Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010089

Physical Location & Seq

Genomic Coordinates Forward (+)

61532816 .. 61540322

Gene Structure 7507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035140

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2265 bp

ATGTCCTCCAATCGCCCCTCCGCCTTCGACGCGCTCATGTCCGGCGCACGCGCCGCCGCCGCCGCCAAGAAAAAGCCCCAACCCTCTTCCTCCCCCAAGAAGCGCAAAACCCTAAACCCTAGCCCTAGCTCCAATTCCGCGCCTAAGGAAAATCCCCAATTGCTATCCAAACCCGAAGACGCTGATCCGAGCCCGGCCCCGGAATCCAAACCAGAAATGGAGGAAGAAGGTCAAGAACAGTCTGGCAACGGCGCCGAGCTGGCACCGACGGCGAAGAAAGTGTGCGCGGCGGCCGGAGTGGAGGAGCGGACGGCTCAATTGGCGAGTAGAATTGAGCTGTTGAAGAAGAAGGCCTTGGATTTTGACCCGAAGCTGATGGCGAATTGGGACAAGGGCGAAAGGGTTCCGTTTATGTTTCTTTCTTTGGTTTTCAATTTGATTTCCAAAGAGTCTGGGCGGATTGTGATTACGGATATAGTATGTAATATGCTTAGGACTGTAATCTACACCACGCCGGAGGATTTGCTCCCGGTGGTTTATCTCTCGGCCAATAAGATTGCTCCGGCGCATGAGGGATTGGAGCTTGGCATTGGGGACTCTTCGATTATCAAGGCGCTTTCGCAGGCTTGTGGGAGGAGTGAAAAGGATGTTAAGAAGCGCTATGATGCAGAAGGAGACTTGGGTATTGTTGCACAGAAAAGCCGTTCATCCCAAACTATGATGCGCAAGCCTGAGCCACTGACTGTCAGCAAGGTTTTCAACACATTTCGCACCCTTGCTAAGGAATCTGGGAAGGATAGCCAGGAGAAGAAAAAGAACCATATGAAGGCACTTCTTGTTGCTGCCACTGACTGTGAACCTCTGTATTTGATCCGTTTGCTTCAGTCGAAGTTGCGAATTGGATTGGCAGAGCAGACTCTTTTGGCTGCACTGGGACAAGCTGTAGTCTATACTGAAGAACATTCTAAACCACCTCCTGAAATTCAGTCTCCTTTAGAAGAGGCTGCAAAGATTGTTAAACAAGTGTACTCTCTGCTTCCTGTTTACGATAAGATCATCCCTGCCCTTCTGAGTGGTGGTGTTTGGAATCTTCCAAAAACGTGTAGCTTTACTTTGGGTATCCCAGTTGGACCTATGCTTGCAAAGCCAAGTAAAGGGGTATCTGAGATTGTCCAAAAGTTTCAGGATACAGAATACACCTGTGAATACAAGTATGATGGAGAGCGTGCCCAGATACATTACATGGAGGATGGTACTGTTGAGATATACAGTCGAAATGCTGAACGAAACACTGGAAAGTTCCCTGATGTTGCGATTGCAGTGTCAAGGTTAAAGAAGTCGTCTGTAAAATCATTTGTTTTAGATTGTGAATTGGTTGCCTATGACCGTGCAAATAACAAAATTCTGCCCTTCCAGGTACTTAGCACCCGAGCCCGTAAAAATGTGAGCATGAGCGATATTAAGATTGAGGTCTGCATATTTGCTTTTGATATGTTGTTTCTTAATGGTCGACCACTTACTCAAGAACAGCTCAAAGTTCGCAGAGAGTATCTTTATGACTCTTTTGACGAAGAAGCTGGAATTTTTCAGTTTGCCACAGCAATAACCTCAAAGGATATTGATGAAATACAAACGTTTCTTGATGCCGCTGTTAATTCAAGTTCTGAGGGTTTAATAATCAAAACATTAAGCAAAGATGCTACATATGAGCCTTCGAAGCGGTCACTTAACTGGCTGAAATTGAAGAAAGATTACATGGATAGTTTCGGGGACTCACTGGACTTGGTACCTATTGCTGCTTTCCATGGCCGGGGAAAACGTACAGGTGTCTATGGTGCTTTTCTCCTTGCTTGCTACGATAGCAATAACGAAGAGTTTCAAAGCATATGTAAAATAGGCACTGGATTTTCTGAAGCAGTGCTTGAAGAGCGTTCTGCCAGCCTGCGCGAAACAGTGATACCTAAACCTAAGACATACTATAGCTATGCAGAAACAAGTAATGCAAATACTCCAGATGTATGGTTTGAACCCACTCAGGTTTGGGAGGTGAAAGCTGCTGACTTGACTATTAGTCCTGTGTATCGTGCTGCAGTAGGCATAGTGGATTCTAATAAGGGTATTTCTCTTCGATTTCCACGTCTTGTTCGTGTTAGGGAAGATAAAAAACCAGAGGAAGCTTCATCATCTGAGCAGGTTGCTGATATGTATTCTGCTCAATCCAACAAAAGTTCTAACCACCAAGATGACAAGGAAGATGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000012 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006302 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016874 GO:0016886 GO:0022616 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0070013 GO:0070988 GO:0071704 GO:0080111 GO:0090304 GO:0140097 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03030 ko03410 ko03420 ko03430 map03030 map03410 map03420 map03430

Pfam Domains

Protein Families

DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_A_N

Protein Analysis

755

Amino Acids

83.46

Weight (kDa)

6.45

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_ligase_A_N	PF04675	136 - 311	3.2e-51	DNA ligase N terminus
DNA_ligase_A_M	PF01068	378 - 582	3.5e-65	ATP dependent DNA ligase domain
DNA_ligase_A_C	PF04679	607 - 721	1.4e-22	ATP dependent DNA ligase C terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08130
fragaria_vesca	FvH4_3g30730 FvH4_3g30731 FvH4_3g30740
malus_domestica	MD03G1127000.v1.1 MD11G1147600.v1.1
prunus_persica	Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0056931
rosa_laevigata	RLG00000035140
rosa_multiflora	Rmu_sc0002035.1_g000008
rosa_roxburghii	Rroxscaffold_1G00023260 Rroxscaffold_1G00059860
rosa_rugosa	Rorug05G0304400
rosa_samantha	Rh5AG373800 Rh5BG384800 Rh5CG408100
rosa_wichuraiana	Rw5G035180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	725
Acc36I	ACCTGC	1 cut(s)	2182
Acc65I	GGTACC	1 cut(s)	1786
AccB1I	GGYRCC	3 cut(s)	251, 262, 1786
AccBSI	CCGCTC	1 cut(s)	307
AccI	GTMKAC	1 cut(s)	1510
AccII	CGCG	5 cut(s)	32, 51, 140, 287, 1947
AclI	AACGTT	1 cut(s)	1634
AclWI	GGATC	2 cut(s)	179, 865
AcoI	YGGCCR	3 cut(s)	291, 546, 1807
AcsI	RAATTY	3 cut(s)	981, 1401, 1581
AcuI	CTGAAG	3 cut(s)	866, 975, 1932
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	5 cut(s)	1028, 1255, 1419, 1788, 1822
AfeI	AGCGCT	1 cut(s)	659
AfiI	CCNNNNNNNGG	5 cut(s)	199, 781, 826, 1154, 1810
AflIII	ACRYGT	1 cut(s)	1100
AgsI	TTSAA	8 cut(s)	343, 433, 760, 1659, 1744, 1880, 1925, 2027
AhdI	GACNNNNNGTC	1 cut(s)	2070
AjiI	CACGTC	1 cut(s)	2138
AjnI	CCWGG	2 cut(s)	801, 1413
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
Alw26I	GTCTC	2 cut(s)	669, 993
AlwI	GGATC	2 cut(s)	179, 865
Ama87I	CYCGRG	1 cut(s)	1428
Aor51HI	AGCGCT	1 cut(s)	659
AoxI	GGCC	5 cut(s)	195, 291, 351, 546, 1807
ApeKI	GCWGC	6 cut(s)	842, 926, 1004, 1796, 2054, 2087
ApoI	RAATTY	3 cut(s)	981, 1401, 1581
Asp700I	GAANNNNTTC	2 cut(s)	402, 1875
Asp718I	GGTACC	1 cut(s)	1786
AspS9I	GGNCC	2 cut(s)	196, 1130
AsuC2I	CCSGG	4 cut(s)	194, 200, 530, 1811
AsuHPI	GGTGA	1 cut(s)	2059
AsuII	TTCGAA	1 cut(s)	1715
AvaI	CYCGRG	1 cut(s)	1428
AvaII	GGWCC	1 cut(s)	1130
AxyI	CCTNAGG	1 cut(s)	144
BaeGI	GKGCMC	1 cut(s)	1231
BanI	GGYRCC	3 cut(s)	251, 262, 1786
BanII	GRGCYC	2 cut(s)	194, 1435
BarI	GAAGNNNNNNTAC	2 cut(s)	1736, 1768
BbsI	GAAGAC	1 cut(s)	183
BbvI	GCAGC	6 cut(s)	829, 913, 991, 1783, 2041, 2074
BccI	CCATC	3 cut(s)	370, 1211, 1244
BceAI	ACGGC	4 cut(s)	265, 285, 327, 687
BciT130I	CCWGG	2 cut(s)	803, 1415
BciVI	GTATCC	2 cut(s)	1130, 1180
BcnI	CCSGG	4 cut(s)	194, 200, 530, 1811
BcoDI	GTCTC	2 cut(s)	669, 993
BfaI	CTAG	3 cut(s)	120, 126, 2263
BfmI	CTRYAG	3 cut(s)	942, 1978, 2088
BfoI	RGCGCY	3 cut(s)	255, 617, 661
BfuAI	ACCTGC	1 cut(s)	2182
BfuI	GTATCC	2 cut(s)	1130, 1180
BglI	GCCNNNNNGGC	1 cut(s)	260
Bme1390I	CCNGG	6 cut(s)	194, 200, 530, 803, 1415, 1811
Bme18I	GGWCC	1 cut(s)	1130
BmeRI	GACNNNNNGTC	1 cut(s)	2070
BmeT110I	CYCGRG	1 cut(s)	1428
BmgBI	CACGTC	1 cut(s)	2138
BmgT120I	GGNCC	2 cut(s)	196, 1130
BmiI	GGNNCC	5 cut(s)	198, 253, 264, 405, 1788
BmrFI	CCNGG	6 cut(s)	194, 200, 530, 803, 1415, 1811
BmrI	ACTGGG	2 cut(s)	941, 1118
BmsI	GCATC	4 cut(s)	655, 711, 1633, 1687
BmuI	ACTGGG	2 cut(s)	941, 1118
BpiI	GAAGAC	1 cut(s)	183
BpmI	CTGGAG	1 cut(s)	1995
Bpu10I	CCTNAGC	3 cut(s)	491, 732, 780
Bpu14I	TTCGAA	1 cut(s)	1715
BpuEI	CTTGAG	1 cut(s)	1506
BpuMI	CCSGG	4 cut(s)	194, 200, 530, 1811
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	4 cut(s)	198, 354, 1804, 1810
Bsc4I	CCNNNNNNNGG	5 cut(s)	199, 781, 826, 1154, 1810
Bse1I	ACTGG	6 cut(s)	936, 1124, 1297, 1736, 1782, 1906
Bse21I	CCTNAGG	1 cut(s)	144
BseBI	CCWGG	2 cut(s)	803, 1415
BseDI	CCNNGG	4 cut(s)	198, 354, 1804, 1810
BseGI	GGATG	4 cut(s)	652, 707, 1056, 1255
BseLI	CCNNNNNNNGG	5 cut(s)	199, 781, 826, 1154, 1810
BseMII	CTCAG	6 cut(s)	723, 1061, 1155, 1656, 2048, 2178
BseNI	ACTGG	6 cut(s)	936, 1124, 1297, 1736, 1782, 1906
BseRI	GAGGAG	2 cut(s)	317, 649
BseSI	GKGCMC	1 cut(s)	1231
BseX3I	CGGCCG	1 cut(s)	291
BseXI	GCAGC	6 cut(s)	829, 913, 991, 1783, 2041, 2074
BsgI	GTGCAG	1 cut(s)	912
Bsh1236I	CGCG	5 cut(s)	32, 51, 140, 287, 1947
Bsh1285I	CGRYCG	1 cut(s)	294
BshFI	GGCC	5 cut(s)	197, 293, 353, 548, 1809
BshNI	GGYRCC	3 cut(s)	251, 262, 1786
BsiEI	CGRYCG	1 cut(s)	294
BsiHKCI	CYCGRG	1 cut(s)	1428
BsiSI	CCGG	8 cut(s)	42, 194, 200, 294, 515, 530, 563, 1810
BslFI	GGGAC	4 cut(s)	401, 608, 948, 1784
BslI	CCNNNNNNNGG	5 cut(s)	199, 781, 826, 1154, 1810
BsmAI	GTCTC	2 cut(s)	669, 993
BsmFI	GGGAC	4 cut(s)	401, 608, 948, 1784
BsnI	GGCC	5 cut(s)	197, 293, 353, 548, 1809
BsoBI	CYCGRG	1 cut(s)	1428
Bsp119I	TTCGAA	1 cut(s)	1715
Bsp1286I	GDGCHC	3 cut(s)	194, 1231, 1435
Bsp143I	GATC	3 cut(s)	184, 870, 1053
Bsp19I	CCATGG	1 cut(s)	1804
BspANI	GGCC	5 cut(s)	197, 293, 353, 548, 1809
BspCNI	CTCAG	6 cut(s)	724, 1062, 1156, 1657, 2047, 2179
BspFNI	CGCG	5 cut(s)	32, 51, 140, 287, 1947
BspLI	GGNNCC	5 cut(s)	198, 253, 264, 405, 1788
BspMAI	CTGCAG	1 cut(s)	2092
BspMI	ACCTGC	1 cut(s)	2182
BspPI	GGATC	2 cut(s)	179, 865
BspQI	GCTCTTC	1 cut(s)	1920
BspT104I	TTCGAA	1 cut(s)	1715
BspT107I	GGYRCC	3 cut(s)	251, 262, 1786
BsrBI	CCGCTC	1 cut(s)	307
BsrI	ACTGG	6 cut(s)	936, 1124, 1297, 1736, 1782, 1906
BssECI	CCNNGG	4 cut(s)	198, 354, 1804, 1810
BssMI	GATC	3 cut(s)	184, 870, 1053
BssNI	GRCGYC	1 cut(s)	252
BssT1I	CCWWGG	2 cut(s)	354, 1804
Bst2UI	CCWGG	2 cut(s)	803, 1415
Bst4CI	ACNGT	8 cut(s)	240, 499, 745, 854, 1258, 1271, 1388, 1954
Bst6I	CTCTTC	6 cut(s)	91, 604, 993, 1866, 1920, 2130
BstACI	GRCGYC	1 cut(s)	252
BstBI	TTCGAA	1 cut(s)	1715
BstC8I	GCNNGC	9 cut(s)	49, 261, 624, 728, 1140, 1227, 1852, 1939, 1943
BstDSI	CCRYGG	1 cut(s)	1804
BstENI	CCTNNNNNAGG	1 cut(s)	779
BstF5I	GGATG	4 cut(s)	652, 707, 1056, 1255
BstFNI	CGCG	5 cut(s)	32, 51, 140, 287, 1947
BstH2I	RGCGCY	3 cut(s)	255, 617, 661
BstKTI	GATC	3 cut(s)	187, 873, 1056
BstMAI	GTCTC	2 cut(s)	669, 993
BstMBI	GATC	3 cut(s)	184, 870, 1053
BstMCI	CGRYCG	1 cut(s)	294
BstNI	CCWGG	2 cut(s)	803, 1415
BstSCI	CCNGG	6 cut(s)	192, 198, 528, 801, 1413, 1809
BstSFI	CTRYAG	3 cut(s)	942, 1978, 2088
BstSLI	GKGCMC	1 cut(s)	1231
BstUI	CGCG	5 cut(s)	32, 51, 140, 287, 1947
BstV1I	GCAGC	6 cut(s)	829, 913, 991, 1783, 2041, 2074
BstV2I	GAAGAC	1 cut(s)	183
BstXI	CCANNNNNNTGG	1 cut(s)	2019
BstZI	CGGCCG	1 cut(s)	291
Bsu36I	CCTNAGG	1 cut(s)	144
BsuI	GTATCC	2 cut(s)	1130, 1180
BsuRI	GGCC	5 cut(s)	197, 293, 353, 548, 1809
BtgI	CCRYGG	1 cut(s)	1804
BtrI	CACGTC	1 cut(s)	2138
BtsCI	GGATG	4 cut(s)	652, 707, 1056, 1255
BtsI	GCAGTG	2 cut(s)	1326, 1923
BtsIMutI	CAGTG	9 cut(s)	737, 846, 929, 1290, 1326, 1775, 1899, 1923, 1959
BveI	ACCTGC	1 cut(s)	2182
Cac8I	GCNNGC	9 cut(s)	49, 261, 624, 728, 1140, 1227, 1852, 1939, 1943
Cfr13I	GGNCC	2 cut(s)	196, 1130
CseI	GACGC	2 cut(s)	38, 188
Csp6I	GTAC	5 cut(s)	1027, 1254, 1418, 1787, 1821
CviAII	CATG	6 cut(s)	37, 569, 1243, 1450, 1756, 1805
CviQI	GTAC	5 cut(s)	1027, 1254, 1418, 1787, 1821
DinI	GGCGCC	1 cut(s)	253
DpnI	GATC	3 cut(s)	186, 872, 1055
DpnII	GATC	3 cut(s)	184, 870, 1053
DriI	GACNNNNNGTC	1 cut(s)	2070
EaeI	YGGCCR	3 cut(s)	291, 546, 1807
EagI	CGGCCG	1 cut(s)	291
Eam1104I	CTCTTC	6 cut(s)	91, 604, 993, 1866, 1920, 2130
Eam1105I	GACNNNNNGTC	1 cut(s)	2070
EarI	CTCTTC	6 cut(s)	91, 604, 993, 1866, 1920, 2130
EciI	GGCGGA	2 cut(s)	10, 472
EclXI	CGGCCG	1 cut(s)	291
Eco130I	CCWWGG	2 cut(s)	354, 1804
Eco147I	AGGCCT	1 cut(s)	353
Eco24I	GRGCYC	2 cut(s)	194, 1435
Eco47I	GGWCC	1 cut(s)	1130
Eco47III	AGCGCT	1 cut(s)	659
Eco52I	CGGCCG	1 cut(s)	291
Eco57I	CTGAAG	3 cut(s)	866, 975, 1932
Eco81I	CCTNAGG	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	1428
EcoNI	CCTNNNNNAGG	1 cut(s)	779
EcoRII	CCWGG	2 cut(s)	801, 1413
EcoT14I	CCWWGG	2 cut(s)	354, 1804
EcoT38I	GRGCYC	2 cut(s)	194, 1435
EgeI	GGCGCC	1 cut(s)	253
EheI	GGCGCC	1 cut(s)	253
ErhI	CCWWGG	2 cut(s)	354, 1804
FaeI	CATG	6 cut(s)	40, 572, 1246, 1453, 1759, 1808
FalI	AAGNNNNNCTT	4 cut(s)	338, 370, 1905, 1937
FaqI	GGGAC	4 cut(s)	401, 608, 948, 1784
FatI	CATG	6 cut(s)	36, 568, 1242, 1449, 1755, 1804
FauNDI	CATATG	3 cut(s)	822, 1705, 1886
FblI	GTMKAC	1 cut(s)	1510
FokI	GGATG	4 cut(s)	659, 694, 1043, 1262
FriOI	GRGCYC	2 cut(s)	194, 1435
FspBI	CTAG	3 cut(s)	120, 126, 2263
FspI	TGCGCA	1 cut(s)	725
GsuI	CTGGAG	1 cut(s)	1995
HaeII	RGCGCY	3 cut(s)	255, 617, 661
HaeIII	GGCC	5 cut(s)	197, 293, 353, 548, 1809
HapII	CCGG	8 cut(s)	42, 194, 200, 294, 515, 530, 563, 1810
HgaI	GACGC	2 cut(s)	38, 188
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	6 cut(s)	40, 572, 1246, 1453, 1759, 1808
HincII	GTYRAC	1 cut(s)	1511
HindII	GTYRAC	1 cut(s)	1511
HindIII	AAGCTT	1 cut(s)	2175
HinfI	GANTC	9 cut(s)	203, 449, 596, 785, 916, 1087, 1559, 1772, 2105
HpaII	CCGG	8 cut(s)	42, 194, 200, 294, 515, 530, 563, 1810
HphI	GGTGA	1 cut(s)	2059
Hpy166II	GTNNAC	4 cut(s)	857, 1027, 1045, 1511
Hpy188I	TCNGA	6 cut(s)	189, 1071, 1165, 1666, 1912, 2188
Hpy188III	TCNNGA	6 cut(s)	233, 977, 1184, 1523, 1640, 2012
Hpy8I	GTNNAC	4 cut(s)	857, 1027, 1045, 1511
Hpy99I	CGWCG	2 cut(s)	32, 271
HpyAV	CCTTC	9 cut(s)	34, 221, 343, 665, 787, 820, 1076, 1420, 1722
HpyCH4III	ACNGT	8 cut(s)	240, 499, 745, 854, 1258, 1271, 1388, 1954
HpyCH4IV	ACGT	4 cut(s)	1100, 1634, 1819, 2137
HpySE526I	ACGT	4 cut(s)	1100, 1634, 1819, 2137
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	6 cut(s)	40, 572, 1246, 1453, 1759, 1808
KasI	GGCGCC	1 cut(s)	251
KpnI	GGTACC	1 cut(s)	1790
Kzo9I	GATC	3 cut(s)	184, 870, 1053
LguI	GCTCTTC	1 cut(s)	1920
LmnI	GCTCC	5 cut(s)	134, 304, 531, 565, 580
Lsp1109I	GCAGC	6 cut(s)	829, 913, 991, 1783, 2041, 2074
LweI	GCATC	4 cut(s)	655, 711, 1633, 1687
MaeI	CTAG	3 cut(s)	120, 126, 2263
MaeII	ACGT	4 cut(s)	1100, 1634, 1819, 2137
MaeIII	GTNAC	1 cut(s)	1722
MalI	GATC	3 cut(s)	186, 872, 1055
MbiI	CCGCTC	1 cut(s)	307
MboI	GATC	3 cut(s)	184, 870, 1053
MfeI	CAATTG	2 cut(s)	158, 317
MhlI	GDGCHC	3 cut(s)	194, 1231, 1435
Mly113I	GGCGCC	1 cut(s)	252
MlyI	GAGTC	5 cut(s)	458, 590, 910, 1553, 1766
MmeI	TCCRAC	2 cut(s)	1108, 2244
MroXI	GAANNNNTTC	2 cut(s)	402, 1875
MseI	TTAA	9 cut(s)	651, 1017, 1331, 1461, 1503, 1653, 1673, 1688, 1728
MslI	CAYNNNNRTG	1 cut(s)	2241
MspA1I	CMGCKG	1 cut(s)	1649
MspI	CCGG	8 cut(s)	42, 194, 200, 294, 515, 530, 563, 1810
MspR9I	CCNGG	6 cut(s)	194, 200, 530, 803, 1415, 1811
MunI	CAATTG	2 cut(s)	158, 317
MvaI	CCWGG	2 cut(s)	803, 1415
MvnI	CGCG	5 cut(s)	32, 51, 140, 287, 1947
NarI	GGCGCC	1 cut(s)	252
NciI	CCSGG	4 cut(s)	194, 200, 530, 1811
NcoI	CCATGG	1 cut(s)	1804
NdeI	CATATG	3 cut(s)	822, 1705, 1886
NdeII	GATC	3 cut(s)	184, 870, 1053
NlaIII	CATG	6 cut(s)	40, 572, 1246, 1453, 1759, 1808
NlaIV	GGNNCC	5 cut(s)	198, 253, 264, 405, 1788
NmeAIII	GCCGAG	2 cut(s)	280, 524
NmuCI	GTSAC	1 cut(s)	1722
NsbI	TGCGCA	1 cut(s)	725
NspV	TTCGAA	1 cut(s)	1715
PceI	AGGCCT	1 cut(s)	353
PciSI	GCTCTTC	1 cut(s)	1920
PcsI	WCGNNNNNNNCGW	2 cut(s)	2134, 2143
PdmI	GAANNNNTTC	2 cut(s)	402, 1875
PfeI	GAWTC	4 cut(s)	203, 785, 1087, 2105
PleI	GAGTC	5 cut(s)	457, 590, 910, 1553, 1766
PluTI	GGCGCC	1 cut(s)	255
PpsI	GAGTC	5 cut(s)	457, 590, 910, 1553, 1766
Psp1406I	AACGTT	1 cut(s)	1634
Psp6I	CCWGG	2 cut(s)	801, 1413
PspGI	CCWGG	2 cut(s)	801, 1413
PspN4I	GGNNCC	5 cut(s)	198, 253, 264, 405, 1788
PspPI	GGNCC	2 cut(s)	196, 1130
PstI	CTGCAG	1 cut(s)	2092
RsaI	GTAC	5 cut(s)	1028, 1255, 1419, 1788, 1822
RsaNI	GTAC	5 cut(s)	1027, 1254, 1418, 1787, 1821
RseI	CAYNNNNRTG	1 cut(s)	2241
SalI	GTCGAC	1 cut(s)	1509
SapI	GCTCTTC	1 cut(s)	1920
SaqAI	TTAA	9 cut(s)	651, 1017, 1331, 1461, 1503, 1653, 1673, 1688, 1728
Sau3AI	GATC	3 cut(s)	184, 870, 1053
Sau96I	GGNCC	2 cut(s)	196, 1130
SchI	GAGTC	5 cut(s)	458, 590, 910, 1553, 1766
ScrFI	CCNGG	6 cut(s)	194, 200, 530, 803, 1415, 1811
SduI	GDGCHC	3 cut(s)	194, 1231, 1435
SfaNI	GCATC	4 cut(s)	655, 711, 1633, 1687
SfcI	CTRYAG	3 cut(s)	942, 1978, 2088
SfoI	GGCGCC	1 cut(s)	253
SfuI	TTCGAA	1 cut(s)	1715
SinI	GGWCC	1 cut(s)	1130
SmiMI	CAYNNNNRTG	1 cut(s)	2241
SmlI	CTYRAG	1 cut(s)	1521
SmoI	CTYRAG	1 cut(s)	1521
SseBI	AGGCCT	1 cut(s)	353
SspDI	GGCGCC	1 cut(s)	251
SspMI	CTAG	3 cut(s)	120, 126, 2263
StuI	AGGCCT	1 cut(s)	353
StyD4I	CCNGG	6 cut(s)	192, 198, 528, 801, 1413, 1809
StyI	CCWWGG	2 cut(s)	354, 1804
TaaI	ACNGT	8 cut(s)	240, 499, 745, 854, 1258, 1271, 1388, 1954
TaiI	ACGT	4 cut(s)	1103, 1637, 1822, 2140
TaqI	TCGA	7 cut(s)	27, 602, 887, 1273, 1510, 1715, 2128
TatI	WGTACW	1 cut(s)	1026
TauI	GCSGC	7 cut(s)	56, 59, 62, 65, 290, 293, 1649
TfiI	GAWTC	4 cut(s)	203, 785, 1087, 2105
Tru1I	TTAA	9 cut(s)	651, 1017, 1331, 1461, 1503, 1653, 1673, 1688, 1728
Tru9I	TTAA	9 cut(s)	651, 1017, 1331, 1461, 1503, 1653, 1673, 1688, 1728
TscAI	CASTG	9 cut(s)	744, 853, 936, 1297, 1326, 1782, 1906, 1923, 1959
TseFI	GTSAC	1 cut(s)	1722
TseI	GCWGC	6 cut(s)	842, 926, 1004, 1796, 2054, 2087
Tsp45I	GTSAC	1 cut(s)	1722
TspDTI	ATGAA	4 cut(s)	696, 839, 1638, 2169
TspGWI	ACGGA	3 cut(s)	396, 485, 863
TspRI	CASTG	9 cut(s)	744, 853, 936, 1297, 1326, 1782, 1906, 1923, 1959
VpaK11BI	GGWCC	1 cut(s)	1130
XagI	CCTNNNNNAGG	1 cut(s)	779
XapI	RAATTY	3 cut(s)	981, 1401, 1581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	1510
XmnI	GAANNNNTTC	2 cut(s)	402, 1875
XspI	CTAG	3 cut(s)	120, 126, 2263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.