Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010089

Physical Location & Seq

Genomic Coordinates Forward (+)

24119699 .. 24129440

Gene Structure 9742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g30730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2205 bp

ATGTCCGCCTCTCGCCCACCCTCCGCCTTCGACAAGCTCATGTCCGGCGCACGCGCCGCCGCCGCCAAGAAACGCAAAACCCCACCGGCCCCCATAGAAAACCCCAAATCCGACGAGGCTTCCGCTACTCCGATCCCCGCCGCGGAATCCAAACCAGAAACGGTGAAAGAAGCTCAAGAAGACGCCGGCAAGCCGGCACCGGCGCCGAGGAAACCGCGCGCGGCGAGCGTAGCGGAGGAGCGGACGGCTCAATTGACGAGTCGGATTGAGCTGCTGAAGAAGAAGGCGTTGGAGTTTGACCCGAGTGCAGTGGCGAATTGGGGCAAAGGCGATAGGGTTCCGTTTATGTTTTTTGCTTTGGCTTTTGATTTGATTGACAAGGAGAGTAAGAGGATTGTGATTACGGATATAGTGTGTAATATGTTGAGGACTGTAATCCACACCACGCCGGAGGATTTGCTCCCGGCGGTTTATCTCTCGGCTAATAAGATTGCTCCGGCGCATGAAGGCTTGGAGCTCGGCATTGGGGACGCTTCGATTATCAAGGCGCTTGCTGAGGCTTGTGGGAAGAGTGAGAAGGATGTTAAGAAGCGCTATGATGCAGAAGGAGACTTGGGTATTGTTGCACAGAATAGCCGTTCACAACAGAAAATGATGTGGAAGCCTGAACCATTGACTGTCACTAAGGTTTTCAACACATTTCGTGTCCTTGCTAAGGAATCTGGGAAGGACAGCCAGGAAAAGAAAAAGAACCATATGAAGGCACTTCTTGTTGCTGCCGCTGACTGCGAACCTAAGTATTTGATCCGTTTGCTTCAGTCGAAGTTGCGAATTGGATTAGCAGAGCAAACCCTTTTGGCCGCACTGGGACAAGCTGCAGTCTATTCTGAAGAACATTCTACACCACCTCCTGAAATTCAGTCTCCTTTAGAAGAGGCTGCAAGGATTGTTAAACAAGTGTACTCTCTGCTTCCTGTCTACGATAGGATCATCCCTGCCCTTCTGAGTGGTGGTGTTTGGAATCTTTCAAAAACATGTAGTTTTACTTTGGGTATCCCAGTTGGACCTATGCTTGCAAAGCCCAGTAAAGGGGTATCTGAGATTGTACAAAAGTTTCAGGATACAGAATATACCTGCGAATACAAGTATGATGGAGAACGTGCGCAGATACATTACATGGAGGATGGTTCTGTTGAGATATACAGTCGAAATGCTGAACGGAACACTGGAAAGTTCCCTGATGTTGCGGTTGCAGTGTCAAGTTGCAGGTTAAAGAAGTCGTCTGTAAAATCATTTGTCTTAGACTGTGAATTGGTTGCCTATGACCGTGAAAATAACAAAATTCTACCCTTCCAGGTACTTAGCACTCGAGCCCGTAAAAATGTGAGCATCAGCGATATTAAGATTGAGGTCTGCATATTTGCTTTTGATATATTGTTTCACAATGGTCAACCACTTACACAAGAGCAGCTCAAAGTTCGTAGAGAGTATCTTTATGACTCTTTCAAGGAAGAAGCTGGAGTTTTTCAGTTTGCCACAGCAATAACCTCAAAGGATATTGATGAAATACAGAAGTTTCTTGATGCTGCCGTTAATTCAAGTTCTGAGGGTTTAATAATCAAAACATTAAACAAAGATGCTACATATGAGCCTTCAAAGCGGTCACTGAACTGGCTGAAATTGAAGAAAGATTACATGGATAGTTTTGGGGACTCACTGGACTTGGTACCTATTGCTGCTTTCCATGGTCGGGGCAAACGTACAGGTGTCTATGGCGCCTTTCTCCTTGCTTGCTACGATAGCGGTAATGAAGAATTTCAAAGCATATGCAAAATAGGCACTGGATTTTCTGAAGCTGTGCTTGAAGAACGTTCTGTCGGCCTGCGTGAAAAAGTGATACCCAAATCTAAGACATACTATAGCTATGCAGACACAAGTAATGCTAATACTCCAGATGTATGGTTTGAACCCAGTCAGGTTTGGGAGGTGAAAGCCGCTGACTTGACTATTAGTCCTGTGTATCGTGCTGCAGTAGGCATAGTGGATGCTAACAAGGGTATTTCTCTTCGATTTCCACGCCTTGTTCGTGTTAGGGAAGATAAAAAACCGGAGGAAGCTTCATCATCTGAGCAGGTTGCTGAGATGTATACTGCTCAATCTAACAAAAGTTCTAACCACCAAGATGACAAGGAAGATGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000012 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006302 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016874 GO:0016886 GO:0022616 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0070013 GO:0070988 GO:0071704 GO:0080111 GO:0090304 GO:0140097 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03030 ko03410 ko03420 ko03430 map03030 map03410 map03420 map03430

Pfam Domains

Protein Families

DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_A_N

Protein Analysis

735

Amino Acids

81.26

Weight (kDa)

7.08

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_ligase_A_N	PF04675	114 - 289	9.9e-52	DNA ligase N terminus
DNA_ligase_A_M	PF01068	356 - 562	1.6e-65	ATP dependent DNA ligase domain
RNA_ligase	PF09414	376 - 561	2.8e-06	RNA ligase
DNA_ligase_A_C	PF04679	587 - 701	1.5e-21	ATP dependent DNA ligase C terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08130
fragaria_vesca	FvH4_3g30730 FvH4_3g30731 FvH4_3g30740
malus_domestica	MD03G1127000.v1.1 MD11G1147600.v1.1
prunus_persica	Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0056931
rosa_laevigata	RLG00000035140
rosa_multiflora	Rmu_sc0002035.1_g000008
rosa_roxburghii	Rroxscaffold_1G00023260 Rroxscaffold_1G00059860
rosa_rugosa	Rorug05G0304400
rosa_samantha	Rh5AG373800 Rh5BG384800 Rh5CG408100
rosa_wichuraiana	Rw5G035180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1164
Acc36I	ACCTGC	3 cut(s)	1142, 1257, 2122
Acc65I	GGTACC	1 cut(s)	1726
AccB1I	GGYRCC	4 cut(s)	196, 202, 1726, 1775
AccBSI	CCGCTC	1 cut(s)	241
AccI	GTMKAC	2 cut(s)	978, 2147
AccII	CGCG	5 cut(s)	54, 143, 217, 219, 221
AclI	AACGTT	1 cut(s)	1870
AclWI	GGATC	3 cut(s)	127, 799, 995
AcoI	YGGCCR	1 cut(s)	858
AcsI	RAATTY	3 cut(s)	915, 1341, 1814
AcuI	CTGAAG	4 cut(s)	296, 800, 909, 1872
AcyI	GRCGYC	3 cut(s)	183, 203, 1776
AfaI	GTAC	5 cut(s)	962, 1107, 1359, 1728, 1762
AfeI	AGCGCT	1 cut(s)	593
AfiI	CCNNNNNNNGG	6 cut(s)	142, 715, 760, 1088, 1089, 1750
AflIII	ACRYGT	1 cut(s)	1034
AgsI	TTSAA	9 cut(s)	694, 1029, 1507, 1599, 1656, 1684, 1820, 1865, 1967
AhdI	GACNNNNNGTC	1 cut(s)	2010
AjnI	CCWGG	2 cut(s)	735, 1353
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
Alw21I	GWGCWC	1 cut(s)	519
Alw26I	GTCTC	2 cut(s)	603, 927
AlwI	GGATC	3 cut(s)	127, 799, 995
Ama87I	CYCGRG	2 cut(s)	301, 1368
Aor51HI	AGCGCT	1 cut(s)	593
AoxI	GGCC	3 cut(s)	87, 858, 1879
ApeKI	GCWGC	8 cut(s)	271, 776, 875, 938, 1468, 1586, 1736, 2027
ApoI	RAATTY	3 cut(s)	915, 1341, 1814
Asp700I	GAANNNNTTC	1 cut(s)	1815
Asp718I	GGTACC	1 cut(s)	1726
AspS9I	GGNCC	2 cut(s)	88, 1064
AsuC2I	CCSGG	1 cut(s)	464
AsuHPI	GGTGA	2 cut(s)	175, 1999
AvaI	CYCGRG	2 cut(s)	301, 1368
AvaII	GGWCC	1 cut(s)	1064
BanI	GGYRCC	4 cut(s)	196, 202, 1726, 1775
BanII	GRGCYC	2 cut(s)	519, 1375
BarI	GAAGNNNNNNTAC	2 cut(s)	1676, 1708
BbsI	GAAGAC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	519
BbvCI	CCTCAGC	1 cut(s)	555
BbvI	GCAGC	8 cut(s)	258, 763, 862, 925, 1480, 1573, 1723, 2014
BccI	CCATC	2 cut(s)	1145, 1178
BceAI	ACGGC	3 cut(s)	261, 621, 1574
BciT130I	CCWGG	2 cut(s)	737, 1355
BciVI	GTATCC	2 cut(s)	1064, 1114
BcnI	CCSGG	1 cut(s)	464
BcoDI	GTCTC	2 cut(s)	603, 927
BfaI	CTAG	1 cut(s)	2203
BfmI	CTRYAG	3 cut(s)	876, 1918, 2028
BfoI	RGCGCY	4 cut(s)	206, 551, 595, 1779
BfuAI	ACCTGC	3 cut(s)	1142, 1257, 2122
BfuI	GTATCC	2 cut(s)	1064, 1114
Bme1390I	CCNGG	3 cut(s)	464, 737, 1355
Bme18I	GGWCC	1 cut(s)	1064
BmeRI	GACNNNNNGTC	1 cut(s)	2010
BmeT110I	CYCGRG	2 cut(s)	301, 1368
BmgT120I	GGNCC	2 cut(s)	88, 1064
BmiI	GGNNCC	6 cut(s)	90, 198, 204, 339, 1728, 1777
BmrFI	CCNGG	3 cut(s)	464, 737, 1355
BmrI	ACTGGG	4 cut(s)	875, 1052, 1077, 1965
BmsI	GCATC	5 cut(s)	589, 1398, 1573, 1627, 2035
BmuI	ACTGGG	4 cut(s)	875, 1052, 1077, 1965
BpiI	GAAGAC	1 cut(s)	186
BpmI	CTGGAG	2 cut(s)	1539, 1935
Bpu10I	CCTNAGC	2 cut(s)	555, 714
BpuEI	CTTGAG	1 cut(s)	159
BpuMI	CCSGG	1 cut(s)	464
BsaHI	GRCGYC	3 cut(s)	183, 203, 1776
BsaJI	CCNNGG	3 cut(s)	141, 206, 1744
BsaWI	WCCGGW	1 cut(s)	2107
BsaXI	ACNNNNNCTCC	2 cut(s)	892, 922
Bsc4I	CCNNNNNNNGG	6 cut(s)	142, 715, 760, 1088, 1089, 1750
Bse118I	RCCGGY	4 cut(s)	85, 185, 193, 199
Bse1I	ACTGG	8 cut(s)	870, 1058, 1083, 1231, 1676, 1722, 1846, 1971
BseBI	CCWGG	2 cut(s)	737, 1355
BseDI	CCNNGG	3 cut(s)	141, 206, 1744
BseGI	GGATG	4 cut(s)	586, 990, 1189, 2050
BseLI	CCNNNNNNNGG	6 cut(s)	142, 715, 760, 1088, 1089, 1750
BseMII	CTCAG	6 cut(s)	546, 995, 1089, 1596, 2118, 2130
BseNI	ACTGG	8 cut(s)	870, 1058, 1083, 1231, 1676, 1722, 1846, 1971
BsePI	GCGCGC	1 cut(s)	217
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	8 cut(s)	258, 763, 862, 925, 1480, 1573, 1723, 2014
BsgI	GTGCAG	1 cut(s)	327
Bsh1236I	CGCG	5 cut(s)	54, 143, 217, 219, 221
BshFI	GGCC	3 cut(s)	89, 860, 1881
BshNI	GGYRCC	4 cut(s)	196, 202, 1726, 1775
BsiHKAI	GWGCWC	1 cut(s)	519
BsiHKCI	CYCGRG	2 cut(s)	301, 1368
BsiSI	CCGG	9 cut(s)	45, 86, 186, 194, 200, 449, 464, 497, 2108
BslFI	GGGAC	3 cut(s)	542, 882, 1724
BslI	CCNNNNNNNGG	6 cut(s)	142, 715, 760, 1088, 1089, 1750
BsmAI	GTCTC	2 cut(s)	603, 927
BsmFI	GGGAC	3 cut(s)	542, 882, 1724
BsnI	GGCC	3 cut(s)	89, 860, 1881
BsoBI	CYCGRG	2 cut(s)	301, 1368
Bsp1286I	GDGCHC	2 cut(s)	519, 1375
Bsp1407I	TGTACA	1 cut(s)	1105
Bsp143I	GATC	3 cut(s)	132, 804, 987
Bsp19I	CCATGG	1 cut(s)	1744
BspANI	GGCC	3 cut(s)	89, 860, 1881
BspCNI	CTCAG	6 cut(s)	547, 996, 1090, 1597, 2119, 2131
BspFNI	CGCG	5 cut(s)	54, 143, 217, 219, 221
BspLI	GGNNCC	6 cut(s)	90, 198, 204, 339, 1728, 1777
BspMAI	CTGCAG	2 cut(s)	880, 2032
BspMI	ACCTGC	3 cut(s)	1142, 1257, 2122
BspPI	GGATC	3 cut(s)	127, 799, 995
BspT107I	GGYRCC	4 cut(s)	196, 202, 1726, 1775
BsrBI	CCGCTC	1 cut(s)	241
BsrFI	RCCGGY	4 cut(s)	85, 185, 193, 199
BsrGI	TGTACA	1 cut(s)	1105
BsrI	ACTGG	8 cut(s)	870, 1058, 1083, 1231, 1676, 1722, 1846, 1971
BssAI	RCCGGY	4 cut(s)	85, 185, 193, 199
BssECI	CCNNGG	3 cut(s)	141, 206, 1744
BssHII	GCGCGC	1 cut(s)	217
BssMI	GATC	3 cut(s)	132, 804, 987
BssNAI	GTATAC	1 cut(s)	2148
BssNI	GRCGYC	3 cut(s)	183, 203, 1776
BssT1I	CCWWGG	1 cut(s)	1744
Bst1107I	GTATAC	1 cut(s)	2148
Bst2UI	CCWGG	2 cut(s)	737, 1355
Bst4CI	ACNGT	6 cut(s)	163, 433, 679, 1205, 1307, 1328
Bst6I	CTCTTC	3 cut(s)	563, 927, 2070
BstACI	GRCGYC	3 cut(s)	183, 203, 1776
BstAUI	TGTACA	1 cut(s)	1105
BstDSI	CCRYGG	2 cut(s)	141, 1744
BstENI	CCTNNNNNAGG	1 cut(s)	713
BstF5I	GGATG	4 cut(s)	586, 990, 1189, 2050
BstFNI	CGCG	5 cut(s)	54, 143, 217, 219, 221
BstH2I	RGCGCY	4 cut(s)	206, 551, 595, 1779
BstKTI	GATC	3 cut(s)	135, 807, 990
BstMAI	GTCTC	2 cut(s)	603, 927
BstMBI	GATC	3 cut(s)	132, 804, 987
BstMWI	GCNNNNNNNGC	8 cut(s)	56, 62, 225, 230, 1078, 1657, 1800, 1836
BstNI	CCWGG	2 cut(s)	737, 1355
BstNSI	RCATGY	1 cut(s)	1038
BstSCI	CCNGG	3 cut(s)	462, 735, 1353
BstSFI	CTRYAG	3 cut(s)	876, 1918, 2028
BstUI	CGCG	5 cut(s)	54, 143, 217, 219, 221
BstV1I	GCAGC	8 cut(s)	258, 763, 862, 925, 1480, 1573, 1723, 2014
BstV2I	GAAGAC	1 cut(s)	186
BstXI	CCANNNNNNTGG	1 cut(s)	1959
BstZ17I	GTATAC	1 cut(s)	2148
BsuI	GTATCC	2 cut(s)	1064, 1114
BsuRI	GGCC	3 cut(s)	89, 860, 1881
BtgI	CCRYGG	2 cut(s)	141, 1744
BtsCI	GGATG	4 cut(s)	586, 990, 1189, 2050
BtsI	GCAGTG	2 cut(s)	315, 1260
BtsIMutI	CAGTG	7 cut(s)	315, 863, 1224, 1260, 1664, 1715, 1839
BveI	ACCTGC	3 cut(s)	1142, 1257, 2122
Cfr10I	RCCGGY	4 cut(s)	85, 185, 193, 199
Cfr13I	GGNCC	2 cut(s)	88, 1064
Cfr42I	CCGCGG	1 cut(s)	144
CseI	GACGC	2 cut(s)	191, 539
Csp6I	GTAC	5 cut(s)	961, 1106, 1358, 1727, 1761
CviAII	CATG	6 cut(s)	40, 503, 1035, 1177, 1696, 1745
CviQI	GTAC	5 cut(s)	961, 1106, 1358, 1727, 1761
DinI	GGCGCC	2 cut(s)	204, 1777
DpnI	GATC	3 cut(s)	134, 806, 989
DpnII	GATC	3 cut(s)	132, 804, 987
DriI	GACNNNNNGTC	1 cut(s)	2010
EaeI	YGGCCR	1 cut(s)	858
Eam1104I	CTCTTC	3 cut(s)	563, 927, 2070
Eam1105I	GACNNNNNGTC	1 cut(s)	2010
EarI	CTCTTC	3 cut(s)	563, 927, 2070
EciI	GGCGGA	1 cut(s)	13
Ecl136II	GAGCTC	1 cut(s)	517
Eco130I	CCWWGG	1 cut(s)	1744
Eco24I	GRGCYC	2 cut(s)	519, 1375
Eco47I	GGWCC	1 cut(s)	1064
Eco47III	AGCGCT	1 cut(s)	593
Eco53kI	GAGCTC	1 cut(s)	517
Eco57I	CTGAAG	4 cut(s)	296, 800, 909, 1872
Eco88I	CYCGRG	2 cut(s)	301, 1368
EcoICRI	GAGCTC	1 cut(s)	517
EcoNI	CCTNNNNNAGG	1 cut(s)	713
EcoRII	CCWGG	2 cut(s)	735, 1353
EcoT14I	CCWWGG	1 cut(s)	1744
EcoT38I	GRGCYC	2 cut(s)	519, 1375
EgeI	GGCGCC	2 cut(s)	204, 1777
EheI	GGCGCC	2 cut(s)	204, 1777
ErhI	CCWWGG	1 cut(s)	1744
FaeI	CATG	6 cut(s)	43, 506, 1038, 1180, 1699, 1748
FalI	AAGNNNNNCTT	2 cut(s)	1845, 1877
FaqI	GGGAC	3 cut(s)	542, 882, 1724
FatI	CATG	6 cut(s)	39, 502, 1034, 1176, 1695, 1744
FauI	CCCGC	1 cut(s)	145
FauNDI	CATATG	3 cut(s)	756, 1645, 1826
FblI	GTMKAC	2 cut(s)	978, 2147
FokI	GGATG	4 cut(s)	593, 977, 1196, 2057
FriOI	GRGCYC	2 cut(s)	519, 1375
FspBI	CTAG	1 cut(s)	2203
FspI	TGCGCA	1 cut(s)	1164
GsuI	CTGGAG	2 cut(s)	1539, 1935
HaeII	RGCGCY	4 cut(s)	206, 551, 595, 1779
HaeIII	GGCC	3 cut(s)	89, 860, 1881
HapII	CCGG	9 cut(s)	45, 86, 186, 194, 200, 449, 464, 497, 2108
HgaI	GACGC	2 cut(s)	191, 539
Hin1I	GRCGYC	3 cut(s)	183, 203, 1776
Hin1II	CATG	6 cut(s)	43, 506, 1038, 1180, 1699, 1748
HincII	GTYRAC	1 cut(s)	1451
HindII	GTYRAC	1 cut(s)	1451
HindIII	AAGCTT	1 cut(s)	2115
HinfI	GANTC	6 cut(s)	146, 259, 719, 1021, 1499, 1712
HpaII	CCGG	9 cut(s)	45, 86, 186, 194, 200, 449, 464, 497, 2108
HphI	GGTGA	2 cut(s)	175, 1999
Hpy166II	GTNNAC	5 cut(s)	641, 961, 979, 1451, 2148
Hpy188I	TCNGA	9 cut(s)	112, 132, 264, 889, 1005, 1099, 1606, 1852, 2128
Hpy188III	TCNNGA	5 cut(s)	176, 911, 1118, 1580, 1952
Hpy8I	GTNNAC	5 cut(s)	641, 961, 979, 1451, 2148
Hpy99I	CGWCG	1 cut(s)	116
HpyCH4III	ACNGT	6 cut(s)	163, 433, 679, 1205, 1307, 1328
HpyCH4IV	ACGT	3 cut(s)	1159, 1759, 1870
HpyF10VI	GCNNNNNNNGC	8 cut(s)	56, 62, 225, 230, 1078, 1657, 1800, 1836
HpySE526I	ACGT	3 cut(s)	1159, 1759, 1870
Hsp92I	GRCGYC	3 cut(s)	183, 203, 1776
Hsp92II	CATG	6 cut(s)	43, 506, 1038, 1180, 1699, 1748
KasI	GGCGCC	2 cut(s)	202, 1775
KpnI	GGTACC	1 cut(s)	1730
KroI	GCCGGC	2 cut(s)	185, 193
KroNI	GCCGGC	2 cut(s)	187, 195
KspI	CCGCGG	1 cut(s)	144
Kzo9I	GATC	3 cut(s)	132, 804, 987
LmnI	GCTCC	4 cut(s)	238, 465, 499, 514
Lsp1109I	GCAGC	8 cut(s)	258, 763, 862, 925, 1480, 1573, 1723, 2014
LweI	GCATC	5 cut(s)	589, 1398, 1573, 1627, 2035
MaeI	CTAG	1 cut(s)	2203
MaeII	ACGT	3 cut(s)	1159, 1759, 1870
MaeIII	GTNAC	2 cut(s)	679, 1662
MalI	GATC	3 cut(s)	134, 806, 989
MauBI	CGCGCGCG	1 cut(s)	217
MbiI	CCGCTC	1 cut(s)	241
MboI	GATC	3 cut(s)	132, 804, 987
MfeI	CAATTG	1 cut(s)	251
MhlI	GDGCHC	2 cut(s)	519, 1375
MluCI	AATT	9 cut(s)	251, 316, 831, 915, 1310, 1341, 1594, 1679, 1814
Mly113I	GGCGCC	2 cut(s)	203, 1776
MlyI	GAGTC	3 cut(s)	268, 1493, 1706
MmeI	TCCRAC	4 cut(s)	135, 242, 270, 1042
MroNI	GCCGGC	2 cut(s)	185, 193
MroXI	GAANNNNTTC	1 cut(s)	1815
MseI	TTAA	7 cut(s)	585, 951, 1271, 1401, 1593, 1613, 1628
MslI	CAYNNNNRTG	1 cut(s)	2181
MspA1I	CMGCKG	3 cut(s)	143, 782, 1997
MspI	CCGG	9 cut(s)	45, 86, 186, 194, 200, 449, 464, 497, 2108
MspR9I	CCNGG	3 cut(s)	464, 737, 1355
MunI	CAATTG	1 cut(s)	251
MvaI	CCWGG	2 cut(s)	737, 1355
MvnI	CGCG	5 cut(s)	54, 143, 217, 219, 221
MwoI	GCNNNNNNNGC	8 cut(s)	56, 62, 225, 230, 1078, 1657, 1800, 1836
NaeI	GCCGGC	2 cut(s)	187, 195
NarI	GGCGCC	2 cut(s)	203, 1776
NciI	CCSGG	1 cut(s)	464
NcoI	CCATGG	1 cut(s)	1744
NdeI	CATATG	3 cut(s)	756, 1645, 1826
NdeII	GATC	3 cut(s)	132, 804, 987
NgoMIV	GCCGGC	2 cut(s)	185, 193
NlaIII	CATG	6 cut(s)	43, 506, 1038, 1180, 1699, 1748
NlaIV	GGNNCC	6 cut(s)	90, 198, 204, 339, 1728, 1777
NmeAIII	GCCGAG	3 cut(s)	231, 458, 498
NmuCI	GTSAC	2 cut(s)	679, 1662
NsbI	TGCGCA	1 cut(s)	1164
NspI	RCATGY	1 cut(s)	1038
PaeR7I	CTCGAG	1 cut(s)	1368
PauI	GCGCGC	1 cut(s)	217
PciI	ACATGT	1 cut(s)	1034
PcsI	WCGNNNNNNNCGW	2 cut(s)	1756, 2083
PdiI	GCCGGC	2 cut(s)	187, 195
PdmI	GAANNNNTTC	1 cut(s)	1815
PfeI	GAWTC	3 cut(s)	146, 719, 1021
PleI	GAGTC	3 cut(s)	267, 1493, 1706
PluTI	GGCGCC	2 cut(s)	206, 1779
PpsI	GAGTC	3 cut(s)	267, 1493, 1706
PscI	ACATGT	1 cut(s)	1034
Psp124BI	GAGCTC	1 cut(s)	519
Psp1406I	AACGTT	1 cut(s)	1870
Psp6I	CCWGG	2 cut(s)	735, 1353
PspGI	CCWGG	2 cut(s)	735, 1353
PspN4I	GGNNCC	6 cut(s)	90, 198, 204, 339, 1728, 1777
PspPI	GGNCC	2 cut(s)	88, 1064
PspXI	VCTCGAGB	1 cut(s)	1368
PstI	CTGCAG	2 cut(s)	880, 2032
PteI	GCGCGC	1 cut(s)	217
RsaI	GTAC	5 cut(s)	962, 1107, 1359, 1728, 1762
RsaNI	GTAC	5 cut(s)	961, 1106, 1358, 1727, 1761
RseI	CAYNNNNRTG	1 cut(s)	2181
SacI	GAGCTC	1 cut(s)	519
SacII	CCGCGG	1 cut(s)	144
SaqAI	TTAA	7 cut(s)	585, 951, 1271, 1401, 1593, 1613, 1628
Sau3AI	GATC	3 cut(s)	132, 804, 987
Sau96I	GGNCC	2 cut(s)	88, 1064
SchI	GAGTC	3 cut(s)	268, 1493, 1706
ScrFI	CCNGG	3 cut(s)	464, 737, 1355
SduI	GDGCHC	2 cut(s)	519, 1375
SfaNI	GCATC	5 cut(s)	589, 1398, 1573, 1627, 2035
SfcI	CTRYAG	3 cut(s)	876, 1918, 2028
SfoI	GGCGCC	2 cut(s)	204, 1777
Sfr274I	CTCGAG	1 cut(s)	1368
Sfr303I	CCGCGG	1 cut(s)	144
SgrAI	CRCCGGYG	1 cut(s)	199
SgrBI	CCGCGG	1 cut(s)	144
SinI	GGWCC	1 cut(s)	1064
SlaI	CTCGAG	1 cut(s)	1368
SmiMI	CAYNNNNRTG	1 cut(s)	2181
SmlI	CTYRAG	2 cut(s)	174, 1368
SmoI	CTYRAG	2 cut(s)	174, 1368
Sse9I	AATT	9 cut(s)	251, 316, 831, 915, 1310, 1341, 1594, 1679, 1814
SspDI	GGCGCC	2 cut(s)	202, 1775
SspMI	CTAG	1 cut(s)	2203
SstI	GAGCTC	1 cut(s)	519
StyD4I	CCNGG	3 cut(s)	462, 735, 1353
StyI	CCWWGG	1 cut(s)	1744
TaaI	ACNGT	6 cut(s)	163, 433, 679, 1205, 1307, 1328
TaiI	ACGT	3 cut(s)	1162, 1762, 1873
TaqI	TCGA	6 cut(s)	30, 536, 821, 1207, 1369, 2068
TasI	AATT	9 cut(s)	251, 316, 831, 915, 1310, 1341, 1594, 1679, 1814
TatI	WGTACW	2 cut(s)	960, 1105
TauI	GCSGC	8 cut(s)	59, 62, 65, 143, 224, 782, 863, 1997
TfiI	GAWTC	3 cut(s)	146, 719, 1021
Tru1I	TTAA	7 cut(s)	585, 951, 1271, 1401, 1593, 1613, 1628
Tru9I	TTAA	7 cut(s)	585, 951, 1271, 1401, 1593, 1613, 1628
TscAI	CASTG	7 cut(s)	315, 870, 1231, 1260, 1671, 1722, 1846
TseFI	GTSAC	2 cut(s)	679, 1662
TseI	GCWGC	8 cut(s)	271, 776, 875, 938, 1468, 1586, 1736, 2027
Tsp45I	GTSAC	2 cut(s)	679, 1662
TspDTI	ATGAA	5 cut(s)	519, 773, 1578, 1824, 2109
TspGWI	ACGGA	4 cut(s)	330, 419, 797, 1234
TspRI	CASTG	7 cut(s)	315, 870, 1231, 1260, 1671, 1722, 1846
VpaK11BI	GGWCC	1 cut(s)	1064
XagI	CCTNNNNNAGG	1 cut(s)	713
XapI	RAATTY	3 cut(s)	915, 1341, 1814
XceI	RCATGY	1 cut(s)	1038
XhoI	CTCGAG	1 cut(s)	1368
XmiI	GTMKAC	2 cut(s)	978, 2147
XmnI	GAANNNNTTC	1 cut(s)	1815
XspI	CTAG	1 cut(s)	2203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.