DNA ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G08130 |
| fragaria_vesca | FvH4_3g30730 FvH4_3g30731 FvH4_3g30740 |
| malus_domestica | MD03G1127000.v1.1 MD11G1147600.v1.1 |
| prunus_persica | Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr5g0056931 |
| rosa_laevigata | RLG00000035140 |
| rosa_multiflora | Rmu_sc0002035.1_g000008 |
| rosa_roxburghii | Rroxscaffold_1G00023260 Rroxscaffold_1G00059860 |
| rosa_rugosa | Rorug05G0304400 |
| rosa_samantha | Rh5AG373800 Rh5BG384800 Rh5CG408100 |
| rosa_wichuraiana | Rw5G035180 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 229 |
| Acc36I | ACCTGC | 1 cut(s) | 229 |
| AciI | CCGC | 1 cut(s) | 231 |
| AfaI | GTAC | 1 cut(s) | 10 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 194, 227 |
| AluBI | AGCT | 4 cut(s) | 108, 119, 154, 227 |
| AluI | AGCT | 4 cut(s) | 108, 119, 154, 227 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 209, 251 |
| ApeKI | GCWGC | 4 cut(s) | 38, 215, 224, 245 |
| BbvCI | CCTCAGC | 1 cut(s) | 120 |
| BbvI | GCAGC | 4 cut(s) | 25, 202, 236, 257 |
| BfmI | CTRYAG | 1 cut(s) | 222 |
| BfuAI | ACCTGC | 1 cut(s) | 229 |
| BisI | GCNGC | 4 cut(s) | 39, 216, 225, 246 |
| BlsI | GCNGC | 4 cut(s) | 40, 217, 226, 247 |
| BmsI | GCATC | 1 cut(s) | 170 |
| Bpu10I | CCTNAGC | 1 cut(s) | 120 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 194, 227 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 194, 227 |
| BseMII | CTCAG | 3 cut(s) | 111, 123, 141 |
| BseXI | GCAGC | 4 cut(s) | 25, 202, 236, 257 |
| BsgI | GTGCAG | 2 cut(s) | 201, 222 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 194, 227 |
| BspACI | CCGC | 1 cut(s) | 231 |
| BspCNI | CTCAG | 3 cut(s) | 112, 122, 142 |
| BspMAI | CTGCAG | 1 cut(s) | 226 |
| BspMI | ACCTGC | 1 cut(s) | 229 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 251 |
| BstC8I | GCNNGC | 1 cut(s) | 229 |
| BstDEI | CTNAG | 5 cut(s) | 104, 109, 120, 150, 261 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 215, 221, 224, 251 |
| BstSFI | CTRYAG | 1 cut(s) | 222 |
| BstV1I | GCAGC | 4 cut(s) | 25, 202, 236, 257 |
| BtsIMutI | CAGTG | 1 cut(s) | 147 |
| BveI | ACCTGC | 1 cut(s) | 229 |
| Cac8I | GCNNGC | 1 cut(s) | 229 |
| CaiI | CAGNNNCTG | 2 cut(s) | 209, 251 |
| Csp6I | GTAC | 1 cut(s) | 9 |
| CviAII | CATG | 1 cut(s) | 6 |
| CviQI | GTAC | 1 cut(s) | 9 |
| DdeI | CTNAG | 5 cut(s) | 104, 109, 120, 150, 261 |
| Eco32I | GATATC | 1 cut(s) | 145 |
| EcoRV | GATATC | 1 cut(s) | 145 |
| FaeI | CATG | 1 cut(s) | 9 |
| FaiI | YATR | 3 cut(s) | 7, 15, 43 |
| FatI | CATG | 1 cut(s) | 5 |
| Fnu4HI | GCNGC | 4 cut(s) | 39, 216, 225, 246 |
| Fsp4HI | GCNGC | 4 cut(s) | 39, 216, 225, 246 |
| GluI | GCNGC | 4 cut(s) | 39, 216, 225, 246 |
| Hin1II | CATG | 1 cut(s) | 9 |
| Hpy188I | TCNGA | 1 cut(s) | 85 |
| Hpy188III | TCNNGA | 1 cut(s) | 165 |
| HpyAV | CCTTC | 2 cut(s) | 22, 162 |
| HpyCH4V | TGCA | 5 cut(s) | 41, 161, 203, 218, 224 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 215, 221, 224, 251 |
| HpyF3I | CTNAG | 5 cut(s) | 104, 109, 120, 150, 261 |
| Hsp92II | CATG | 1 cut(s) | 9 |
| LmnI | GCTCC | 2 cut(s) | 116, 242 |
| LpnPI | CCDG | 6 cut(s) | 35, 85, 150, 177, 213, 234 |
| Lsp1109I | GCAGC | 4 cut(s) | 25, 202, 236, 257 |
| LweI | GCATC | 1 cut(s) | 170 |
| MboII | GAAGA | 2 cut(s) | 38, 106 |
| MluCI | AATT | 1 cut(s) | 156 |
| MmeI | TCCRAC | 1 cut(s) | 94 |
| MnlI | CCTC | 4 cut(s) | 56, 88, 115, 199 |
| MspA1I | CMGCKG | 1 cut(s) | 227 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 215, 221, 224, 251 |
| NlaIII | CATG | 1 cut(s) | 9 |
| PaqCI | CACCTGC | 1 cut(s) | 229 |
| PkrI | GCNGC | 4 cut(s) | 40, 217, 226, 247 |
| PstI | CTGCAG | 1 cut(s) | 226 |
| PstNI | CAGNNNCTG | 2 cut(s) | 209, 251 |
| PvuII | CAGCTG | 1 cut(s) | 227 |
| RsaI | GTAC | 1 cut(s) | 10 |
| RsaNI | GTAC | 1 cut(s) | 9 |
| SatI | GCNGC | 4 cut(s) | 39, 216, 225, 246 |
| SetI | ASST | 7 cut(s) | 14, 33, 110, 121, 156, 223, 229 |
| SfaNI | GCATC | 1 cut(s) | 170 |
| SfcI | CTRYAG | 1 cut(s) | 222 |
| SgeI | CNNG | 7 cut(s) | 18, 62, 84, 177, 204, 233, 240 |
| Sse9I | AATT | 1 cut(s) | 156 |
| SsiI | CCGC | 1 cut(s) | 231 |
| SspI | AATATT | 1 cut(s) | 100 |
| TasI | AATT | 1 cut(s) | 156 |
| TscAI | CASTG | 1 cut(s) | 154 |
| TseI | GCWGC | 4 cut(s) | 38, 215, 224, 245 |
| TspDTI | ATGAA | 1 cut(s) | 41 |
| TspRI | CASTG | 1 cut(s) | 154 |