Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010089

Physical Location & Seq

Genomic Coordinates Forward (+)

24130963 .. 24131379

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g30731.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTCCGGCGCACGCGCCGCCGCCGCCAAGAACAAGCCCTCCACTTCCCCCAAGAAACGCAAAACCCCGCCGGTCCCTAAAGAAAACCCCAAATACGACGAGGCTTCTCCTACTCCGAGCCCCGCCGCGGAATCCGAACCGGAAACGGTGAAAGAAGACGCCGGCAAGGTGGAACCGGCGCCGAAGAAGCCGCGCGCGGCGAGCGGAGCGGAGGAGCGGACGGCTCAATTGAAGAGTAGGATTGAGCTGCTGAAGAAGGAGGACTTGGAGTTTGACCCGAGCGCGATGGCGAATTGGGGCAAAGGCGAGAGGGTTCCGTTTATGTTTGTTGCTTTGGCTTTTGATTTGATTGAAAAGGAGAGTGGGAGGATTGTGATTACGGATATTGTGTGTAATATGTTGAGGACTGTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000012 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006302 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016874 GO:0016886 GO:0022616 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0070013 GO:0070988 GO:0071704 GO:0080111 GO:0090304 GO:0140097 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03030 ko03410 ko03420 ko03430 map03030 map03410 map03420 map03430

Pfam Domains

Protein Families

DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_A_N

Protein Analysis

139

Amino Acids

15.02

Weight (kDa)

8.99

Isoelectric Point (pI)

58.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08130
fragaria_vesca	FvH4_3g30730 FvH4_3g30731 FvH4_3g30740
malus_domestica	MD03G1127000.v1.1 MD11G1147600.v1.1
prunus_persica	Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0056931
rosa_laevigata	RLG00000035140
rosa_multiflora	Rmu_sc0002035.1_g000008
rosa_roxburghii	Rroxscaffold_1G00023260 Rroxscaffold_1G00059860
rosa_rugosa	Rorug05G0304400
rosa_samantha	Rh5AG373800 Rh5BG384800 Rh5CG408100
rosa_wichuraiana	Rw5G035180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	178
AccBSI	CCGCTC	3 cut(s)	204, 209, 217
AccII	CGCG	6 cut(s)	15, 128, 193, 195, 197, 284
AcuI	CTGAAG	1 cut(s)	272
AcyI	GRCGYC	2 cut(s)	159, 179
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	2 cut(s)	232, 353
AjuI	GAANNNNNNNTTGG	2 cut(s)	248, 280
AloI	GAACNNNNNNTCC	2 cut(s)	23, 55
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Ama87I	CYCGRG	1 cut(s)	277
ApeKI	GCWGC	1 cut(s)	247
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AspLEI	GCGC	6 cut(s)	11, 17, 181, 195, 197, 284
AspS9I	GGNCC	1 cut(s)	73
AsuHPI	GGTGA	1 cut(s)	160
AvaI	CYCGRG	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	73
BanI	GGYRCC	1 cut(s)	178
BanII	GRGCYC	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	234
BccI	CCATC	1 cut(s)	280
BceAI	ACGGC	1 cut(s)	237
BfoI	RGCGCY	1 cut(s)	182
BisI	GCNGC	7 cut(s)	18, 21, 24, 126, 191, 198, 248
BlsI	GCNGC	7 cut(s)	19, 22, 25, 127, 192, 199, 249
Bme18I	GGWCC	1 cut(s)	73
BmeT110I	CYCGRG	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	4 cut(s)	75, 174, 180, 315
BpiI	GAAGAC	1 cut(s)	162
BsaHI	GRCGYC	2 cut(s)	159, 179
BsaJI	CCNNGG	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	139
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse118I	RCCGGY	3 cut(s)	70, 161, 175
BseDI	CCNNGG	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	127
BsePI	GCGCGC	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	227
BseXI	GCAGC	1 cut(s)	234
Bsh1236I	CGCG	6 cut(s)	15, 128, 193, 195, 197, 284
BshNI	GGYRCC	1 cut(s)	178
BsiHKCI	CYCGRG	1 cut(s)	277
BsiSI	CCGG	5 cut(s)	6, 71, 140, 162, 176
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	277
Bsp1286I	GDGCHC	1 cut(s)	122
BspFNI	CGCG	6 cut(s)	15, 128, 193, 195, 197, 284
BspLI	GGNNCC	4 cut(s)	75, 174, 180, 315
BspT107I	GGYRCC	1 cut(s)	178
BsrBI	CCGCTC	3 cut(s)	204, 209, 217
BsrFI	RCCGGY	3 cut(s)	70, 161, 175
BssAI	RCCGGY	3 cut(s)	70, 161, 175
BssECI	CCNNGG	1 cut(s)	126
BssHII	GCGCGC	1 cut(s)	193
BssNI	GRCGYC	2 cut(s)	159, 179
Bst4CI	ACNGT	2 cut(s)	148, 409
Bst6I	CTCTTC	1 cut(s)	227
BstACI	GRCGYC	2 cut(s)	159, 179
BstC8I	GCNNGC	4 cut(s)	13, 163, 195, 202
BstDSI	CCRYGG	1 cut(s)	126
BstFNI	CGCG	6 cut(s)	15, 128, 193, 195, 197, 284
BstH2I	RGCGCY	1 cut(s)	182
BstHHI	GCGC	6 cut(s)	11, 17, 181, 195, 197, 284
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 23, 187, 201, 206
BstUI	CGCG	6 cut(s)	15, 128, 193, 195, 197, 284
BstV1I	GCAGC	1 cut(s)	234
BstV2I	GAAGAC	1 cut(s)	162
BtgI	CCRYGG	1 cut(s)	126
BtgZI	GCGATG	1 cut(s)	299
Cac8I	GCNNGC	4 cut(s)	13, 163, 195, 202
CfoI	GCGC	6 cut(s)	11, 17, 181, 195, 197, 284
Cfr10I	RCCGGY	3 cut(s)	70, 161, 175
Cfr13I	GGNCC	1 cut(s)	73
Cfr42I	CCGCGG	1 cut(s)	129
CseI	GACGC	1 cut(s)	167
CviJI	RGCY	7 cut(s)	37, 104, 120, 190, 224, 247, 338
CviKI_1	RGCY	7 cut(s)	37, 104, 120, 190, 224, 247, 338
DinI	GGCGCC	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Eco24I	GRGCYC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	272
Eco88I	CYCGRG	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	122
EgeI	GGCGCC	1 cut(s)	180
EheI	GGCGCC	1 cut(s)	180
FaiI	YATR	2 cut(s)	323, 398
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FaqI	GGGAC	1 cut(s)	59
FauI	CCCGC	2 cut(s)	75, 130
Fnu4HI	GCNGC	7 cut(s)	18, 21, 24, 126, 191, 198, 248
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	7 cut(s)	18, 21, 24, 126, 191, 198, 248
GlaI	GCGC	6 cut(s)	10, 16, 180, 194, 196, 283
GluI	GCNGC	7 cut(s)	18, 21, 24, 126, 191, 198, 248
HaeII	RGCGCY	1 cut(s)	182
HapII	CCGG	5 cut(s)	6, 71, 140, 162, 176
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	6 cut(s)	11, 17, 181, 195, 197, 284
Hin1I	GRCGYC	2 cut(s)	159, 179
Hin6I	GCGC	6 cut(s)	9, 15, 179, 193, 195, 282
HinP1I	GCGC	6 cut(s)	9, 15, 179, 193, 195, 282
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	5 cut(s)	6, 71, 140, 162, 176
HphI	GGTGA	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	117, 136
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	2 cut(s)	148, 409
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 23, 187, 201, 206
Hsp92I	GRCGYC	2 cut(s)	159, 179
HspAI	GCGC	6 cut(s)	9, 15, 179, 193, 195, 282
KasI	GGCGCC	1 cut(s)	178
KroI	GCCGGC	1 cut(s)	161
KroNI	GCCGGC	1 cut(s)	163
KspI	CCGCGG	1 cut(s)	129
LmnI	GCTCC	2 cut(s)	206, 214
LpnPI	CCDG	5 cut(s)	19, 84, 153, 175, 189
Lsp1109I	GCAGC	1 cut(s)	234
MauBI	CGCGCGCG	1 cut(s)	193
MbiI	CCGCTC	3 cut(s)	204, 209, 217
MboII	GAAGA	4 cut(s)	167, 196, 244, 265
MfeI	CAATTG	1 cut(s)	227
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	2 cut(s)	227, 292
Mly113I	GGCGCC	1 cut(s)	179
MnlI	CCTC	7 cut(s)	49, 94, 205, 253, 303, 360, 396
MroNI	GCCGGC	1 cut(s)	161
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	5 cut(s)	6, 71, 140, 162, 176
MunI	CAATTG	1 cut(s)	227
MvnI	CGCG	6 cut(s)	15, 128, 193, 195, 197, 284
MwoI	GCNNNNNNNGC	5 cut(s)	17, 23, 187, 201, 206
NaeI	GCCGGC	1 cut(s)	163
NarI	GGCGCC	1 cut(s)	179
NgoMIV	GCCGGC	1 cut(s)	161
NlaIV	GGNNCC	4 cut(s)	75, 174, 180, 315
PauI	GCGCGC	1 cut(s)	193
PdiI	GCCGGC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	7 cut(s)	19, 22, 25, 127, 192, 199, 249
PluTI	GGCGCC	1 cut(s)	182
PspN4I	GGNNCC	4 cut(s)	75, 174, 180, 315
PspPI	GGNCC	1 cut(s)	73
PteI	GCGCGC	1 cut(s)	193
SacII	CCGCGG	1 cut(s)	129
SatI	GCNGC	7 cut(s)	18, 21, 24, 126, 191, 198, 248
Sau96I	GGNCC	1 cut(s)	73
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	2 cut(s)	171, 249
SfoI	GGCGCC	1 cut(s)	180
Sfr303I	CCGCGG	1 cut(s)	129
SgrBI	CCGCGG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	73
Sse9I	AATT	2 cut(s)	227, 292
SspDI	GGCGCC	1 cut(s)	178
TaaI	ACNGT	2 cut(s)	148, 409
TasI	AATT	2 cut(s)	227, 292
TauI	GCSGC	6 cut(s)	20, 23, 26, 128, 193, 200
TfiI	GAWTC	1 cut(s)	131
TseI	GCWGC	1 cut(s)	247
TspGWI	ACGGA	2 cut(s)	306, 395
VpaK11BI	GGWCC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.