MD11G1147600.v1.1

DNA ligase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
13919681 .. 13926212
6532 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1147600.v1.1.491

Sequence Viewer

Length: 1533 bp
ATGCACAAGCCTGATGCATTAACAGTCGCCAAGGTTTTCAGTACATTTCGTCAACTTGCTAAGGAATCTGGGAAGGATAGTCAGGAGAGGAAAAAAAACCATATCAAGGCACTTCTTGTTGCTGCTACTGACCGTGAACCCTTATATCTGATCCGTTTGCTTCAGACAAAGTTGCGAATTGGATTGGCAGAGCAGACTCTTTTAGCTGCATTGGGACAAGCTGCAGTGTATACTGAAAAAAATTCTACACCACCTCCTCATATTCAGAGTCCTCTAGAAGAGGCTGCAAAAATAGTTAAGCAAGTGTACTCTCTGCTTCCTGATTACGATAAAATCGTCCCTGCCCTTTTAAGTGGTGGCGTGTGGAATCTTCCAGAGATATGCAACTTTACTTTGGGTGTCCCAGTTGGACCTATGCTAGCAAAACCAACTAAAGGGGTATCTGAGATTGTACAGAAGTTTCAGGATACAGAATACACATGTGAATACAAGTATGATGGAGAACGTGCCCAGATACATTTCATGGAAAATGGTTCGGTTGAGATATACAGTCGAAATGCTGAAAGAAACACCGGAAAGTACCCTGATGTTGTTGTTGCAGTGTCGAGGTTAAAGAAGTCATCTGTAACATCATTTGTTTTGGATTGCGAAATTGTTGCTTACGACCGTGAAAAACAGAAAATTCTGCCCTTCCAGGTACTCAGCACTAGACCTCGTAAAAATGTGAGCGTGAGTGATATCAAGGTTGAAGTCTGCATATTTTCTTTTGATATGTTGTATCTTAATGGCCGACCACTTATTCAGGAACAACTGAAAGTTCGTAGAGAGTGTCTGTATGACTCTTTTGTGGAAGAAGCTGGATTTTTTCAGTTTGCCACAGCCTTAACATCAAATGATATAGATGAAATACAAAAGTTTCTTGATGCTGCTGTCAGTTCAAGTTCCGAGGGTTTAATTATTAAAACATTGAACAAAGATGCTACCTACGAGCCTTCAAAGCGGTCACTTAACTGGCTGAAATTGAAGAAAGATTACATGGACAGTATTGGGGACTCACTAGACTTGGTACCTATTGCTGCTTTCCATGGCCGGGGAAAACGTACAGGTGTCTATGGTGCATTCCTCCTCGCTTGTTATGATAGCAATAATGAAGAGTTTCAAAGCATTTGTAAAGTAGGCACTGGACTCACCGAAGCAATGCTTGAAGAACGCTCTGCCAGTCTCCTTACGAAAATGATACCCAAACCTAAGCCATATTATAGGTATTCTGATTCATTGAATCCAGATGTATGGTTTGATCCCTCAGAGGTTTGGGAGGTGAAAGCTGCGGACCTGACTATTAGCCCCGTTCATCGTGCTGCAGTTGGCATAGTGGATGCTAATAAGGGTATCTCTCTCCGCTTTCCACGTCTAATTCGTGTTCGGGAAGATAAACCTCCAGAGCAAGCCACATCGTCTGAACAGGTAGCCGAGTTGTATAATGCTCAAGCCATCAACCATTCAAACAATCAAAATGACAACGGAGATGATTAG

Protein Analysis

511

Amino Acids

57.18

Weight (kDa)

6.26

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_ligase_A_N PF04675 3 - 71 6e-18 DNA ligase N terminus
DNA_ligase_A_M PF01068 138 - 342 3e-67 ATP dependent DNA ligase domain
DNA_ligase_A_C PF04679 367 - 478 1.3e-21 ATP dependent DNA ligase C terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1066
AccB1I GGYRCC 1 cut(s) 1066
AccI GTMKAC 1 cut(s) 230
AciI CCGC 3 cut(s) 1000, 1328, 1399
AclWI GGATC 2 cut(s) 145, 1292
AcoI YGGCCR 2 cut(s) 787, 1087
AcsI RAATTY 2 cut(s) 241, 681
AcuI CTGAAG 1 cut(s) 146
AfaI GTAC 7 cut(s) 43, 308, 453, 581, 699, 1068, 1102
AfiI CCNNNNNNNGG 3 cut(s) 106, 434, 1090
AflIII ACRYGT 1 cut(s) 479
AgsI TTSAA 9 cut(s) 749, 939, 970, 996, 1024, 1160, 1205, 1279, 1503
AjiI CACGTC 1 cut(s) 1409
AjnI CCWGG 1 cut(s) 693
AluBI AGCT 4 cut(s) 206, 221, 857, 1325
AluI AGCT 4 cut(s) 206, 221, 857, 1325
Alw26I GTCTC 1 cut(s) 1226
AlwI GGATC 2 cut(s) 145, 1292
AoxI GGCC 2 cut(s) 787, 1087
ApeKI GCWGC 8 cut(s) 122, 206, 221, 284, 926, 1076, 1325, 1358
ApoI RAATTY 2 cut(s) 241, 681
Asp700I GAANNNNTTC 1 cut(s) 1155
Asp718I GGTACC 1 cut(s) 1066
AspS9I GGNCC 2 cut(s) 410, 1330
AsuC2I CCSGG 1 cut(s) 1091
AsuHPI GGTGA 2 cut(s) 1180, 1330
AsuNHI GCTAGC 1 cut(s) 418
AvaII GGWCC 2 cut(s) 410, 1330
BaeGI GKGCMC 1 cut(s) 511
BanI GGYRCC 1 cut(s) 1066
BarI GAAGNNNNNNTAC 2 cut(s) 1016, 1048
BbvI GCAGC 8 cut(s) 109, 193, 208, 271, 913, 1063, 1312, 1345
BccI CCATC 2 cut(s) 491, 1499
BcgI CGANNNNNNTGC 2 cut(s) 638, 672
BciT130I CCWGG 1 cut(s) 695
BciVI GTATCC 1 cut(s) 460
BcnI CCSGG 1 cut(s) 1091
BcoDI GTCTC 1 cut(s) 1226
BfaI CTAG 4 cut(s) 275, 419, 708, 1058
BfmI CTRYAG 2 cut(s) 222, 1359
BfuI GTATCC 1 cut(s) 460
BisI GCNGC 8 cut(s) 123, 207, 222, 285, 927, 1077, 1326, 1359
BlsI GCNGC 8 cut(s) 124, 208, 223, 286, 928, 1078, 1327, 1360
Bme1390I CCNGG 2 cut(s) 695, 1091
Bme18I GGWCC 2 cut(s) 410, 1330
BmgBI CACGTC 1 cut(s) 1409
BmgT120I GGNCC 2 cut(s) 410, 1330
BmiI GGNNCC 1 cut(s) 1068
BmrFI CCNGG 2 cut(s) 695, 1091
BmrI ACTGGG 1 cut(s) 398
BmsI GCATC 4 cut(s) 4, 913, 967, 1366
BmtI GCTAGC 1 cut(s) 422
BmuI ACTGGG 1 cut(s) 398
BpmI CTGGAG 1 cut(s) 1422
Bpu10I CCTNAGC 2 cut(s) 60, 1248
BpuEI CTTGAG 1 cut(s) 1470
BpuMI CCSGG 1 cut(s) 1091
BsaJI CCNNGG 4 cut(s) 30, 945, 1084, 1090
BsaWI WCCGGW 1 cut(s) 572
BsaXI ACNNNNNCTCC 2 cut(s) 238, 268
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 434, 1090
Bse1I ACTGG 4 cut(s) 404, 1016, 1186, 1218
Bse3DI GCAATG 1 cut(s) 1203
BseBI CCWGG 1 cut(s) 695
BseDI CCNNGG 4 cut(s) 30, 945, 1084, 1090
BseGI GGATG 1 cut(s) 1381
BseLI CCNNNNNNNGG 3 cut(s) 106, 434, 1090
BseMI GCAATG 1 cut(s) 1203
BseMII CTCAG 3 cut(s) 435, 715, 1317
BseNI ACTGG 4 cut(s) 404, 1016, 1186, 1218
BseRI GAGGAG 2 cut(s) 246, 1115
BseSI GKGCMC 1 cut(s) 511
BseXI GCAGC 8 cut(s) 109, 193, 208, 271, 913, 1063, 1312, 1345
Bsh1285I CGRYCG 1 cut(s) 667
BshFI GGCC 2 cut(s) 789, 1089
BshNI GGYRCC 1 cut(s) 1066
BsiEI CGRYCG 1 cut(s) 667
BsiSI CCGG 2 cut(s) 573, 1090
BslFI GGGAC 4 cut(s) 228, 323, 386, 1064
BslI CCNNNNNNNGG 3 cut(s) 106, 434, 1090
BsmAI GTCTC 1 cut(s) 1226
BsmFI GGGAC 4 cut(s) 228, 323, 386, 1064
BsmI GAATGC 1 cut(s) 1118
BsnI GGCC 2 cut(s) 789, 1089
Bsp1286I GDGCHC 1 cut(s) 511
Bsp1407I TGTACA 1 cut(s) 451
Bsp143I GATC 2 cut(s) 150, 1297
Bsp19I CCATGG 1 cut(s) 1084
BspACI CCGC 3 cut(s) 1000, 1328, 1399
BspANI GGCC 2 cut(s) 789, 1089
BspCNI CTCAG 3 cut(s) 436, 714, 1316
BspLI GGNNCC 1 cut(s) 1068
BspMAI CTGCAG 2 cut(s) 226, 1363
BspOI GCTAGC 1 cut(s) 422
BspPI GGATC 2 cut(s) 145, 1292
BspT107I GGYRCC 1 cut(s) 1066
BsrDI GCAATG 1 cut(s) 1203
BsrGI TGTACA 1 cut(s) 451
BsrI ACTGG 4 cut(s) 404, 1016, 1186, 1218
BssECI CCNNGG 4 cut(s) 30, 945, 1084, 1090
BssMI GATC 2 cut(s) 150, 1297
BssNAI GTATAC 1 cut(s) 231
BssT1I CCWWGG 2 cut(s) 30, 1084
Bst1107I GTATAC 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 695
Bst4CI ACNGT 5 cut(s) 25, 134, 551, 668, 1043
Bst6I CTCTTC 2 cut(s) 273, 1146
BstAUI TGTACA 1 cut(s) 451
BstC8I GCNNGC 2 cut(s) 420, 1446
BstDEI CTNAG 5 cut(s) 60, 444, 701, 1248, 1303
BstDSI CCRYGG 1 cut(s) 1084
BstF5I GGATG 1 cut(s) 1381
BstKTI GATC 2 cut(s) 153, 1300
BstMAI GTCTC 1 cut(s) 1226
BstMBI GATC 2 cut(s) 150, 1297
BstMCI CGRYCG 1 cut(s) 667
BstMWI GCNNNNNNNGC 1 cut(s) 997
BstNI CCWGG 1 cut(s) 695
BstNSI RCATGY 1 cut(s) 483
BstSCI CCNGG 2 cut(s) 693, 1089
BstSFI CTRYAG 2 cut(s) 222, 1359
BstSLI GKGCMC 1 cut(s) 511
BstV1I GCAGC 8 cut(s) 109, 193, 208, 271, 913, 1063, 1312, 1345
BstXI CCANNNNNNTGG 1 cut(s) 1290
BstZ17I GTATAC 1 cut(s) 231
BsuI GTATCC 1 cut(s) 460
BsuRI GGCC 2 cut(s) 789, 1089
BtgI CCRYGG 1 cut(s) 1084
BtrI CACGTC 1 cut(s) 1409
BtsCI GGATG 1 cut(s) 1381
BtsI GCAGTG 2 cut(s) 231, 606
BtsIMutI CAGTG 3 cut(s) 231, 606, 1179
Cac8I GCNNGC 2 cut(s) 420, 1446
Cfr13I GGNCC 2 cut(s) 410, 1330
Csp6I GTAC 7 cut(s) 42, 307, 452, 580, 698, 1067, 1101
CviAII CATG 4 cut(s) 480, 523, 1036, 1085
CviQI GTAC 7 cut(s) 42, 307, 452, 580, 698, 1067, 1101
DdeI CTNAG 5 cut(s) 60, 444, 701, 1248, 1303
DpnI GATC 2 cut(s) 152, 1299
DpnII GATC 2 cut(s) 150, 1297
EaeI YGGCCR 2 cut(s) 787, 1087
Eam1104I CTCTTC 2 cut(s) 273, 1146
EarI CTCTTC 2 cut(s) 273, 1146
Eco130I CCWWGG 2 cut(s) 30, 1084
Eco32I GATATC 1 cut(s) 739
Eco47I GGWCC 2 cut(s) 410, 1330
Eco57I CTGAAG 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 693
EcoRV GATATC 1 cut(s) 739
EcoT14I CCWWGG 2 cut(s) 30, 1084
EcoT22I ATGCAT 1 cut(s) 19
ErhI CCWWGG 2 cut(s) 30, 1084
FaeI CATG 4 cut(s) 483, 526, 1039, 1088
FalI AAGNNNNNCTT 2 cut(s) 1185, 1217
FaqI GGGAC 4 cut(s) 228, 323, 386, 1064
FatI CATG 4 cut(s) 479, 522, 1035, 1084
FblI GTMKAC 1 cut(s) 230
Fnu4HI GCNGC 8 cut(s) 123, 207, 222, 285, 927, 1077, 1326, 1359
FokI GGATG 1 cut(s) 1388
Fsp4HI GCNGC 8 cut(s) 123, 207, 222, 285, 927, 1077, 1326, 1359
FspBI CTAG 4 cut(s) 275, 419, 708, 1058
GluI GCNGC 8 cut(s) 123, 207, 222, 285, 927, 1077, 1326, 1359
GsuI CTGGAG 1 cut(s) 1422
HaeIII GGCC 2 cut(s) 789, 1089
HapII CCGG 2 cut(s) 573, 1090
Hin1II CATG 4 cut(s) 483, 526, 1039, 1088
HincII GTYRAC 1 cut(s) 53
HindII GTYRAC 1 cut(s) 53
HinfI GANTC 9 cut(s) 65, 196, 268, 367, 839, 1052, 1185, 1271, 1279
HpaII CCGG 2 cut(s) 573, 1090
HphI GGTGA 2 cut(s) 1180, 1330
Hpy166II GTNNAC 4 cut(s) 53, 137, 231, 307
Hpy188I TCNGA 8 cut(s) 150, 165, 267, 445, 946, 1270, 1306, 1459
Hpy8I GTNNAC 4 cut(s) 53, 137, 231, 307
HpyAV CCTTC 3 cut(s) 67, 700, 1002
HpyCH4III ACNGT 5 cut(s) 25, 134, 551, 668, 1043
HpyCH4IV ACGT 3 cut(s) 505, 1099, 1408
HpyF10VI GCNNNNNNNGC 1 cut(s) 997
HpyF3I CTNAG 5 cut(s) 60, 444, 701, 1248, 1303
HpySE526I ACGT 3 cut(s) 505, 1099, 1408
Hsp92II CATG 4 cut(s) 483, 526, 1039, 1088
KpnI GGTACC 1 cut(s) 1070
Kzo9I GATC 2 cut(s) 150, 1297
Lsp1109I GCAGC 8 cut(s) 109, 193, 208, 271, 913, 1063, 1312, 1345
LweI GCATC 4 cut(s) 4, 913, 967, 1366
MaeI CTAG 4 cut(s) 275, 419, 708, 1058
MaeII ACGT 3 cut(s) 505, 1099, 1408
MaeIII GTNAC 2 cut(s) 625, 1002
MalI GATC 2 cut(s) 152, 1299
MboI GATC 2 cut(s) 150, 1297
MboII GAAGA 7 cut(s) 290, 362, 863, 1036, 1163, 1217, 1439
MhlI GDGCHC 1 cut(s) 511
MluCI AATT 7 cut(s) 177, 241, 651, 681, 954, 1019, 1413
MlyI GAGTC 5 cut(s) 190, 277, 833, 1046, 1179
MmeI TCCRAC 1 cut(s) 388
Mph1103I ATGCAT 1 cut(s) 19
MroXI GAANNNNTTC 1 cut(s) 1155
MseI TTAA 9 cut(s) 20, 297, 350, 611, 783, 884, 953, 960, 1008
MspI CCGG 2 cut(s) 573, 1090
MspR9I CCNGG 2 cut(s) 695, 1091
Mva1269I GAATGC 1 cut(s) 1118
MvaI CCWGG 1 cut(s) 695
MwoI GCNNNNNNNGC 1 cut(s) 997
NciI CCSGG 1 cut(s) 1091
NcoI CCATGG 1 cut(s) 1084
NdeII GATC 2 cut(s) 150, 1297
NheI GCTAGC 1 cut(s) 418
NlaIII CATG 4 cut(s) 483, 526, 1039, 1088
NlaIV GGNNCC 1 cut(s) 1068
NmeAIII GCCGAG 1 cut(s) 1495
NmuCI GTSAC 1 cut(s) 1002
NsiI ATGCAT 1 cut(s) 19
NspI RCATGY 1 cut(s) 483
PciI ACATGT 1 cut(s) 479
PcsI WCGNNNNNNNCGW 2 cut(s) 333, 1414
PctI GAATGC 1 cut(s) 1118
PdmI GAANNNNTTC 1 cut(s) 1155
PfeI GAWTC 4 cut(s) 65, 367, 1271, 1279
PkrI GCNGC 8 cut(s) 124, 208, 223, 286, 928, 1078, 1327, 1360
PleI GAGTC 5 cut(s) 190, 276, 833, 1046, 1179
PpsI GAGTC 5 cut(s) 190, 276, 833, 1046, 1179
PscI ACATGT 1 cut(s) 479
Psp6I CCWGG 1 cut(s) 693
PspGI CCWGG 1 cut(s) 693
PspN4I GGNNCC 1 cut(s) 1068
PspPI GGNCC 2 cut(s) 410, 1330
PstI CTGCAG 2 cut(s) 226, 1363
RsaI GTAC 7 cut(s) 43, 308, 453, 581, 699, 1068, 1102
RsaNI GTAC 7 cut(s) 42, 307, 452, 580, 698, 1067, 1101
SaqAI TTAA 9 cut(s) 20, 297, 350, 611, 783, 884, 953, 960, 1008
SatI GCNGC 8 cut(s) 123, 207, 222, 285, 927, 1077, 1326, 1359
Sau3AI GATC 2 cut(s) 150, 1297
Sau96I GGNCC 2 cut(s) 410, 1330
SchI GAGTC 5 cut(s) 190, 277, 833, 1046, 1179
ScrFI CCNGG 2 cut(s) 695, 1091
SduI GDGCHC 1 cut(s) 511
SfaNI GCATC 4 cut(s) 4, 913, 967, 1366
SfcI CTRYAG 2 cut(s) 222, 1359
SinI GGWCC 2 cut(s) 410, 1330
SmlI CTYRAG 1 cut(s) 1485
SmoI CTYRAG 1 cut(s) 1485
Sse9I AATT 7 cut(s) 177, 241, 651, 681, 954, 1019, 1413
SsiI CCGC 3 cut(s) 1000, 1328, 1399
SspMI CTAG 4 cut(s) 275, 419, 708, 1058
StyD4I CCNGG 2 cut(s) 693, 1089
StyI CCWWGG 2 cut(s) 30, 1084
TaaI ACNGT 5 cut(s) 25, 134, 551, 668, 1043
TaiI ACGT 3 cut(s) 508, 1102, 1411
TaqI TCGA 2 cut(s) 553, 605
TasI AATT 7 cut(s) 177, 241, 651, 681, 954, 1019, 1413
TatI WGTACW 3 cut(s) 41, 306, 451
TfiI GAWTC 4 cut(s) 65, 367, 1271, 1279
Tru1I TTAA 9 cut(s) 20, 297, 350, 611, 783, 884, 953, 960, 1008
Tru9I TTAA 9 cut(s) 20, 297, 350, 611, 783, 884, 953, 960, 1008
TscAI CASTG 3 cut(s) 231, 606, 1186
TseFI GTSAC 1 cut(s) 1002
TseI GCWGC 8 cut(s) 122, 206, 221, 284, 926, 1076, 1325, 1358
Tsp45I GTSAC 1 cut(s) 1002
TspDTI ATGAA 5 cut(s) 511, 918, 1164, 1263, 1340
TspGWI ACGGA 1 cut(s) 143
TspRI CASTG 3 cut(s) 231, 606, 1186
VpaK11BI GGWCC 2 cut(s) 410, 1330
XapI RAATTY 2 cut(s) 241, 681
XbaI TCTAGA 1 cut(s) 274
XceI RCATGY 1 cut(s) 483
XmiI GTMKAC 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 1155
XspI CTAG 4 cut(s) 275, 419, 708, 1058
Zsp2I ATGCAT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.