC 4 cut(s) 3677, 3781, 3812, 4211
ScrFI CCNGG 9 cut(s) 196, 1147, 1366, 1749, 2233, 2456, 4398, 4482, 4745
SduI GDGCHC 8 cut(s) 715, 1385, 1438, 1467, 1503, 3643, 3890, 4299
SfcI CTRYAG 3 cut(s) 351, 3006, 4800
SinI GGWCC 9 cut(s) 64, 77, 871, 905, 1117, 1362, 2459, 2546, 2762
SmiMI CAYNNNNRTG 5 cut(s) 590, 811, 1472, 4126, 4596
SmlI CTYRAG 3 cut(s) 760, 1502, 2639
SmoI CTYRAG 3 cut(s) 760, 1502, 2639
SnaBI TACGTA 1 cut(s) 1943
SpeI ACTAGT 2 cut(s) 1802, 3677
SphI GCATGC 2 cut(s) 2090, 2094
SseBI AGGCCT 2 cut(s) 3742, 4755
SspI AATATT 4 cut(s) 1443, 1637, 2485, 4278
SspMI CTAG 7 cut(s) 36, 489, 1803, 2537, 3678, 4185, 4404
StuI AGGCCT 2 cut(s) 3742, 4755
StyD4I CCNGG 9 cut(s) 194, 1145, 1364, 1747, 2231, 2454, 4396, 4480, 4743
StyI CCWWGG 6 cut(s) 35, 2336, 2920, 4284, 4403, 4901
TaiI ACGT 5 cut(s) 1230, 1800, 1945, 2296, 2533
TaqI TCGA 7 cut(s) 113, 332, 447, 497, 1452, 3709, 4341
TatI WGTACW 4 cut(s) 201, 1904, 2045, 2511
TauI GCSGC 1 cut(s) 571
TspGWI ACGGA 3 cut(s) 613, 1414, 2775
Tth111I GACNNNGTC 1 cut(s) 109
Van91I CCANNNNNTGG 2 cut(s) 394, 1495
VneI GTGCAC 1 cut(s) 1381
VpaK11BI GGWCC 9 cut(s) 64, 77, 871, 905, 1117, 1362, 2459, 2546, 2762
VspI ATTAAT 3 cut(s) 981, 1173, 1389
XagI CCTNNNNNAGG 1 cut(s) 576
XapI RAATTY 7 cut(s) 1195, 1689, 1961, 2589, 2937, 3173, 4519
XceI RCATGY 5 cut(s) 1045, 2052, 2090, 2094, 3773
XmaJI CCTAGG 2 cut(s) 35, 4403
XmiI GTMKAC 1 cut(s) 4704
XmnI GAANNNNTTC 2 cut(s) 146, 3389
XspI CTAG 7 cut(s) 36, 489, 1803, 2537, 3678, 4185, 4404
Zsp2I ATGCAT 3 cut(s) 2092, 2096, 3031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.