Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010089

Physical Location & Seq

Genomic Coordinates Forward (+)

24130963 .. 24138644

Gene Structure 7682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g30740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2034 bp

ATGTCCGGCGCACGCGCCGCCGCCGCCAAGAACAAGCCCTCCACTTCCCCCAAGAAACGCAAAACCCCGCCGGTCCCTAAAGAAAACCCCAAATACGACGAGGCTTCTCCTACTCCGAGCCCCGCCGCGGAATCCGAACCGGAAACGGTGAAAGAAGACGCCGGCAAGGTGGAACCGGCGCCGAAGAAGCCGCGCGCGGCGAGCGGAGCGGAGGAGCGGACGGCTCAATTGAAGAGTAGGATTGAGCTGCTGAAGAAGGAGGACTTGGAGTTTGACCCGAGCGCGATGGCGAATTGGGGCAAAGGCGAGAGGGTTCCGTTTATGTTTGTTGCTTTGGCTTTTGATTTGATTGAAAAGGAGAGTGGGAGGATTGTGATTACGGATATTGCAGAAGGAGACTTGGGTATTGTTGCGCAGAGAGGCCGTTCATTACAGAAAATGATGCGCCAGCCTGAGCCATTGACTGTCACTAAGGTTTTCAACACATTTTGTACCCTTGCTAAGGAATATGGGAAGGATAGCCAGGAGAAGAAAAAGAACCATATGATAGCACTTCTTGTGGCTGCCACTGGCTGTGAACCTAAGTATTTGACCCGTTTGCTTCAGTCGAAGATGCGAATTGGATTGGCGGAGCAAACTCTTTTGGCCGCACTGGGACAAGCTGCAGTCTATACTGAAGAACATTCTACACCAGCTCCTGAAATTCAATCTCATTTAGAAGAGGCTGCAAGGATTGTTAAAGGAATGTACTCTCTTCTTCCTGTCTACGATAAAATCATCCCTGCCCTTCTGAGTGGTGGTGTTTGGAATCTTCCAAAAACATGTTGCTTTACTTTGGGTATCCCAGTTGGACCTATGCTTGCAAAGCCATGTAAGAGGGTATCTGAGATTGTACAAAAGTTCCAGGATACAGAATACACATGTAAATACAAGTATGATGGGGAACGTGCACAGATACATTACATGGATGATGGTTCTGTTGAGATATACAGTCGAAATGCTGAACGGAACACAGGAAAGTTCCCTGATGTTGCGGTTGCAGTGTCAAGGTTAAAGAAGTCATCTGCAAAATCATTTGTTTTAGATTGTGAAATCGTTGCCTATGACCGTGAAAATAACAAAATTCTGACCTTCCAGGTACTTAACACTCGAGCCCGTAAAAATGTGAGCGTCAGCGATATTAAGATTGGGGTCTGCATATTTGCTTTTGATATATTGTTTCATACTGGTCGACCACTTACTCAAGAGCAGCTCAAAGTTCGTAGAGAGTATCTTTATGACTCTTTCAAGGAAGAAGCTGGAGTTTTTCAGTTTGCCACAGCAATAACCTCAAAGGATATTGATGAAATACAAAAGTTTTTTGATGCTGCCGTTAATTCGAGTACTGAAGGTTTGATAATCAAAACATTAAACAAAGATGCTACATACGAGCCTTCAAAGCGGTCGCTGAACTGGCTGAAATTGAAGAAAGATTACATGGATAGTTTTGGGGACTCACTGGACTTGGTACCTATTGCTGCTTTCCATGGCCGGGGCAAACGTACAGGTGTATATGGCGCTTTTCTCCTTGCTTGCTACGATAGCGGTAATGAAGAGTTCCAAAGCATATGTAAAATAAGCACTGGATTTACTGAAGCTGTGCTTGAAGAACGTTCTGTCCGCCTGCGTGAAACAGTGATACCCAAACCTAAGACATACTATAGCTATGCAGACACAAGTAATGCAGATACTCCAGATGTATGGTTTGAACCCAGTCAGGTTAAGGGTTCCCCTCCTCCCACCCGATCTGTTTGGGAGGTGAAAGCCGCTGAATTGACTATTAGTCCCGTGTATCATGCTGCAGTAGGCGTAGTGGATGCTAATAAGGGTATTTCTCTTCGATTTCCACACCTTGTTCGTGTTAGGGAGGACAAAAAACCAGAGGAAGCTTATCATCTGAACAGGTTACTGAGATGTATAATGCTCAATCTAACAAAAGTTCAAAGCACCAAGATGACAAGAAAGATGAAGACTAGGAACAAGAGTTCTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000012 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006302 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016874 GO:0016886 GO:0022616 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0070013 GO:0070988 GO:0071704 GO:0080111 GO:0090304 GO:0140097 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03030 ko03410 ko03420 ko03430 map03030 map03410 map03420 map03430

Pfam Domains

Protein Families

DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_A_N

Protein Analysis

678

Amino Acids

75.57

Weight (kDa)

9.1

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_ligase_A_N	PF04675	130 - 218	2.7e-22	DNA ligase N terminus
DNA_ligase_A_M	PF01068	285 - 489	1.6e-64	ATP dependent DNA ligase domain
DNA_ligase_A_C	PF04679	514 - 638	1.1e-17	ATP dependent DNA ligase C terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08130
fragaria_vesca	FvH4_3g30730 FvH4_3g30731 FvH4_3g30740
malus_domestica	MD03G1127000.v1.1 MD11G1147600.v1.1
prunus_persica	Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0056931
rosa_laevigata	RLG00000035140
rosa_multiflora	Rmu_sc0002035.1_g000008
rosa_roxburghii	Rroxscaffold_1G00023260 Rroxscaffold_1G00059860
rosa_rugosa	Rorug05G0304400
rosa_samantha	Rh5AG373800 Rh5BG384800 Rh5CG408100
rosa_wichuraiana	Rw5G035180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	414
Acc65I	GGTACC	1 cut(s)	1507
AccB1I	GGYRCC	2 cut(s)	178, 1507
AccBSI	CCGCTC	3 cut(s)	204, 209, 217
AccI	GTMKAC	2 cut(s)	765, 1231
AccII	CGCG	6 cut(s)	15, 128, 193, 195, 197, 284
AclI	AACGTT	1 cut(s)	1651
AcoI	YGGCCR	2 cut(s)	645, 1528
AcsI	RAATTY	2 cut(s)	702, 1122
AcuI	CTGAAG	5 cut(s)	272, 587, 696, 1407, 1653
AcyI	GRCGYC	2 cut(s)	159, 179
AfaI	GTAC	7 cut(s)	493, 749, 894, 1140, 1384, 1509, 1543
AfiI	CCNNNNNNNGG	3 cut(s)	127, 502, 1531
AflIII	ACRYGT	2 cut(s)	821, 920
AhdI	GACNNNNNGTC	1 cut(s)	1821
AjnI	CCWGG	3 cut(s)	522, 903, 1134
AjuI	GAANNNNNNNTTGG	2 cut(s)	248, 280
AloI	GAACNNNNNNTCC	5 cut(s)	23, 55, 1641, 1673, 2008
AluBI	AGCT	8 cut(s)	247, 662, 695, 1252, 1298, 1637, 1704, 1928
AluI	AGCT	8 cut(s)	247, 662, 695, 1252, 1298, 1637, 1704, 1928
Alw21I	GWGCWC	1 cut(s)	952
Alw26I	GTCTC	1 cut(s)	390
Alw44I	GTGCAC	1 cut(s)	948
AlwNI	CAGNNNCTG	1 cut(s)	698
Ama87I	CYCGRG	2 cut(s)	277, 1149
AoxI	GGCC	3 cut(s)	421, 645, 1528
ApaLI	GTGCAC	1 cut(s)	948
ApeKI	GCWGC	8 cut(s)	247, 563, 662, 725, 1249, 1367, 1517, 1838
ApoI	RAATTY	2 cut(s)	702, 1122
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
Asp718I	GGTACC	1 cut(s)	1507
AspLEI	GCGC	9 cut(s)	11, 17, 181, 195, 197, 284, 415, 447, 1559
AspS9I	GGNCC	2 cut(s)	73, 851
AsuC2I	CCSGG	1 cut(s)	1532
AsuHPI	GGTGA	2 cut(s)	160, 1810
AvaI	CYCGRG	2 cut(s)	277, 1149
AvaII	GGWCC	2 cut(s)	73, 851
BaeGI	GKGCMC	1 cut(s)	952
BanI	GGYRCC	2 cut(s)	178, 1507
BanII	GRGCYC	2 cut(s)	122, 1156
BarI	GAAGNNNNNNTAC	2 cut(s)	1457, 1489
BbsI	GAAGAC	2 cut(s)	162, 2015
Bbv12I	GWGCWC	1 cut(s)	952
BbvI	GCAGC	8 cut(s)	234, 550, 649, 712, 1261, 1354, 1504, 1825
BccI	CCATC	3 cut(s)	280, 932, 965
BceAI	ACGGC	3 cut(s)	237, 408, 1355
BciT130I	CCWGG	3 cut(s)	524, 905, 1136
BciVI	GTATCC	2 cut(s)	851, 901
BcnI	CCSGG	1 cut(s)	1532
BcoDI	GTCTC	1 cut(s)	390
BfaI	CTAG	1 cut(s)	2013
BfmI	CTRYAG	3 cut(s)	663, 1699, 1839
BfoI	RGCGCY	2 cut(s)	182, 1560
BfuI	GTATCC	2 cut(s)	851, 901
BmcAI	AGTACT	1 cut(s)	1384
Bme1390I	CCNGG	4 cut(s)	524, 905, 1136, 1532
Bme18I	GGWCC	2 cut(s)	73, 851
BmeRI	GACNNNNNGTC	1 cut(s)	1821
BmeT110I	CYCGRG	2 cut(s)	277, 1149
BmgT120I	GGNCC	2 cut(s)	73, 851
BmiI	GGNNCC	6 cut(s)	75, 174, 180, 315, 1509, 1768
BmrFI	CCNGG	4 cut(s)	524, 905, 1136, 1532
BmrI	ACTGGG	3 cut(s)	662, 839, 1746
BmsI	GCATC	5 cut(s)	432, 603, 1354, 1408, 1846
BmuI	ACTGGG	3 cut(s)	662, 839, 1746
BpiI	GAAGAC	2 cut(s)	162, 2015
BpmI	CTGGAG	2 cut(s)	1320, 1716
Bpu10I	CCTNAGC	2 cut(s)	453, 501
BpuEI	CTTGAG	1 cut(s)	1227
BpuMI	CCSGG	1 cut(s)	1532
BsaHI	GRCGYC	2 cut(s)	159, 179
BsaJI	CCNNGG	3 cut(s)	126, 1525, 1531
BsaWI	WCCGGW	1 cut(s)	139
BsaXI	ACNNNNNCTCC	4 cut(s)	23, 53, 679, 709
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 502, 1531
Bse118I	RCCGGY	3 cut(s)	70, 161, 175
Bse1I	ACTGG	8 cut(s)	574, 657, 845, 1231, 1457, 1503, 1627, 1752
BseBI	CCWGG	3 cut(s)	524, 905, 1136
BseDI	CCNNGG	3 cut(s)	126, 1525, 1531
BseGI	GGATG	3 cut(s)	777, 973, 1861
BseLI	CCNNNNNNNGG	3 cut(s)	127, 502, 1531
BseMII	CTCAG	4 cut(s)	444, 782, 876, 1940
BseNI	ACTGG	8 cut(s)	574, 657, 845, 1231, 1457, 1503, 1627, 1752
BsePI	GCGCGC	1 cut(s)	193
BseRI	GAGGAG	2 cut(s)	227, 1764
BseSI	GKGCMC	1 cut(s)	952
BseXI	GCAGC	8 cut(s)	234, 550, 649, 712, 1261, 1354, 1504, 1825
Bsh1236I	CGCG	6 cut(s)	15, 128, 193, 195, 197, 284
Bsh1285I	CGRYCG	1 cut(s)	1445
BshFI	GGCC	3 cut(s)	423, 647, 1530
BshNI	GGYRCC	2 cut(s)	178, 1507
BsiEI	CGRYCG	1 cut(s)	1445
BsiHKAI	GWGCWC	1 cut(s)	952
BsiHKCI	CYCGRG	2 cut(s)	277, 1149
BsiSI	CCGG	6 cut(s)	6, 71, 140, 162, 176, 1531
BslFI	GGGAC	4 cut(s)	59, 669, 1505, 1809
BslI	CCNNNNNNNGG	3 cut(s)	127, 502, 1531
BsmAI	GTCTC	1 cut(s)	390
BsmFI	GGGAC	4 cut(s)	59, 669, 1505, 1809
BsnI	GGCC	3 cut(s)	423, 647, 1530
BsoBI	CYCGRG	2 cut(s)	277, 1149
Bsp1286I	GDGCHC	3 cut(s)	122, 952, 1156
Bsp1407I	TGTACA	1 cut(s)	892
Bsp143I	GATC	1 cut(s)	1784
Bsp19I	CCATGG	1 cut(s)	1525
BspANI	GGCC	3 cut(s)	423, 647, 1530
BspCNI	CTCAG	4 cut(s)	445, 783, 877, 1941
BspFNI	CGCG	6 cut(s)	15, 128, 193, 195, 197, 284
BspLI	GGNNCC	6 cut(s)	75, 174, 180, 315, 1509, 1768
BspMAI	CTGCAG	2 cut(s)	667, 1843
BspT107I	GGYRCC	2 cut(s)	178, 1507
BsrBI	CCGCTC	3 cut(s)	204, 209, 217
BsrFI	RCCGGY	3 cut(s)	70, 161, 175
BsrGI	TGTACA	1 cut(s)	892
BsrI	ACTGG	8 cut(s)	574, 657, 845, 1231, 1457, 1503, 1627, 1752
BssAI	RCCGGY	3 cut(s)	70, 161, 175
BssECI	CCNNGG	3 cut(s)	126, 1525, 1531
BssHII	GCGCGC	1 cut(s)	193
BssMI	GATC	1 cut(s)	1784
BssNI	GRCGYC	2 cut(s)	159, 179
BssT1I	CCWWGG	1 cut(s)	1525
Bst2UI	CCWGG	3 cut(s)	524, 905, 1136
Bst4CI	ACNGT	5 cut(s)	148, 466, 992, 1109, 1675
Bst6I	CTCTTC	5 cut(s)	227, 714, 759, 1587, 1881
BstACI	GRCGYC	2 cut(s)	159, 179
BstAUI	TGTACA	1 cut(s)	892
BstC8I	GCNNGC	8 cut(s)	13, 163, 195, 202, 449, 861, 1573, 1664
BstDEI	CTNAG	8 cut(s)	453, 471, 501, 582, 791, 885, 1689, 1949
BstDSI	CCRYGG	2 cut(s)	126, 1525
BstENI	CCTNNNNNAGG	1 cut(s)	500
BstF5I	GGATG	3 cut(s)	777, 973, 1861
BstFNI	CGCG	6 cut(s)	15, 128, 193, 195, 197, 284
BstH2I	RGCGCY	2 cut(s)	182, 1560
BstHHI	GCGC	9 cut(s)	11, 17, 181, 195, 197, 284, 415, 447, 1559
BstKTI	GATC	1 cut(s)	1787
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	1 cut(s)	1784
BstMCI	CGRYCG	1 cut(s)	1445
BstMWI	GCNNNNNNNGC	9 cut(s)	17, 23, 187, 201, 206, 865, 1438, 1453, 1581
BstNI	CCWGG	3 cut(s)	524, 905, 1136
BstNSI	RCATGY	2 cut(s)	825, 924
BstSCI	CCNGG	4 cut(s)	522, 903, 1134, 1530
BstSFI	CTRYAG	3 cut(s)	663, 1699, 1839
BstSLI	GKGCMC	1 cut(s)	952
BstUI	CGCG	6 cut(s)	15, 128, 193, 195, 197, 284
BstV1I	GCAGC	8 cut(s)	234, 550, 649, 712, 1261, 1354, 1504, 1825
BstV2I	GAAGAC	2 cut(s)	162, 2015
BstXI	CCANNNNNNTGG	1 cut(s)	1740
BsuI	GTATCC	2 cut(s)	851, 901
BsuRI	GGCC	3 cut(s)	423, 647, 1530
BtgI	CCRYGG	2 cut(s)	126, 1525
BtgZI	GCGATG	1 cut(s)	299
BtsCI	GGATG	3 cut(s)	777, 973, 1861
BtsI	GCAGTG	1 cut(s)	1047
BtsIMutI	CAGTG	6 cut(s)	567, 650, 1047, 1496, 1620, 1680
Cac8I	GCNNGC	8 cut(s)	13, 163, 195, 202, 449, 861, 1573, 1664
CaiI	CAGNNNCTG	1 cut(s)	698
CfoI	GCGC	9 cut(s)	11, 17, 181, 195, 197, 284, 415, 447, 1559
Cfr10I	RCCGGY	3 cut(s)	70, 161, 175
Cfr13I	GGNCC	2 cut(s)	73, 851
Cfr42I	CCGCGG	1 cut(s)	129
CseI	GACGC	2 cut(s)	167, 1159
Csp6I	GTAC	7 cut(s)	492, 748, 893, 1139, 1383, 1508, 1542
CviAII	CATG	7 cut(s)	822, 870, 921, 964, 1477, 1526, 1835
CviQI	GTAC	7 cut(s)	492, 748, 893, 1139, 1383, 1508, 1542
DdeI	CTNAG	8 cut(s)	453, 471, 501, 582, 791, 885, 1689, 1949
DinI	GGCGCC	1 cut(s)	180
DpnI	GATC	1 cut(s)	1786
DpnII	GATC	1 cut(s)	1784
DriI	GACNNNNNGTC	1 cut(s)	1821
EaeI	YGGCCR	2 cut(s)	645, 1528
Eam1104I	CTCTTC	5 cut(s)	227, 714, 759, 1587, 1881
Eam1105I	GACNNNNNGTC	1 cut(s)	1821
EarI	CTCTTC	5 cut(s)	227, 714, 759, 1587, 1881
EciI	GGCGGA	2 cut(s)	644, 1649
Eco130I	CCWWGG	1 cut(s)	1525
Eco24I	GRGCYC	2 cut(s)	122, 1156
Eco47I	GGWCC	2 cut(s)	73, 851
Eco57I	CTGAAG	5 cut(s)	272, 587, 696, 1407, 1653
Eco88I	CYCGRG	2 cut(s)	277, 1149
EcoNI	CCTNNNNNAGG	1 cut(s)	500
EcoRII	CCWGG	3 cut(s)	522, 903, 1134
EcoT14I	CCWWGG	1 cut(s)	1525
EcoT38I	GRGCYC	2 cut(s)	122, 1156
EgeI	GGCGCC	1 cut(s)	180
EheI	GGCGCC	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	1525
FaeI	CATG	7 cut(s)	825, 873, 924, 967, 1480, 1529, 1838
FalI	AAGNNNNNCTT	4 cut(s)	248, 280, 1626, 1658
FaqI	GGGAC	4 cut(s)	59, 669, 1505, 1809
FatI	CATG	7 cut(s)	821, 869, 920, 963, 1476, 1525, 1834
FauI	CCCGC	2 cut(s)	75, 130
FauNDI	CATATG	2 cut(s)	543, 1607
FblI	GTMKAC	2 cut(s)	765, 1231
FokI	GGATG	3 cut(s)	764, 980, 1868
FriOI	GRGCYC	2 cut(s)	122, 1156
FspBI	CTAG	1 cut(s)	2013
FspI	TGCGCA	1 cut(s)	414
GlaI	GCGC	9 cut(s)	10, 16, 180, 194, 196, 283, 414, 446, 1558
GsuI	CTGGAG	2 cut(s)	1320, 1716
HaeII	RGCGCY	2 cut(s)	182, 1560
HaeIII	GGCC	3 cut(s)	423, 647, 1530
HapII	CCGG	6 cut(s)	6, 71, 140, 162, 176, 1531
HgaI	GACGC	2 cut(s)	167, 1159
HhaI	GCGC	9 cut(s)	11, 17, 181, 195, 197, 284, 415, 447, 1559
Hin1I	GRCGYC	2 cut(s)	159, 179
Hin1II	CATG	7 cut(s)	825, 873, 924, 967, 1480, 1529, 1838
Hin6I	GCGC	9 cut(s)	9, 15, 179, 193, 195, 282, 413, 445, 1557
HinP1I	GCGC	9 cut(s)	9, 15, 179, 193, 195, 282, 413, 445, 1557
HincII	GTYRAC	1 cut(s)	1232
HindII	GTYRAC	1 cut(s)	1232
HindIII	AAGCTT	1 cut(s)	1926
HinfI	GANTC	4 cut(s)	131, 808, 1280, 1493
HpaII	CCGG	6 cut(s)	6, 71, 140, 162, 176, 1531
HphI	GGTGA	2 cut(s)	160, 1810
Hpy166II	GTNNAC	4 cut(s)	578, 766, 950, 1232
Hpy188I	TCNGA	6 cut(s)	117, 136, 792, 886, 1128, 1938
Hpy188III	TCNNGA	3 cut(s)	698, 1244, 1733
Hpy8I	GTNNAC	4 cut(s)	578, 766, 950, 1232
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	7 cut(s)	250, 386, 508, 797, 1141, 1382, 1443
HpyCH4III	ACNGT	5 cut(s)	148, 466, 992, 1109, 1675
HpyCH4IV	ACGT	3 cut(s)	946, 1540, 1651
HpyF10VI	GCNNNNNNNGC	9 cut(s)	17, 23, 187, 201, 206, 865, 1438, 1453, 1581
HpyF3I	CTNAG	8 cut(s)	453, 471, 501, 582, 791, 885, 1689, 1949
HpySE526I	ACGT	3 cut(s)	946, 1540, 1651
Hsp92I	GRCGYC	2 cut(s)	159, 179
Hsp92II	CATG	7 cut(s)	825, 873, 924, 967, 1480, 1529, 1838
HspAI	GCGC	9 cut(s)	9, 15, 179, 193, 195, 282, 413, 445, 1557
KasI	GGCGCC	1 cut(s)	178
KpnI	GGTACC	1 cut(s)	1511
KroI	GCCGGC	1 cut(s)	161
KroNI	GCCGGC	1 cut(s)	163
KspI	CCGCGG	1 cut(s)	129
Kzo9I	GATC	1 cut(s)	1784
LmnI	GCTCC	4 cut(s)	206, 214, 631, 700
Lsp1109I	GCAGC	8 cut(s)	234, 550, 649, 712, 1261, 1354, 1504, 1825
LweI	GCATC	5 cut(s)	432, 603, 1354, 1408, 1846
MaeI	CTAG	1 cut(s)	2013
MaeII	ACGT	3 cut(s)	946, 1540, 1651
MaeIII	GTNAC	2 cut(s)	466, 1944
MalI	GATC	1 cut(s)	1786
MauBI	CGCGCGCG	1 cut(s)	193
MbiI	CCGCTC	3 cut(s)	204, 209, 217
MboI	GATC	1 cut(s)	1784
MfeI	CAATTG	1 cut(s)	227
MhlI	GDGCHC	3 cut(s)	122, 952, 1156
MluCI	AATT	8 cut(s)	227, 292, 618, 702, 1122, 1375, 1460, 1811
Mly113I	GGCGCC	1 cut(s)	179
MlyI	GAGTC	2 cut(s)	1274, 1487
MmeI	TCCRAC	1 cut(s)	829
MroNI	GCCGGC	1 cut(s)	161
MseI	TTAA	7 cut(s)	738, 1052, 1143, 1182, 1374, 1409, 1761
MslI	CAYNNNNRTG	1 cut(s)	1991
MspA1I	CMGCKG	2 cut(s)	128, 1808
MspI	CCGG	6 cut(s)	6, 71, 140, 162, 176, 1531
MspR9I	CCNGG	4 cut(s)	524, 905, 1136, 1532
MunI	CAATTG	1 cut(s)	227
MvaI	CCWGG	3 cut(s)	524, 905, 1136
MvnI	CGCG	6 cut(s)	15, 128, 193, 195, 197, 284
MwoI	GCNNNNNNNGC	9 cut(s)	17, 23, 187, 201, 206, 865, 1438, 1453, 1581
NaeI	GCCGGC	1 cut(s)	163
NarI	GGCGCC	1 cut(s)	179
NciI	CCSGG	1 cut(s)	1532
NcoI	CCATGG	1 cut(s)	1525
NdeI	CATATG	2 cut(s)	543, 1607
NdeII	GATC	1 cut(s)	1784
NgoMIV	GCCGGC	1 cut(s)	161
NlaIII	CATG	7 cut(s)	825, 873, 924, 967, 1480, 1529, 1838
NlaIV	GGNNCC	6 cut(s)	75, 174, 180, 315, 1509, 1768
NmuCI	GTSAC	1 cut(s)	466
NsbI	TGCGCA	1 cut(s)	414
NspI	RCATGY	2 cut(s)	825, 924
PaeR7I	CTCGAG	1 cut(s)	1149
PauI	GCGCGC	1 cut(s)	193
PciI	ACATGT	2 cut(s)	821, 920
PdiI	GCCGGC	1 cut(s)	163
PfeI	GAWTC	2 cut(s)	131, 808
PfoI	TCCNGGA	1 cut(s)	903
PleI	GAGTC	2 cut(s)	1274, 1487
PluTI	GGCGCC	1 cut(s)	182
PpsI	GAGTC	2 cut(s)	1274, 1487
PscI	ACATGT	2 cut(s)	821, 920
Psp1406I	AACGTT	1 cut(s)	1651
Psp6I	CCWGG	3 cut(s)	522, 903, 1134
PspGI	CCWGG	3 cut(s)	522, 903, 1134
PspN4I	GGNNCC	6 cut(s)	75, 174, 180, 315, 1509, 1768
PspPI	GGNCC	2 cut(s)	73, 851
PspXI	VCTCGAGB	1 cut(s)	1149
PstI	CTGCAG	2 cut(s)	667, 1843
PstNI	CAGNNNCTG	1 cut(s)	698
PteI	GCGCGC	1 cut(s)	193
RsaI	GTAC	7 cut(s)	493, 749, 894, 1140, 1384, 1509, 1543
RsaNI	GTAC	7 cut(s)	492, 748, 893, 1139, 1383, 1508, 1542
RseI	CAYNNNNRTG	1 cut(s)	1991
SacII	CCGCGG	1 cut(s)	129
SalI	GTCGAC	1 cut(s)	1230
SaqAI	TTAA	7 cut(s)	738, 1052, 1143, 1182, 1374, 1409, 1761
Sau3AI	GATC	1 cut(s)	1784
Sau96I	GGNCC	2 cut(s)	73, 851
ScaI	AGTACT	1 cut(s)	1384
SchI	GAGTC	2 cut(s)	1274, 1487
ScrFI	CCNGG	4 cut(s)	524, 905, 1136, 1532
SduI	GDGCHC	3 cut(s)	122, 952, 1156
SfaNI	GCATC	5 cut(s)	432, 603, 1354, 1408, 1846
SfcI	CTRYAG	3 cut(s)	663, 1699, 1839
SfoI	GGCGCC	1 cut(s)	180
Sfr274I	CTCGAG	1 cut(s)	1149
Sfr303I	CCGCGG	1 cut(s)	129
SgrBI	CCGCGG	1 cut(s)	129
SinI	GGWCC	2 cut(s)	73, 851
SlaI	CTCGAG	1 cut(s)	1149
SmiMI	CAYNNNNRTG	1 cut(s)	1991
SmlI	CTYRAG	2 cut(s)	1149, 1242
SmoI	CTYRAG	2 cut(s)	1149, 1242
Sse9I	AATT	8 cut(s)	227, 292, 618, 702, 1122, 1375, 1460, 1811
SspDI	GGCGCC	1 cut(s)	178
SspMI	CTAG	1 cut(s)	2013
StyD4I	CCNGG	4 cut(s)	522, 903, 1134, 1530
StyI	CCWWGG	1 cut(s)	1525
TaaI	ACNGT	5 cut(s)	148, 466, 992, 1109, 1675
TaiI	ACGT	3 cut(s)	949, 1543, 1654
TaqI	TCGA	6 cut(s)	608, 994, 1150, 1231, 1379, 1879
TasI	AATT	8 cut(s)	227, 292, 618, 702, 1122, 1375, 1460, 1811
TatI	WGTACW	3 cut(s)	747, 892, 1382
TauI	GCSGC	8 cut(s)	20, 23, 26, 128, 193, 200, 650, 1808
TfiI	GAWTC	2 cut(s)	131, 808
Tru1I	TTAA	7 cut(s)	738, 1052, 1143, 1182, 1374, 1409, 1761
Tru9I	TTAA	7 cut(s)	738, 1052, 1143, 1182, 1374, 1409, 1761
TscAI	CASTG	6 cut(s)	574, 657, 1047, 1503, 1627, 1680
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	8 cut(s)	247, 563, 662, 725, 1249, 1367, 1517, 1838
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	5 cut(s)	417, 1211, 1359, 1605, 2021
TspGWI	ACGGA	3 cut(s)	306, 395, 1021
TspRI	CASTG	6 cut(s)	574, 657, 1047, 1503, 1627, 1680
VneI	GTGCAC	1 cut(s)	948
VpaK11BI	GGWCC	2 cut(s)	73, 851
XagI	CCTNNNNNAGG	1 cut(s)	500
XapI	RAATTY	2 cut(s)	702, 1122
XceI	RCATGY	2 cut(s)	825, 924
XhoI	CTCGAG	1 cut(s)	1149
XmiI	GTMKAC	2 cut(s)	765, 1231
XspI	CTAG	1 cut(s)	2013
ZrmI	AGTACT	1 cut(s)	1384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.