Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010089

Physical Location & Seq

Genomic Coordinates Reverse (-)

28722203 .. 28730039

Gene Structure 7837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00023260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2385 bp

ATGCTCTCACTCTCACACCCACTGCGTTCTTGCTCTACTTGTCTTCGCCTACACTCTACTCTCCGCTCTCTCCGTCACTCCTCTCTCTTCCCCATTCCGATTTCCCCAAACCCTAATCGCGCCATGTCCTCCAATCGCCCCTCCGCCTTCGACGCGCTCATGTCCGGCGCACGCGCCGCCGCCGCCAAGAAAAAGCCCCAACCCTCTTCCTCCCCCAAGAAGCGCAAAACCCTAAGCCCTAGCCCTAGCCCCAATTCCGCGCCTAAGGAAAATCCCCAATTGCTATCCAAACCCGAAGACGCTGCTCCGAGCCCGGCCCCGGAATCCAAACCGGAAATGGAGGAAGAAGGTCAAGAACAGTCTGGCAATGGCGCCGAGCTGGCACCGACGGCGAAGAAAGTGTGCGCGGCGGCCGGAGTGGAGGAGCGGACGGCTCAATTGGCGAGTAGAATTGAGCTGTTGAAGAAGAAGGCCTTGGATTTTGACCCGAAGCTGATGGCGAATTGGGACAAGGGCGAAAGGGTTCCGTTTATGTTTCTTTCGTTGGTTTTTAATTTGATTTCCAAAGAGTCTGGGCGGATTGTGATTACGGATATAGTGTGCAATATGCTTAGGACTGTAATCTACACCACGCCGGAGGATTTGCTCCCGGTGGTTTATCTCTCGGCCAATAAGATTGCTCCGGCGCATGAAGGATTGGAGCTTGGCATTGGGGACTCTTCGATTATCAAGGCGCTTTCGCAGGCTTGTGGGAGGAGTGAAAAGGATGTTAAGAAGCGCTATGATGCAGAAGGAGACTTGGGTATTGTTGCACAGAAAAGCCGTTCATCCCAAACTATGATGCGCAAGCCTGAGCCATTGACTGTCAGCAAGGTTTTCAACACATTTCGCACCCTTGCTAAGGAATCTGGGAAGGATAGCCAGGAGAAGAAAAAGAACCATATGAAGGCACTTCTTGTTGCTGCCACTGACTGTGAACCTCTGTATTTGATCCGTTTGCTTCAGTCAAAGTTGCGAATTGGATTGGCAGAGCAGACTCTTTTGGCTGCACTGGGACAAGCTGCAGTCTATACTGAAGAACATTCTAAACCACCTCCTGAAATTCAGTCTCCTTTAGAAGAGGCTGCAAAGATTGTTAAACAAGTGTACTCTCTGCTTCCTGTTTACGATAAGATCATCCCTGCCCTTCTGAGTGGTGGTGTTTGGAATCTTCCAAAAACATGTAGCTTTACTTTGGGTATCCCAGTTGGACCAATGCTTGCAAAGCCAAGTAAAGGGGTATCTGAGATTGTCCAAAAGTTTCAGGATACAGAATACACCTGTGAATACAAGTATGATGGAGAGCGTGCCCAGATACATTACATGGAGGATGGTACTGTTGAGATATACAGTCGAAATGCTGAACGAAACACCGGAAAGTTCCCTGATGTTGCAATTGCAGTGTCAAGGTTAAAGAAGTCGTCTGTAAAATCATTTGTTTTAGATTGTGAATTGGTTGCCTATGACCGTGCAAATAACAAAATTCTGCCCTTCCAGGTACTTAGCACCCGAGCCCGTAAAAATGTGAGCATGAGTGATATTAAGATTGAGGTCTGCATATTTGCTTTTGATATGTTGTTTCTTAATGGTCGACCCCTTACTCAAGAACAGCTCAAAGTTCGCAGAGAGTATCTTTATGACTCTTTTGAGGAAGAAGCTGGAATTTTTCAGTTTGCCACAGCAATAACCTCAAAGGATATTGATGAAATACAAACGTTTCTTGATGCCGCCGTTAATTCAAGTTCTGAGGGTTTAATAATCAAAACATTAAGCAAAGATGCTACATACGAGCCTTCGAAGCGGTCACTTAACTGGCTGAAATTGAAGAAAGATTACATGGATAGTTTCGGGGACTCACTGGACTTGGTACCTATTGCTGCTTTCCATGGCCGGGGAAAACGTACAGGTGTCTATGGTGCTTTTCTCCTTGCTTGCTACGATAGCAATAATGAAGAGTTTCAAAGCATATGTAAAATAGGCACTGGATTTTCTGAAGCAGTGCTTGAAGAGCGTTCTGCCAGCCTGCGTGAAACAGTGATACCTAAACCTAAGACATACTATAGCTATGCAGAAACAAGTAATGCAAACACGCCAGATGTATGGTTTGAACCCACTCAGGTTTGGGAGGTGAAAGCTGCTGACTTGACTATTAGTCCTGTGTATCGTGCTGCAGTAGGCATAGTGGATTCTAATAAGGGTATTTCTCTTCGATTTCCACGTCTTGTTCGTGTTAGGGAAGATAAAAAACCAGAGGAAGCTTCATCATCTGAGCAGGTTGCTGATATGTATTCTGCTCAATCCAACAAAAGTTCTAACCACCAAGATGACAAGGAAGATGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000012 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006302 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016874 GO:0016886 GO:0022616 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0070013 GO:0070988 GO:0071704 GO:0080111 GO:0090304 GO:0140097 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03030 ko03410 ko03420 ko03430 map03030 map03410 map03420 map03430

Pfam Domains

Protein Families

DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_A_N

Protein Analysis

794

Amino Acids

87.89

Weight (kDa)

8.21

Isoelectric Point (pI)

54.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_ligase_A_N	PF04675	176 - 351	3.5e-51	DNA ligase N terminus
DNA_ligase_A_M	PF01068	418 - 622	2.6e-65	ATP dependent DNA ligase domain
DNA_ligase_A_C	PF04679	647 - 761	1.5e-22	ATP dependent DNA ligase C terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08130
fragaria_vesca	FvH4_3g30730 FvH4_3g30731 FvH4_3g30740
malus_domestica	MD03G1127000.v1.1 MD11G1147600.v1.1
prunus_persica	Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0056931
rosa_laevigata	RLG00000035140
rosa_multiflora	Rmu_sc0002035.1_g000008
rosa_roxburghii	Rroxscaffold_1G00023260 Rroxscaffold_1G00059860
rosa_rugosa	Rorug05G0304400
rosa_samantha	Rh5AG373800 Rh5BG384800 Rh5CG408100
rosa_wichuraiana	Rw5G035180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	845
Acc36I	ACCTGC	1 cut(s)	2302
Acc65I	GGTACC	1 cut(s)	1906
AccB1I	GGYRCC	3 cut(s)	371, 382, 1906
AccBSI	CCGCTC	2 cut(s)	66, 427
AccI	GTMKAC	1 cut(s)	1630
AccII	CGCG	5 cut(s)	120, 155, 174, 260, 407
AclI	AACGTT	1 cut(s)	1754
AclWI	GGATC	1 cut(s)	985
AcoI	YGGCCR	3 cut(s)	411, 666, 1927
AcsI	RAATTY	3 cut(s)	1101, 1521, 1701
AcuI	CTGAAG	3 cut(s)	986, 1095, 2052
AcyI	GRCGYC	1 cut(s)	372
AfaI	GTAC	5 cut(s)	1148, 1375, 1539, 1908, 1942
AfeI	AGCGCT	1 cut(s)	779
AfiI	CCNNNNNNNGG	5 cut(s)	319, 901, 946, 1274, 1930
AflIII	ACRYGT	1 cut(s)	1220
AgsI	TTSAA	7 cut(s)	463, 880, 1779, 1864, 2000, 2045, 2147
AhdI	GACNNNNNGTC	1 cut(s)	2190
AjiI	CACGTC	1 cut(s)	2258
AjnI	CCWGG	2 cut(s)	921, 1533
AjuI	GAANNNNNNNTTGG	2 cut(s)	458, 490
Alw26I	GTCTC	2 cut(s)	789, 1113
AlwI	GGATC	1 cut(s)	985
Ama87I	CYCGRG	1 cut(s)	1548
Aor51HI	AGCGCT	1 cut(s)	779
AoxI	GGCC	5 cut(s)	315, 411, 471, 666, 1927
ApeKI	GCWGC	8 cut(s)	302, 962, 1046, 1061, 1124, 1916, 2174, 2207
ApoI	RAATTY	3 cut(s)	1101, 1521, 1701
Asp700I	GAANNNNTTC	2 cut(s)	522, 1995
Asp718I	GGTACC	1 cut(s)	1906
AspS9I	GGNCC	2 cut(s)	316, 1250
AsuC2I	CCSGG	4 cut(s)	314, 320, 650, 1931
AsuHPI	GGTGA	1 cut(s)	2179
AsuII	TTCGAA	1 cut(s)	1835
AvaI	CYCGRG	1 cut(s)	1548
AvaII	GGWCC	1 cut(s)	1250
AxyI	CCTNAGG	1 cut(s)	264
BaeGI	GKGCMC	1 cut(s)	1351
BanI	GGYRCC	3 cut(s)	371, 382, 1906
BanII	GRGCYC	2 cut(s)	314, 1555
BarI	GAAGNNNNNNTAC	2 cut(s)	1856, 1888
BbsI	GAAGAC	2 cut(s)	35, 303
BbvI	GCAGC	8 cut(s)	289, 949, 1033, 1048, 1111, 1903, 2161, 2194
BccI	CCATC	3 cut(s)	490, 1331, 1364
BceAI	ACGGC	4 cut(s)	405, 447, 807, 1754
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BciT130I	CCWGG	2 cut(s)	923, 1535
BciVI	GTATCC	2 cut(s)	1250, 1300
BcnI	CCSGG	4 cut(s)	314, 320, 650, 1931
BcoDI	GTCTC	2 cut(s)	789, 1113
BfaI	CTAG	3 cut(s)	240, 246, 2383
BfmI	CTRYAG	3 cut(s)	1062, 2098, 2208
BfoI	RGCGCY	3 cut(s)	375, 737, 781
BfuAI	ACCTGC	1 cut(s)	2302
BfuI	GTATCC	2 cut(s)	1250, 1300
BglI	GCCNNNNNGGC	1 cut(s)	380
Bme1390I	CCNGG	6 cut(s)	314, 320, 650, 923, 1535, 1931
Bme18I	GGWCC	1 cut(s)	1250
BmeRI	GACNNNNNGTC	1 cut(s)	2190
BmeT110I	CYCGRG	1 cut(s)	1548
BmgBI	CACGTC	1 cut(s)	2258
BmgT120I	GGNCC	2 cut(s)	316, 1250
BmiI	GGNNCC	5 cut(s)	318, 373, 384, 525, 1908
BmrFI	CCNGG	6 cut(s)	314, 320, 650, 923, 1535, 1931
BmrI	ACTGGG	2 cut(s)	1061, 1238
BmsI	GCATC	4 cut(s)	775, 831, 1753, 1807
BmuI	ACTGGG	2 cut(s)	1061, 1238
BpiI	GAAGAC	2 cut(s)	35, 303
Bpu10I	CCTNAGC	4 cut(s)	233, 611, 852, 900
Bpu14I	TTCGAA	1 cut(s)	1835
BpuEI	CTTGAG	1 cut(s)	1626
BpuMI	CCSGG	4 cut(s)	314, 320, 650, 1931
BsaHI	GRCGYC	1 cut(s)	372
BsaJI	CCNNGG	4 cut(s)	318, 474, 1924, 1930
BsaWI	WCCGGW	2 cut(s)	331, 1412
Bsc4I	CCNNNNNNNGG	5 cut(s)	319, 901, 946, 1274, 1930
Bse1I	ACTGG	5 cut(s)	1056, 1244, 1856, 1902, 2026
Bse21I	CCTNAGG	1 cut(s)	264
Bse3DI	GCAATG	1 cut(s)	373
BseBI	CCWGG	2 cut(s)	923, 1535
BseDI	CCNNGG	4 cut(s)	318, 474, 1924, 1930
BseGI	GGATG	4 cut(s)	772, 827, 1176, 1375
BseLI	CCNNNNNNNGG	5 cut(s)	319, 901, 946, 1274, 1930
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	6 cut(s)	843, 1181, 1275, 1776, 2168, 2298
BseNI	ACTGG	5 cut(s)	1056, 1244, 1856, 1902, 2026
BseRI	GAGGAG	3 cut(s)	70, 437, 769
BseSI	GKGCMC	1 cut(s)	1351
BseX3I	CGGCCG	1 cut(s)	411
BseXI	GCAGC	8 cut(s)	289, 949, 1033, 1048, 1111, 1903, 2161, 2194
BsgI	GTGCAG	1 cut(s)	1032
Bsh1236I	CGCG	5 cut(s)	120, 155, 174, 260, 407
Bsh1285I	CGRYCG	1 cut(s)	414
BshFI	GGCC	5 cut(s)	317, 413, 473, 668, 1929
BshNI	GGYRCC	3 cut(s)	371, 382, 1906
BsiEI	CGRYCG	1 cut(s)	414
BsiHKCI	CYCGRG	1 cut(s)	1548
BslFI	GGGAC	4 cut(s)	521, 728, 1068, 1904
BslI	CCNNNNNNNGG	5 cut(s)	319, 901, 946, 1274, 1930
BsmAI	GTCTC	2 cut(s)	789, 1113
BsmFI	GGGAC	4 cut(s)	521, 728, 1068, 1904
BsnI	GGCC	5 cut(s)	317, 413, 473, 668, 1929
BsoBI	CYCGRG	1 cut(s)	1548
Bsp119I	TTCGAA	1 cut(s)	1835
Bsp1286I	GDGCHC	3 cut(s)	314, 1351, 1555
Bsp143I	GATC	2 cut(s)	990, 1173
Bsp19I	CCATGG	1 cut(s)	1924
BspANI	GGCC	5 cut(s)	317, 413, 473, 668, 1929
BspCNI	CTCAG	6 cut(s)	844, 1182, 1276, 1777, 2167, 2299
BspFNI	CGCG	5 cut(s)	120, 155, 174, 260, 407
BspLI	GGNNCC	5 cut(s)	318, 373, 384, 525, 1908
BspMAI	CTGCAG	2 cut(s)	1066, 2212
BspMI	ACCTGC	1 cut(s)	2302
BspPI	GGATC	1 cut(s)	985
BspQI	GCTCTTC	1 cut(s)	2040
BspT104I	TTCGAA	1 cut(s)	1835
BspT107I	GGYRCC	3 cut(s)	371, 382, 1906
BsrBI	CCGCTC	2 cut(s)	66, 427
BsrDI	GCAATG	1 cut(s)	373
BsrI	ACTGG	5 cut(s)	1056, 1244, 1856, 1902, 2026
BssECI	CCNNGG	4 cut(s)	318, 474, 1924, 1930
BssMI	GATC	2 cut(s)	990, 1173
BssNI	GRCGYC	1 cut(s)	372
BssT1I	CCWWGG	2 cut(s)	474, 1924
Bst2UI	CCWGG	2 cut(s)	923, 1535
Bst4CI	ACNGT	8 cut(s)	360, 619, 865, 974, 1378, 1391, 1508, 2074
Bst6I	CTCTTC	7 cut(s)	92, 211, 724, 1113, 1986, 2040, 2250
BstACI	GRCGYC	1 cut(s)	372
BstBI	TTCGAA	1 cut(s)	1835
BstC8I	GCNNGC	9 cut(s)	172, 381, 744, 848, 1260, 1347, 1972, 2059, 2063
BstDSI	CCRYGG	1 cut(s)	1924
BstENI	CCTNNNNNAGG	1 cut(s)	899
BstF5I	GGATG	4 cut(s)	772, 827, 1176, 1375
BstFNI	CGCG	5 cut(s)	120, 155, 174, 260, 407
BstH2I	RGCGCY	3 cut(s)	375, 737, 781
BstKTI	GATC	2 cut(s)	993, 1176
BstMAI	GTCTC	2 cut(s)	789, 1113
BstMBI	GATC	2 cut(s)	990, 1173
BstMCI	CGRYCG	1 cut(s)	414
BstNI	CCWGG	2 cut(s)	923, 1535
BstNSI	RCATGY	1 cut(s)	1224
BstSCI	CCNGG	6 cut(s)	312, 318, 648, 921, 1533, 1929
BstSFI	CTRYAG	3 cut(s)	1062, 2098, 2208
BstSLI	GKGCMC	1 cut(s)	1351
BstUI	CGCG	5 cut(s)	120, 155, 174, 260, 407
BstV1I	GCAGC	8 cut(s)	289, 949, 1033, 1048, 1111, 1903, 2161, 2194
BstV2I	GAAGAC	2 cut(s)	35, 303
BstXI	CCANNNNNNTGG	1 cut(s)	2139
BstZI	CGGCCG	1 cut(s)	411
Bsu36I	CCTNAGG	1 cut(s)	264
BsuI	GTATCC	2 cut(s)	1250, 1300
BsuRI	GGCC	5 cut(s)	317, 413, 473, 668, 1929
BtgI	CCRYGG	1 cut(s)	1924
BtrI	CACGTC	1 cut(s)	2258
BtsCI	GGATG	4 cut(s)	772, 827, 1176, 1375
BtsI	GCAGTG	3 cut(s)	20, 1446, 2043
BtsIMutI	CAGTG	8 cut(s)	20, 966, 1049, 1446, 1895, 2019, 2043, 2079
BveI	ACCTGC	1 cut(s)	2302
Cac8I	GCNNGC	9 cut(s)	172, 381, 744, 848, 1260, 1347, 1972, 2059, 2063
Cfr13I	GGNCC	2 cut(s)	316, 1250
CseI	GACGC	2 cut(s)	161, 308
Csp6I	GTAC	5 cut(s)	1147, 1374, 1538, 1907, 1941
CviAII	CATG	8 cut(s)	124, 160, 689, 1221, 1363, 1570, 1876, 1925
CviQI	GTAC	5 cut(s)	1147, 1374, 1538, 1907, 1941
DinI	GGCGCC	1 cut(s)	373
DpnI	GATC	2 cut(s)	992, 1175
DpnII	GATC	2 cut(s)	990, 1173
DriI	GACNNNNNGTC	1 cut(s)	2190
EaeI	YGGCCR	3 cut(s)	411, 666, 1927
EagI	CGGCCG	1 cut(s)	411
Eam1104I	CTCTTC	7 cut(s)	92, 211, 724, 1113, 1986, 2040, 2250
Eam1105I	GACNNNNNGTC	1 cut(s)	2190
EarI	CTCTTC	7 cut(s)	92, 211, 724, 1113, 1986, 2040, 2250
EciI	GGCGGA	2 cut(s)	133, 592
EclXI	CGGCCG	1 cut(s)	411
Eco130I	CCWWGG	2 cut(s)	474, 1924
Eco147I	AGGCCT	1 cut(s)	473
Eco24I	GRGCYC	2 cut(s)	314, 1555
Eco47I	GGWCC	1 cut(s)	1250
Eco47III	AGCGCT	1 cut(s)	779
Eco52I	CGGCCG	1 cut(s)	411
Eco57I	CTGAAG	3 cut(s)	986, 1095, 2052
Eco81I	CCTNAGG	1 cut(s)	264
Eco88I	CYCGRG	1 cut(s)	1548
EcoNI	CCTNNNNNAGG	1 cut(s)	899
EcoRII	CCWGG	2 cut(s)	921, 1533
EcoT14I	CCWWGG	2 cut(s)	474, 1924
EcoT38I	GRGCYC	2 cut(s)	314, 1555
EgeI	GGCGCC	1 cut(s)	373
EheI	GGCGCC	1 cut(s)	373
ErhI	CCWWGG	2 cut(s)	474, 1924
FaeI	CATG	8 cut(s)	127, 163, 692, 1224, 1366, 1573, 1879, 1928
FalI	AAGNNNNNCTT	4 cut(s)	458, 490, 2025, 2057
FaqI	GGGAC	4 cut(s)	521, 728, 1068, 1904
FatI	CATG	8 cut(s)	123, 159, 688, 1220, 1362, 1569, 1875, 1924
FauNDI	CATATG	2 cut(s)	942, 2006
FblI	GTMKAC	1 cut(s)	1630
FokI	GGATG	4 cut(s)	779, 814, 1163, 1382
FriOI	GRGCYC	2 cut(s)	314, 1555
FspBI	CTAG	3 cut(s)	240, 246, 2383
FspI	TGCGCA	1 cut(s)	845
HaeII	RGCGCY	3 cut(s)	375, 737, 781
HaeIII	GGCC	5 cut(s)	317, 413, 473, 668, 1929
HgaI	GACGC	2 cut(s)	161, 308
Hin1I	GRCGYC	1 cut(s)	372
Hin1II	CATG	8 cut(s)	127, 163, 692, 1224, 1366, 1573, 1879, 1928
HincII	GTYRAC	1 cut(s)	1631
HindII	GTYRAC	1 cut(s)	1631
HindIII	AAGCTT	1 cut(s)	2295
HinfI	GANTC	9 cut(s)	323, 569, 716, 905, 1036, 1207, 1679, 1892, 2225
HphI	GGTGA	1 cut(s)	2179
Hpy166II	GTNNAC	4 cut(s)	977, 1147, 1165, 1631
Hpy188I	TCNGA	7 cut(s)	99, 309, 1191, 1285, 1786, 2032, 2308
Hpy188III	TCNNGA	5 cut(s)	353, 1097, 1304, 1643, 1760
Hpy8I	GTNNAC	4 cut(s)	977, 1147, 1165, 1631
Hpy99I	CGWCG	2 cut(s)	155, 391
HpyCH4III	ACNGT	8 cut(s)	360, 619, 865, 974, 1378, 1391, 1508, 2074
HpyCH4IV	ACGT	3 cut(s)	1754, 1939, 2257
HpySE526I	ACGT	3 cut(s)	1754, 1939, 2257
Hsp92I	GRCGYC	1 cut(s)	372
Hsp92II	CATG	8 cut(s)	127, 163, 692, 1224, 1366, 1573, 1879, 1928
KasI	GGCGCC	1 cut(s)	371
KpnI	GGTACC	1 cut(s)	1910
Kzo9I	GATC	2 cut(s)	990, 1173
LguI	GCTCTTC	1 cut(s)	2040
LmnI	GCTCC	5 cut(s)	310, 424, 651, 685, 700
Lsp1109I	GCAGC	8 cut(s)	289, 949, 1033, 1048, 1111, 1903, 2161, 2194
LweI	GCATC	4 cut(s)	775, 831, 1753, 1807
MaeI	CTAG	3 cut(s)	240, 246, 2383
MaeII	ACGT	3 cut(s)	1754, 1939, 2257
MaeIII	GTNAC	2 cut(s)	74, 1842
MalI	GATC	2 cut(s)	992, 1175
MbiI	CCGCTC	2 cut(s)	66, 427
MboI	GATC	2 cut(s)	990, 1173
MfeI	CAATTG	3 cut(s)	278, 437, 1434
MhlI	GDGCHC	3 cut(s)	314, 1351, 1555
Mly113I	GGCGCC	1 cut(s)	372
MlyI	GAGTC	5 cut(s)	578, 710, 1030, 1673, 1886
MmeI	TCCRAC	2 cut(s)	1228, 2364
MroXI	GAANNNNTTC	2 cut(s)	522, 1995
MslI	CAYNNNNRTG	1 cut(s)	2361
MspR9I	CCNGG	6 cut(s)	314, 320, 650, 923, 1535, 1931
MunI	CAATTG	3 cut(s)	278, 437, 1434
MvaI	CCWGG	2 cut(s)	923, 1535
MvnI	CGCG	5 cut(s)	120, 155, 174, 260, 407
NarI	GGCGCC	1 cut(s)	372
NciI	CCSGG	4 cut(s)	314, 320, 650, 1931
NcoI	CCATGG	1 cut(s)	1924
NdeI	CATATG	2 cut(s)	942, 2006
NdeII	GATC	2 cut(s)	990, 1173
NlaIII	CATG	8 cut(s)	127, 163, 692, 1224, 1366, 1573, 1879, 1928
NlaIV	GGNNCC	5 cut(s)	318, 373, 384, 525, 1908
NmeAIII	GCCGAG	2 cut(s)	400, 644
NmuCI	GTSAC	2 cut(s)	74, 1842
NsbI	TGCGCA	1 cut(s)	845
NspI	RCATGY	1 cut(s)	1224
NspV	TTCGAA	1 cut(s)	1835
PceI	AGGCCT	1 cut(s)	473
PciI	ACATGT	1 cut(s)	1220
PciSI	GCTCTTC	1 cut(s)	2040
PcsI	WCGNNNNNNNCGW	2 cut(s)	2254, 2263
PdmI	GAANNNNTTC	2 cut(s)	522, 1995
PfeI	GAWTC	4 cut(s)	323, 905, 1207, 2225
PleI	GAGTC	5 cut(s)	577, 710, 1030, 1673, 1886
PluTI	GGCGCC	1 cut(s)	375
PpsI	GAGTC	5 cut(s)	577, 710, 1030, 1673, 1886
PscI	ACATGT	1 cut(s)	1220
Psp1406I	AACGTT	1 cut(s)	1754
Psp6I	CCWGG	2 cut(s)	921, 1533
PspGI	CCWGG	2 cut(s)	921, 1533
PspN4I	GGNNCC	5 cut(s)	318, 373, 384, 525, 1908
PspPI	GGNCC	2 cut(s)	316, 1250
PstI	CTGCAG	2 cut(s)	1066, 2212
RsaI	GTAC	5 cut(s)	1148, 1375, 1539, 1908, 1942
RsaNI	GTAC	5 cut(s)	1147, 1374, 1538, 1907, 1941
RseI	CAYNNNNRTG	1 cut(s)	2361
SalI	GTCGAC	1 cut(s)	1629
SapI	GCTCTTC	1 cut(s)	2040
Sau3AI	GATC	2 cut(s)	990, 1173
Sau96I	GGNCC	2 cut(s)	316, 1250
SchI	GAGTC	5 cut(s)	578, 710, 1030, 1673, 1886
ScrFI	CCNGG	6 cut(s)	314, 320, 650, 923, 1535, 1931
SduI	GDGCHC	3 cut(s)	314, 1351, 1555
SfaNI	GCATC	4 cut(s)	775, 831, 1753, 1807
SfcI	CTRYAG	3 cut(s)	1062, 2098, 2208
SfoI	GGCGCC	1 cut(s)	373
SfuI	TTCGAA	1 cut(s)	1835
SinI	GGWCC	1 cut(s)	1250
SmiMI	CAYNNNNRTG	1 cut(s)	2361
SmlI	CTYRAG	1 cut(s)	1641
SmoI	CTYRAG	1 cut(s)	1641
SseBI	AGGCCT	1 cut(s)	473
SspDI	GGCGCC	1 cut(s)	371
SspMI	CTAG	3 cut(s)	240, 246, 2383
StuI	AGGCCT	1 cut(s)	473
StyD4I	CCNGG	6 cut(s)	312, 318, 648, 921, 1533, 1929
StyI	CCWWGG	2 cut(s)	474, 1924
TaaI	ACNGT	8 cut(s)	360, 619, 865, 974, 1378, 1391, 1508, 2074
TaiI	ACGT	3 cut(s)	1757, 1942, 2260
TaqI	TCGA	6 cut(s)	150, 722, 1393, 1630, 1835, 2248
TatI	WGTACW	1 cut(s)	1146
TauI	GCSGC	6 cut(s)	179, 182, 185, 410, 413, 1769
TfiI	GAWTC	4 cut(s)	323, 905, 1207, 2225
TscAI	CASTG	8 cut(s)	27, 973, 1056, 1446, 1902, 2026, 2043, 2079
TseFI	GTSAC	2 cut(s)	74, 1842
TseI	GCWGC	8 cut(s)	302, 962, 1046, 1061, 1124, 1916, 2174, 2207
Tsp45I	GTSAC	2 cut(s)	74, 1842
TspDTI	ATGAA	6 cut(s)	705, 816, 959, 1758, 2004, 2289
TspGWI	ACGGA	4 cut(s)	62, 516, 605, 983
TspRI	CASTG	8 cut(s)	27, 973, 1056, 1446, 1902, 2026, 2043, 2079
VpaK11BI	GGWCC	1 cut(s)	1250
XagI	CCTNNNNNAGG	1 cut(s)	899
XapI	RAATTY	3 cut(s)	1101, 1521, 1701
XceI	RCATGY	1 cut(s)	1224
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334
XmiI	GTMKAC	1 cut(s)	1630
XmnI	GAANNNNTTC	2 cut(s)	522, 1995
XspI	CTAG	3 cut(s)	240, 246, 2383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.