FvH4_3g30100

WSTF, HB1, Itc1p, MBD9 motif 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007748
Physical Location & Seq
Reverse (-)
23321756 .. 23331178
9423 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30100.t3

Sequence Viewer

Length: 4944 bp
ATGGATCCTCCTCCAGCGGCGAAAAAGCGTGGGCGGCCGAGAAAGCGGCGAGCGGATAATCGGAAAGCGGGACCGGAGGCGAAGAAACAGGCGGTGGAGGCGAGATCGGTGGCGTTGCTGGGGCGGTACGTGTTGAAGGAGTTTGAAAAGAGTGGGATTTATCTGGGGAAGGTTGTGTTTTACGATACCGGATTGTATAGAGTGCACTATGAAGATGGCGATTCCGAGGACTTGGAAAGCGGTGAGATTCGGGGCATTCTGGTGGGTGAAAGTGATTTGGATGGGGATTTGAGTGCTAGGAGGAAGAGATTGGATAAGATAGTTGCCAAAGTAAGTGTCGAAAAGAAGGTTGAGGAGAATGTGGAGAAGGAGGTTGCGGTTGAATCTTCGGAATTCAGTGAGTGGAGCGGTAGAGTGACATTTGACAATGATGAGGTTAGGGAGGATGGTGATGGTGAGTTGTCTAGTGAATCCAGTGAGTGTGTGGGGGGTGTGGGGGGTGTGGAACCCGGGGTTGATGTTGAGACCCCGGCTGTGCCGCCACCGCAGTTGCCACCGTCTTCTGGGACCATAGGTGTGCCGGAGCAGTGCGTTTCGCATCTTTTGTCTGTGTATGGGTTTATGAGGTCGTTTAGTATATGCCTGTTCTTGAACCCGTTTACTTTGGATGATTTTGTGGGTTCGCTTAATTATCGTGCTCCAAACACATTGTTTGATGCGATTCATGTTGCTTTGTTGCGTGCTTTGAGACGGCATCTTGAAACAATCTCATCCGAAGGCTCAGAGCCTGCACAAAAATGTTTGAGGTGCATAGACTGGAGCTTGCTTGATACATTGACATGGCCTGTTTACTTGGTCCTGTATTTAACAATAATGGGATATGCAAAAGGACCAGAGTGGAAAGGCTTCTATGATGAGGTTTTGGATAGGGAGTATTATTTATTATCAGTTGATAGGAAGTTAATTATTTTGCAAATCATTTGTGACGATGTGTTAGATACTAGAGAAATAAGAGCTGAATTAGACATGCGTGAAGAATCAGAAGTTGGAATAGATTATGATGACGAAGCAACCGGTGCTCTTGTAAATGGGCCAAGAAGGGTCCATCCAAGATACTCCAAAACTTCTGCCTGCAAGGACAGAGAAGCAATGGAAATTGCTACTGAACCCCATGAGATAAAATCATTAAGTTCCAAAGTTTCAAAAGGGGAACTTGATGCTACCAATGTTGATTTGGATCGTAACTCTGACGAATGTCGGCTTTGTGGCATGGAGGGGACGTTGCTTTGCTGTGATGGATGCCCATCTGCCTACCACACGAGGTGTATAGGTGTGATGAAACTGTCGATACCAGAAGGATCCTGGTATTGTCCGGAGTGCGCTATTAACAAAATTGGGCCCACTATCACAGTTGGAACATCAGTTAAGGGAGCACAATTATTTGGGATAGATTCCTATGAGCACATCTTCTTGGGCACTTGCAACCACTTACTTGTGCTTAAGGAAACTATCAACACAGAACCATGTCTTAGATATTACAATCAGCATGACATTCCAAAAATTCTGAAAGTTCTTTATTCATTTGGGCAAAATACATCTTTTTATCTGGGCTTGTGCAAGGAAATTATAGAATATTGGAATATCCCAGAAAGCATCTTTTCTCTTTCAGAGCTGGCTGAATCAAAGACTAATTTGGCAAAGATAAAGGAAGAGGCGAACTTTCCTGCCCAGTCACTTTCTTTTTCTGGCAAGGATTGTCAAAAAGTTAAGGATATGGTCATGGCTGGGAACTACGAGACTTATGCAAATGAAGACAATTTAGATAAACCGGTTTCATCTTTTGAATGTCATGGTGATAGTACAGCACAGGAGTACCCGCAGAGGAATATGGAGATTGACAAGAGGAATAAAATAGAATATGCTATTTCGACCAGTTCTGGTACTCAGCCAGCTGATCCATCTTACTTGGTCCACAGAAGCTCAGTTGACAGATCAACTGCAATTGACCAGAGGACATGCATACCAGGGAACATCAACAGTGGTAACAAAGTGCATTCTAATGGTAGGCCTCTTTCAGCGCCTTCACAAAACGATGAAGGCGATCGTATAGGAAAGGTTTACTCCACTTCGCTTGATGATTGCATATACAAGGGTTCTCTCTTTAAACCCCATGCATACATAAATTACTATGTGCATGGAGATTTTGCTGCATCTGCTGCTGCAAAACTGGCTGTACTTTCATCAGAAGAAGCTCGGGGTTCAGATGTCCAGGCTTCAGGCAATACCCGGAAAGTTGCATCATCAAACAATTTATGGCAGGCAAAGGCCTTTTCACTAGCAGCCTCACGTTTCTTCTGGCCCAGTTTTGATAAGAAGCTTGTGGAGGTTCCAAGAGAGAGGTGTGGTTGGTGTCTTTCTTGTCAGGCTTCAGTTGCAAGCAAGAGAGGATGCATGCTAAATCATGCTTGTTTGAGTGCCACTAAAGGCGCTATGAAGATCCTTGCCAGCCTTCGTCCTATAAAGAGTGTGGAGGGGAATCTTGTAAGCATCGCAACATACATCTTATACATGGAGGAGAGTTTGCATGGTCTAATAACTGGCCCCTTTCTCAATGAAAATTTTAGGAAACAGTTGCGCCAACAAGTTTATCAAGCATCAACCTGCAGTTTAATAAAAGTCCTATTGCTCAAACTTGAGGAAAACATCAGAACAATTGCTCTTTCTGGGGAGTGGATTAAACTGGTAGATGATGTGCTGGTTGAATCTTCCATGATTCAAGGTCCTACGTGCACTGCTGGAACATCACAAAGACGTGGACCATACTTCAGGAGGGGAAGGAAACAAAGTGCAATTCAAGAGGTTATAGATGATGAGTGCAATGACAAGAGTTTCGTATGGTGGCAAGGAGGGAAGCTGTCAAAAATCATATTCCAGAGAGCAATTTTGCCCTGCTCATTAGTTAAAAAAGCAGCTCGCCAAGGTGGATCGAGGAAAATTTTTGGTGTATCTTATGCTGATGGTCCTGATATTCCTAAAAGAAGCAGACAATCAGTATGGAGGGCTGCAGTTGAATTGAGCAAGAAGGGATCCCAGCTTGCAGTTCAGGTTAGATACTTGGACTATCATTTGAGGTGGAGTGATCTTGTTCGCCCTGAGCAAAACCTCCTTGACGGGAAAGCTGCAGAGGCAGAAGCTTCTGCGTTTAGAAATGCAAGTATATGTGATAAAAAAATGTTAAAGAACAACATCGTCTATGGGGTTGCATTTGGTAGTCAAAAGCATCTGCCTAACCGTGTAATGAAAAGTATCATTGAGACAGAGCAGAATCAAGATGGAACGAACAAGTTCTGGTTTCTTGAATCCCGCATTCCTTTATATTTGATTAAGGAGTATGAAGAAAGTGTAGCTAAAGTGCCTATGCCATCAGTTCAGGAGCCTAATCTATTGAACAAGTTACAGAGAAGGCAGCGGAATGCGATCCGCAGGGACATATTTTATTATCTCGAGTGTAAGAGAGATAATCTGGACTTGATTATCTGCTCTTTGTGTCAACTGGAAATATTAGTGCGGAATGCAGTCAAGTGCAGTTCTTGTCAAGGTTATTGTCACGAGGCCTGTACCATAAGTTCCACAGTTTCTACAAATGAGGAAGTTGAGTTCTTGATCACCTGCAAGCAGTGCTACCATATGAAAGTTCTTGCCGAAAAGCAAAAGTTTAAGGAGTTTCCAACTAATCCTTTGCCCTTGCAAAAGAAAGAATATCATACTCCACTGACAGTCACAACTGCTGGAAGGCCTAAATACCATAACCAATCAGTAACCTCTATCAAGGTTCAGGAGCCTCGTTCTGAGATTAAACAAGCTACCACAGACTCAGGTTTGGCAACAAAAAAACGCCGCCCAATTTGTTCTTGGGGTGTTATATGGAAGAAGAAGACTCCGGAAACCGGCACCGATTTCAGGATTAATAACATACTCCTTGGGGGTCGTTCGAATGTGCATGGGTTGAAACCTGTTTGCCACTTGTGCCATATGCCATATATGTCTGATCTGACATATATATGCTGTGAATTTTGCAAAAATTGGTACCATGCTGAAGCTGTTGAACTTGAGGAGTCAAAGATCTGTGATGTGGCAGGCTTCAAGTGTTGCAAGTGTCGCAGGATAAAATCACCTCTTTGTCCTTATACTGATCTCAAAGATAAGACCTTGCAAGAGAGCAAGAAGATTCGCATTAGGCGTTCAAAGCAAGAAAATATTGGAGAGGACTCGGATTCTGCATCCTATTTGGATTCTGAGGTGTTTGAACCTACTACTCCAGTGTTTCCCATGGAGGAAGTCTCCATCCAGGATGATGATCCTCTTCTTTTTGCTCTCTCAAGAGTGGAGCTAATTACAGAACACAATTCAGAAGTTGATGCTGAATGGGATACTGCTGGGCCAGGGCCACGAAAATTACCTGTGAGAAGGCAGGTTAAGCGTGAAGAAGACTTGGATATATATTGTCAGAGTAACAATTCTCATGCCGAAAGAACTATGCATGAAGAAACAAATTATGTGTCAGAACCGATGGAGGTTGCGGCATTCCCTCATGTGGAATGGGATGCTTCCATGAATGGCGTTAATGGTGAGATGATGGGAGAGTATGAAGATCTGAATTACGATTTTATGGAACCGCAAACTGTCTTTACTATCAATGAGTTGCTGGCACCTGATGACGGCGACCTTTTTGATGGAGCTGAAACATTTGCGGATATACCAGGAAATATGGACAATCCATATACAACTTTGCAGCATGTAGGCGCTGAGCAATATAATGTTGACACTTTCACAGACGAACCAAATAACTGTGGGCTATTAATACATAACCATTGTTCCCCTTGGTTTGAGTCATCATCTCAGAATGACAGCTGGAAGTGTGGACAGTGTCGGGAATGGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009941 GO:0009987 GO:0010019 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016589 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019867 GO:0023052 GO:0031010 GO:0031090 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031967 GO:0031968 GO:0031969 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0035064 GO:0042170 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051716 GO:0060255 GO:0060322 GO:0065007 GO:0070013 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0098588 GO:0098805 GO:0140030 GO:0140034 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1904949 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT PHD WHIM1

Protein Analysis

1648

Amino Acids

185.38

Weight (kDa)

5.77

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTM_DIR17_Tudor PF21743 41 - 87 1.4e-14 PTM/DIR17-like, Tudor domain
DDT PF02791 196 - 252 3.8e-18 DDT domain
WHIM1 PF15612 298 - 342 2.3e-10 WSTF, HB1, Itc1p, MBD9 motif 1
PHD PF00628 419 - 460 5.6e-08 PHD-finger
Chromo_PTM PF24294 1065 - 1137 9.7e-33 Membrane-bound transcription factor PTM, chromo domain-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 3677
Acc36I ACCTGC 3 cut(s) 2669, 3677, 4462
Acc65I GGTACC 1 cut(s) 4086
AccB1I GGYRCC 3 cut(s) 3950, 4086, 4708
AccBSI CCGCTC 2 cut(s) 53, 408
AccIII TCCGGA 2 cut(s) 1372, 3940
AcoI YGGCCR 1 cut(s) 35
AcsI RAATTY 5 cut(s) 392, 1560, 2617, 2994, 4070
AcuI CTGAAG 4 cut(s) 2259, 2412, 2809, 4116
AdeI CACNNNGTG 1 cut(s) 1323
AfaI GTAC 7 cut(s) 128, 1861, 1874, 1942, 2235, 3619, 4088
AfiI CCNNNNNNNGG 5 cut(s) 563, 3947, 3960, 4594, 4718
AflII CTTAAG 1 cut(s) 1499
AflIII ACRYGT 1 cut(s) 129
AgeI ACCGGT 2 cut(s) 1073, 1828
AjiI CACGTC 1 cut(s) 2813
AjnI CCWGG 6 cut(s) 1361, 2023, 2268, 4347, 4441, 4759
AjuI GAANNNNNNNTTGG 2 cut(s) 1029, 1061
AloI GAACNNNNNNTCC 2 cut(s) 3641, 3673
Alw21I GWGCWC 6 cut(s) 207, 700, 1081, 1435, 1464, 2792
Alw26I GTCTC 5 cut(s) 518, 742, 1790, 3308, 4345
Alw44I GTGCAC 2 cut(s) 203, 2788
AlwNI CAGNNNCTG 1 cut(s) 788
Ama87I CYCGRG 3 cut(s) 509, 2253, 3503
Aor13HI TCCGGA 2 cut(s) 1372, 3940
ApaI GGGCCC 1 cut(s) 1401
ApaLI GTGCAC 2 cut(s) 203, 2788
ApeKI GCWGC 9 cut(s) 2207, 2216, 2219, 2339, 2969, 3062, 3179, 3466, 4792
ApoI RAATTY 5 cut(s) 392, 1560, 2617, 2994, 4070
ArsI GACNNNNNNTTYG 6 cut(s) 321, 353, 2873, 2905, 4544, 4576
AseI ATTAAT 2 cut(s) 3966, 4859
AsiGI ACCGGT 2 cut(s) 1073, 1828
Asp700I GAANNNNTTC 2 cut(s) 905, 3344
Asp718I GGTACC 1 cut(s) 4086
AspLEI GCGC 5 cut(s) 1382, 2080, 2489, 2637, 4805
AsuC2I CCSGG 4 cut(s) 510, 511, 530, 2287
AsuHPI GGTGA 8 cut(s) 254, 278, 461, 467, 1865, 3658, 4164, 4640
AsuII TTCGAA 1 cut(s) 3992
AvaI CYCGRG 3 cut(s) 509, 2253, 3503
AvaII GGWCC 9 cut(s) 71, 567, 856, 890, 1102, 1969, 2780, 2816, 3020
BaeGI GKGCMC 4 cut(s) 207, 1401, 1478, 2792
BaeI ACNNNNGTAYC 2 cut(s) 1856, 1889
BamHI GGATCC 3 cut(s) 4, 1358, 3086
BanI GGYRCC 3 cut(s) 3950, 4086, 4708
BanII GRGCYC 1 cut(s) 1401
BauI CACGAG 2 cut(s) 1318, 3608
BbsI GAAGAC 4 cut(s) 552, 1818, 3941, 4494
Bbv12I GWGCWC 6 cut(s) 207, 700, 1081, 1435, 1464, 2792
BbvI GCAGC 9 cut(s) 2194, 2203, 2206, 2351, 2981, 3049, 3166, 3478, 4804
BceAI ACGGC 2 cut(s) 767, 4735
BcgI CGANNNNNNTGC 2 cut(s) 1784, 1818
BciT130I CCWGG 6 cut(s) 1363, 2025, 2270, 4349, 4443, 4761
BciVI GTATCC 1 cut(s) 4423
BclI TGATCA 1 cut(s) 3663
BcnI CCSGG 4 cut(s) 510, 511, 530, 2287
BcoDI GTCTC 5 cut(s) 518, 742, 1790, 3308, 4345
BfaI CTAG 4 cut(s) 297, 465, 1002, 2336
BfmI CTRYAG 3 cut(s) 2662, 3063, 3180
BfoI RGCGCY 3 cut(s) 2081, 2490, 4806
BfrI CTTAAG 1 cut(s) 1499
BfuAI ACCTGC 3 cut(s) 2669, 3677, 4462
BfuI GTATCC 1 cut(s) 4423
BglII AGATCT 2 cut(s) 4122, 4651
BlpI GCTNAGC 1 cut(s) 4806
Bme18I GGWCC 9 cut(s) 71, 567, 856, 890, 1102, 1969, 2780, 2816, 3020
BmeT110I CYCGRG 3 cut(s) 509, 2253, 3503
BmgBI CACGTC 1 cut(s) 2813
BmrI ACTGGG 2 cut(s) 1723, 2355
BmuI ACTGGG 2 cut(s) 1723, 2355
BoxI GACNNNNGTC 1 cut(s) 1254
BpiI GAAGAC 4 cut(s) 552, 1818, 3941, 4494
BplI GAGNNNNNCTC 2 cut(s) 4325, 4357
BpmI CTGGAG 2 cut(s) 838, 4302
Bpu10I CCTNAGC 1 cut(s) 3153
Bpu1102I GCTNAGC 1 cut(s) 4806
Bpu14I TTCGAA 1 cut(s) 3992
BpuEI CTTGAG 3 cut(s) 2714, 4130, 4363
BpuMI CCSGG 4 cut(s) 510, 511, 530, 2287
BsaAI YACGTR 2 cut(s) 130, 2787
BsaBI GATNNNNATC 3 cut(s) 1236, 1303, 4356
BsaI GGTCTC 1 cut(s) 518
BsaWI WCCGGW 6 cut(s) 73, 188, 1073, 1372, 1828, 3940
BsaXI ACNNNNNCTCC 2 cut(s) 1265, 1295
Bsc4I CCNNNNNNNGG 5 cut(s) 563, 3947, 3960, 4594, 4718
Bse118I RCCGGY 3 cut(s) 1073, 1828, 3947
Bse3DI GCAATG 2 cut(s) 1155, 2884
Bse8I GATNNNNATC 3 cut(s) 1236, 1303, 4356
BseAI TCCGGA 2 cut(s) 1372, 3940
BseBI CCWGG 6 cut(s) 1363, 2025, 2270, 4349, 4443, 4761
BseJI GATNNNNATC 3 cut(s) 1236, 1303, 4356
BseLI CCNNNNNNNGG 5 cut(s) 563, 3947, 3960, 4594, 4718
BseMI GCAATG 2 cut(s) 1155, 2884
BseMII CTCAG 9 cut(s) 795, 1958, 1995, 3144, 3840, 3888, 4287, 4797, 4913
BseRI GAGGAG 3 cut(s) 368, 2588, 4127
BseSI GKGCMC 4 cut(s) 207, 1401, 1478, 2792
BseX3I CGGCCG 1 cut(s) 35
BseXI GCAGC 9 cut(s) 2194, 2203, 2206, 2351, 2981, 3049, 3166, 3478, 4804
BseYI CCCAGC 4 cut(s) 118, 1784, 3090, 4436
BsgI GTGCAG 2 cut(s) 774, 3604
Bsh1285I CGRYCG 2 cut(s) 38, 2104
BshNI GGYRCC 3 cut(s) 3950, 4086, 4708
BshTI ACCGGT 2 cut(s) 1073, 1828
BsiEI CGRYCG 2 cut(s) 38, 2104
BsiHKAI GWGCWC 6 cut(s) 207, 700, 1081, 1435, 1464, 2792
BsiHKCI CYCGRG 3 cut(s) 509, 2253, 3503
BslFI GGGAC 4 cut(s) 84, 580, 1291, 3500
BslI CCNNNNNNNGG 5 cut(s) 563, 3947, 3960, 4594, 4718
BsmAI GTCTC 5 cut(s) 518, 742, 1790, 3308, 4345
BsmBI CGTCTC 1 cut(s) 742
BsmFI GGGAC 4 cut(s) 84, 580, 1291, 3500
BsmI GAATGC 6 cut(s) 255, 2053, 3366, 3478, 3577, 4583
Bso31I GGTCTC 1 cut(s) 518
BsoBI CYCGRG 3 cut(s) 509, 2253, 3503
Bsp119I TTCGAA 1 cut(s) 3992
Bsp120I GGGCCC 1 cut(s) 1397
Bsp1286I GDGCHC 8 cut(s) 207, 700, 1081, 1401, 1435, 1464, 1478, 2792
Bsp13I TCCGGA 2 cut(s) 1372, 3940
Bsp1720I GCTNAGC 1 cut(s) 4806
Bsp19I CCATGG 1 cut(s) 4329
BspCNI CTCAG 9 cut(s) 794, 1957, 1994, 3145, 3841, 3887, 4288, 4798, 4912
BspEI TCCGGA 2 cut(s) 1372, 3940
BspMAI CTGCAG 3 cut(s) 2666, 3067, 3184
BspMI ACCTGC 3 cut(s) 2669, 3677, 4462
BspT104I TTCGAA 1 cut(s) 3992
BspT107I GGYRCC 3 cut(s) 3950, 4086, 4708
BspTI CTTAAG 1 cut(s) 1499
BspTNI GGTCTC 1 cut(s) 518
BsrBI CCGCTC 2 cut(s) 53, 408
BsrDI GCAATG 2 cut(s) 1155, 2884
BsrFI RCCGGY 3 cut(s) 1073, 1828, 3947
BssAI RCCGGY 3 cut(s) 1073, 1828, 3947
BssSI CACGAG 2 cut(s) 1318, 3608
BssT1I CCWWGG 4 cut(s) 2977, 3979, 4329, 4880
Bst2BI CACGAG 2 cut(s) 1318, 3608
Bst2UI CCWGG 6 cut(s) 1363, 2025, 2270, 4349, 4443, 4761
Bst6I CTCTTC 3 cut(s) 299, 1704, 4368
BstAFI CTTAAG 1 cut(s) 1499
BstAPI GCANNNNNTGC 3 cut(s) 1076, 2216, 3678
BstBAI YACGTR 2 cut(s) 130, 2787
BstBI TTCGAA 1 cut(s) 3992
BstDSI CCRYGG 1 cut(s) 4329
BstH2I RGCGCY 3 cut(s) 2081, 2490, 4806
BstHHI GCGC 5 cut(s) 1382, 2080, 2489, 2637, 4805
BstMAI GTCTC 5 cut(s) 518, 742, 1790, 3308, 4345
BstMCI CGRYCG 2 cut(s) 38, 2104
BstNI CCWGG 6 cut(s) 1363, 2025, 2270, 4349, 4443, 4761
BstNSI RCATGY 4 cut(s) 1030, 2019, 2455, 4799
BstPAI GACNNNNGTC 1 cut(s) 1254
BstSFI CTRYAG 3 cut(s) 2662, 3063, 3180
BstSLI GKGCMC 4 cut(s) 207, 1401, 1478, 2792
BstV1I GCAGC 9 cut(s) 2194, 2203, 2206, 2351, 2981, 3049, 3166, 3478, 4804
BstV2I GAAGAC 4 cut(s) 552, 1818, 3941, 4494
BstX2I RGATCY 6 cut(s) 4, 1358, 2496, 3086, 4122, 4651
BstYI RGATCY 6 cut(s) 4, 1358, 2496, 3086, 4122, 4651
BstZI CGGCCG 1 cut(s) 35
BsuI GTATCC 1 cut(s) 4423
BtgI CCRYGG 1 cut(s) 4329
BtgZI GCGATG 1 cut(s) 2533
BtrI CACGTC 1 cut(s) 2813
BtsI GCAGTG 3 cut(s) 593, 2790, 3683
BtsIMutI CAGTG 9 cut(s) 403, 481, 593, 2044, 2790, 3683, 3770, 4326, 4931
BveI ACCTGC 3 cut(s) 2669, 3677, 4462
CaiI CAGNNNCTG 1 cut(s) 788
CfoI GCGC 5 cut(s) 1382, 2080, 2489, 2637, 4805
Cfr10I RCCGGY 3 cut(s) 1073, 1828, 3947
Cfr9I CCCGGG 1 cut(s) 509
Csp6I GTAC 7 cut(s) 127, 1860, 1873, 1941, 2234, 3618, 4087
CspAI ACCGGT 2 cut(s) 1073, 1828
CspCI CAANNNNNGTGG 4 cut(s) 531, 566, 2113, 2148
CviQI GTAC 7 cut(s) 127, 1860, 1873, 1941, 2234, 3618, 4087
DraI TTTAAA 1 cut(s) 2164
DraIII CACNNNGTG 1 cut(s) 1323
EaeI YGGCCR 1 cut(s) 35
EagI CGGCCG 1 cut(s) 35
Eam1104I CTCTTC 3 cut(s) 299, 1704, 4368
EarI CTCTTC 3 cut(s) 299, 1704, 4368
EclXI CGGCCG 1 cut(s) 35
Eco130I CCWWGG 4 cut(s) 2977, 3979, 4329, 4880
Eco147I AGGCCT 4 cut(s) 2068, 2327, 3614, 3796
Eco24I GRGCYC 1 cut(s) 1401
Eco31I GGTCTC 1 cut(s) 518
Eco47I GGWCC 9 cut(s) 71, 567, 856, 890, 1102, 1969, 2780, 2816, 3020
Eco52I CGGCCG 1 cut(s) 35
Eco57I CTGAAG 4 cut(s) 2259, 2412, 2809, 4116
Eco88I CYCGRG 3 cut(s) 509, 2253, 3503
EcoO109I RGGNCCY 1 cut(s) 2780
EcoRI GAATTC 1 cut(s) 392
EcoRII CCWGG 6 cut(s) 1361, 2023, 2268, 4347, 4441, 4759
EcoT14I CCWWGG 4 cut(s) 2977, 3979, 4329, 4880
EcoT22I ATGCAT 4 cut(s) 2021, 2176, 2453, 4542
EcoT38I GRGCYC 1 cut(s) 1401
ErhI CCWWGG 4 cut(s) 2977, 3979, 4329, 4880
Esp3I CGTCTC 1 cut(s) 742
FalI AAGNNNNNCTT 2 cut(s) 1197, 1229
FaqI GGGAC 4 cut(s) 84, 580, 1291, 3500
FauI CCCGC 3 cut(s) 61, 1884, 3371
FauNDI CATATG 2 cut(s) 3687, 4032
FbaI TGATCA 1 cut(s) 3663
FriOI GRGCYC 1 cut(s) 1401
FspBI CTAG 4 cut(s) 297, 465, 1002, 2336
GlaI GCGC 5 cut(s) 1381, 2079, 2488, 2636, 4804
GsaI CCCAGC 4 cut(s) 122, 1788, 3094, 4440
GsuI CTGGAG 2 cut(s) 838, 4302
HaeII RGCGCY 3 cut(s) 2081, 2490, 4806
HhaI GCGC 5 cut(s) 1382, 2080, 2489, 2637, 4805
Hin6I GCGC 5 cut(s) 1380, 2078, 2487, 2635, 4803
HinP1I GCGC 5 cut(s) 1380, 2078, 2487, 2635, 4803
HincII GTYRAC 3 cut(s) 1987, 3551, 4822
HindII GTYRAC 3 cut(s) 1987, 3551, 4822
HindIII AAGCTT 2 cut(s) 2375, 3192
HphI GGTGA 8 cut(s) 254, 278, 461, 467, 1865, 3658, 4164, 4640
HpyCH4IV ACGT 5 cut(s) 129, 1280, 2347, 2786, 2812
HpySE526I ACGT 5 cut(s) 129, 1280, 2347, 2786, 2812
HspAI GCGC 5 cut(s) 1380, 2078, 2487, 2635, 4803
Kpn2I TCCGGA 2 cut(s) 1372, 3940
KpnI GGTACC 1 cut(s) 4090
Ksp22I TGATCA 1 cut(s) 3663
LmnI GCTCC 9 cut(s) 405, 583, 703, 819, 1430, 3433, 3838, 4387, 4736
Lsp1109I GCAGC 9 cut(s) 2194, 2203, 2206, 2351, 2981, 3049, 3166, 3478, 4804
MaeI CTAG 4 cut(s) 297, 465, 1002, 2336
MaeII ACGT 5 cut(s) 129, 1280, 2347, 2786, 2812
MbiI CCGCTC 2 cut(s) 53, 408
MfeI CAATTG 2 cut(s) 2001, 2712
MflI RGATCY 6 cut(s) 4, 1358, 2496, 3086, 4122, 4651
MhlI GDGCHC 8 cut(s) 207, 700, 1081, 1401, 1435, 1464, 1478, 2792
MlyI GAGTC 5 cut(s) 3866, 3931, 4124, 4262, 4898
MmeI TCCRAC 3 cut(s) 1027, 1393, 3752
Mph1103I ATGCAT 4 cut(s) 2021, 2176, 2453, 4542
MroI TCCGGA 2 cut(s) 1372, 3940
MroXI GAANNNNTTC 2 cut(s) 905, 3344
MslI CAYNNNNRTG 6 cut(s) 260, 575, 796, 838, 2058, 4060
MspA1I CMGCKG 4 cut(s) 17, 1952, 3469, 4911
MspCI CTTAAG 1 cut(s) 1499
MunI CAATTG 2 cut(s) 2001, 2712
Mva1269I GAATGC 6 cut(s) 255, 2053, 3366, 3478, 3577, 4583
MvaI CCWGG 6 cut(s) 1363, 2025, 2270, 4349, 4443, 4761
NciI CCSGG 4 cut(s) 510, 511, 530, 2287
NcoI CCATGG 1 cut(s) 4329
NdeI CATATG 2 cut(s) 3687, 4032
NmeAIII GCCGAG 1 cut(s) 63
NmuCI GTSAC 5 cut(s) 415, 983, 1731, 3605, 3778
NsiI ATGCAT 4 cut(s) 2021, 2176, 2453, 4542
NspI RCATGY 4 cut(s) 1030, 2019, 2455, 4799
NspV TTCGAA 1 cut(s) 3992
PaeI GCATGC 1 cut(s) 2455
PaeR7I CTCGAG 1 cut(s) 3503
PaqCI CACCTGC 1 cut(s) 3677
PceI AGGCCT 4 cut(s) 2068, 2327, 3614, 3796
PcsI WCGNNNNNNNCGW 2 cut(s) 2097, 4237
PctI GAATGC 6 cut(s) 255, 2053, 3366, 3478, 3577, 4583
PdmI GAANNNNTTC 2 cut(s) 905, 3344
PflFI GACNNNGTC 1 cut(s) 4926
PfoI TCCNGGA 1 cut(s) 4347
PinAI ACCGGT 2 cut(s) 1073, 1828
Ple19I CGATCG 1 cut(s) 2104
PleI GAGTC 5 cut(s) 3866, 3931, 4123, 4262, 4897
PpsI GAGTC 5 cut(s) 3866, 3931, 4123, 4262, 4897
Ppu21I YACGTR 2 cut(s) 130, 2787
PpuMI RGGWCCY 1 cut(s) 2780
PshAI GACNNNNGTC 1 cut(s) 1254
PshBI ATTAAT 2 cut(s) 3966, 4859
Psp5II RGGWCCY 1 cut(s) 2780
Psp6I CCWGG 6 cut(s) 1361, 2023, 2268, 4347, 4441, 4759
PspFI CCCAGC 4 cut(s) 118, 1784, 3090, 4436
PspGI CCWGG 6 cut(s) 1361, 2023, 2268, 4347, 4441, 4759
PspOMI GGGCCC 1 cut(s) 1397
PspPPI RGGWCCY 1 cut(s) 2780
PsrI GAACNNNNNNTAC 2 cut(s) 3610, 3642
PstI CTGCAG 3 cut(s) 2666, 3067, 3184
PstNI CAGNNNCTG 1 cut(s) 788
PsuI RGATCY 6 cut(s) 4, 1358, 2496, 3086, 4122, 4651
PsyI GACNNNGTC 1 cut(s) 4926
PvuI CGATCG 1 cut(s) 2104
PvuII CAGCTG 2 cut(s) 1952, 4911
RsaI GTAC 7 cut(s) 128, 1861, 1874, 1942, 2235, 3619, 4088
RsaNI GTAC 7 cut(s) 127, 1860, 1873, 1941, 2234, 3618, 4087
RseI CAYNNNNRTG 6 cut(s) 260, 575, 796, 838, 2058, 4060
SchI GAGTC 5 cut(s) 3866, 3931, 4124, 4262, 4898
SduI GDGCHC 8 cut(s) 207, 700, 1081, 1401, 1435, 1464, 1478, 2792
SfcI CTRYAG 3 cut(s) 2662, 3063, 3180
Sfr274I CTCGAG 1 cut(s) 3503
SfuI TTCGAA 1 cut(s) 3992
SinI GGWCC 9 cut(s) 71, 567, 856, 890, 1102, 1969, 2780, 2816, 3020
SlaI CTCGAG 1 cut(s) 3503
SmaI CCCGGG 1 cut(s) 511
SmiMI CAYNNNNRTG 6 cut(s) 260, 575, 796, 838, 2058, 4060
SmlI CTYRAG 5 cut(s) 1499, 2693, 3503, 4109, 4378
SmoI CTYRAG 5 cut(s) 1499, 2693, 3503, 4109, 4378
SphI GCATGC 1 cut(s) 2455
SseBI AGGCCT 4 cut(s) 2068, 2327, 3614, 3796
SspI AATATT 3 cut(s) 1634, 3561, 4258
SspMI CTAG 4 cut(s) 297, 465, 1002, 2336
StuI AGGCCT 4 cut(s) 2068, 2327, 3614, 3796
StyI CCWWGG 4 cut(s) 2977, 3979, 4329, 4880
TaiI ACGT 5 cut(s) 132, 1283, 2350, 2789, 2815
TaqI TCGA 6 cut(s) 339, 1346, 1928, 2987, 3504, 3992
TatI WGTACW 2 cut(s) 1859, 2233
TauI GCSGC 6 cut(s) 20, 37, 49, 541, 3900, 4583
TscAI CASTG 9 cut(s) 403, 481, 593, 2044, 2797, 3683, 3777, 4326, 4931
TseFI GTSAC 5 cut(s) 415, 983, 1731, 3605, 3778
TseI GCWGC 9 cut(s) 2207, 2216, 2219, 2339, 2969, 3062, 3179, 3466, 4792
Tsp45I GTSAC 5 cut(s) 415, 983, 1731, 3605, 3778
TspMI CCCGGG 1 cut(s) 509
TspRI CASTG 9 cut(s) 403, 481, 593, 2044, 2797, 3683, 3777, 4326, 4931
Tth111I GACNNNGTC 1 cut(s) 4926
Vha464I CTTAAG 1 cut(s) 1499
VneI GTGCAC 2 cut(s) 203, 2788
VpaK11BI GGWCC 9 cut(s) 71, 567, 856, 890, 1102, 1969, 2780, 2816, 3020
VspI ATTAAT 2 cut(s) 3966, 4859
XapI RAATTY 5 cut(s) 392, 1560, 2617, 2994, 4070
XceI RCATGY 4 cut(s) 1030, 2019, 2455, 4799
XcmI CCANNNNNNNNNTGG 4 cut(s) 481, 1231, 1359, 3909
XhoI CTCGAG 1 cut(s) 3503
XmaI CCCGGG 1 cut(s) 509
XmnI GAANNNNTTC 2 cut(s) 905, 3344
XspI CTAG 4 cut(s) 297, 465, 1002, 2336
Zsp2I ATGCAT 4 cut(s) 2021, 2176, 2453, 4542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.