Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010089

Physical Location & Seq

Genomic Coordinates Forward (+)

61409241 .. 61416660

Gene Structure 7420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG384800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2262 bp

ATGTCCTCCAATCGCCCCTCCGCCTTCGACGCTCTCATGTCCGGCGCACGCGCCGCCGCCGCCAAGAAAAAGCCCCAGCCCTCTTCCTCCCCCAAGAAGCGCAAAACCCTAAACCCCAGCCCTAGCTCCAATTCCGCGCCCAAGGAAAATCCCCAATTGCTATCCAAACCCGAAGACGCTGCTCCGAGCCCGGCCGCGGAATCCAAACCAGAAATGGAGGAAGAAGGTCAAGAACAGTCTGGCAATGGCGCCGAGCTGGCACCGACGGCGAAGAAAGTGTGCGCGGCGGCCGGAGTGGAGGAGCGGACGGCTCAATTGGCGAGTAGAATTGAGCTGTTGAAGAAGAAGGCCTTGGATTTTGACCCGAAGCTGATGGCGAATTGGGACAAGGGCGAAAGGGTTCCGTTTATGTTTCTTTCTTTGGTTTTCAATTTGATTTCCAAAGAGTCTGGGCGGATTGTGATTACGGATATAGTGTGTAATATGCTTAGGACTGTAATCTACACCACGCCGGAGGATTTGCTCCCGGTGGTTTATCTCTCGGCCAATAAGATTGCTCCGGCGCATGAGGGATTGGAGCTTGGCATTGGGGACTCTTCAATTATCAAGGCGCTTTCCCAGGCTTGTGGGAGGAGTGAAAAGGATGTTAAGAAGCGTTATGATGCAGAAGGAGACTTGGGTATTGTTGCACAGAAAAGCCGTTCATCCCAAACGATGATGCGCAAGCCTGAGCCATTGACTGTCAGCAAGGTTTTCAACACATTTCGCACCCTTGCTAAGGAATCTGGGAAGGATAGCCAGGAGAAGAAAAAGAACCATATGAAGGCACTTCTTGTTGCTGCCACTGACTGTGAACCTCTGTATTTGATCCGTTTGCTTCAGTCGAAGTTGCGAATTGGATTGGCAGAGCAGACTCTTTTGGCTGCACTGGGACAAGCTGCAGTCTATACTGAAGAACATTCTAAACCACCTCCTGAAATTCAGTCTCCTTTAGAAGAGGCTGCAAAGATTGTTAAACAAGTGTACTCTCTGCTTCCTGTTTACGATAAGATCATCCCTGCCCTTCTGAGTGGTGGTGTTTGGAATCTTCCAAAAACTTGTAGCTTTACTTTGGGTATCCCAGTTGGACCTATGCTTGCAAAGCCAAGTAAAGGGGTATCTGAGATTGTCCAAAAGTTTCAGGATACAGAATACACCTGTGAATACAAGTATGATGGAGAGCGTGCCCAGATACATTACATGGAGGATGGTACTGTTGAGATATACAGTCGAAATGCTGAACGAAACACCGGAAAGTTCCCTGATGTTGCGATTGCAGTGTCAAGGTTAAAGAAGTCGTCTGTAAAATCATTTGTTTTAGATTGTGAATTGGTTGCCTACGACCGTGCAAATAACAAAATTCTGCCCTTCCAGGTACTTAGCACCCGAGCCCGTAAAAATGTGAGCATGAGCGATATTAAGATTGAGGTCTGCATATTTGCATTTGATATGTTGTTTCTCAATGGTCGACCACTTACTCAAGAACAGCTCAAAGTTCGCAGAGAGTATCTTTATGACTCTTTTGAGGAAGAAGCTGGAATTTTTCAGTTTGCCACAGCAATAACCTCAAAGGATATTGATGAAATACAAACGTTTCTGGATGCCGCCGTTAATTCAAGTTCTGAGGGTTTAATAATCAAAACATTAAGCAAAGATGCTACGTACGAGCCTTCGAAGCGGTCACTTAACTGGCTGAAATTGAAGAAAGATTACATGGATAGTTTCGGGGACTCACTGGACTTGGTACCTATTGCTGCTTTCCATGGCCGGGGAAAACGTACAAGTGTCTATGGTGCTTTTCTCCTCGCTTGCTACGATAGCAATAATGAAGAGTTTCAAAGCATATGTAAAATAGGCACTGGATTTTCTGAAGCAGTGCTTGAAGAGCGTTCTGCCAGCCTGCGCGAAACAGTGATACCTAAACCTAAGACATACTATAGCTATGCAGAAACAAGTAATGCAAATACTCCAGATGTATGGTTTGAACCCACTCAGGTTTGGGAGGTGAAAGCTGCTGACTTGACTATTAGTCCTGTGTATCGTGCTGCAGTAGGCATAGTGGATTCTAACAAGGGTATTTCTCTTCGATTTCCACGTCTTGTTCGTGTTAGGGAAGATAAAAAACCAGAGGAAGCTTCATCATCTGAGCAGGTTGCTGATATGTATTCTGCTCAATCCAACAAAAGTTCTAACCACCAAGATGACAAGGAAGATGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000012 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006302 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016874 GO:0016886 GO:0022616 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0070013 GO:0070988 GO:0071704 GO:0080111 GO:0090304 GO:0140097 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03030 ko03410 ko03420 ko03430 map03030 map03410 map03420 map03430

Pfam Domains

Protein Families

DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_A_N

Protein Analysis

753

Amino Acids

83.33

Weight (kDa)

6.69

Isoelectric Point (pI)

51.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_ligase_A_N	PF04675	135 - 310	3.2e-51	DNA ligase N terminus
DNA_ligase_A_M	PF01068	377 - 581	2.3e-65	ATP dependent DNA ligase domain
DNA_ligase_A_C	PF04679	607 - 720	2.1e-22	ATP dependent DNA ligase C terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08130
fragaria_vesca	FvH4_3g30730 FvH4_3g30731 FvH4_3g30740
malus_domestica	MD03G1127000.v1.1 MD11G1147600.v1.1
prunus_persica	Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0056931
rosa_laevigata	RLG00000035140
rosa_multiflora	Rmu_sc0002035.1_g000008
rosa_roxburghii	Rroxscaffold_1G00023260 Rroxscaffold_1G00059860
rosa_rugosa	Rorug05G0304400
rosa_samantha	Rh5AG373800 Rh5BG384800 Rh5CG408100
rosa_wichuraiana	Rw5G035180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	722
Acc36I	ACCTGC	1 cut(s)	2179
Acc65I	GGTACC	1 cut(s)	1783
AccB1I	GGYRCC	3 cut(s)	248, 259, 1783
AccBSI	CCGCTC	1 cut(s)	304
AccI	GTMKAC	1 cut(s)	1507
AccII	CGCG	5 cut(s)	51, 137, 197, 284, 1944
AclI	AACGTT	1 cut(s)	1631
AclWI	GGATC	1 cut(s)	862
AcoI	YGGCCR	4 cut(s)	192, 288, 543, 1804
AcsI	RAATTY	3 cut(s)	978, 1398, 1578
AcuI	CTGAAG	3 cut(s)	863, 972, 1929
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	6 cut(s)	1025, 1252, 1416, 1703, 1785, 1819
AfiI	CCNNNNNNNGG	5 cut(s)	196, 778, 823, 1151, 1807
AgsI	TTSAA	9 cut(s)	340, 430, 600, 757, 1656, 1741, 1877, 1922, 2024
AhdI	GACNNNNNGTC	1 cut(s)	2067
AjiI	CACGTC	1 cut(s)	2135
AjnI	CCWGG	3 cut(s)	618, 798, 1410
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
Alw26I	GTCTC	2 cut(s)	666, 990
AlwI	GGATC	1 cut(s)	862
Ama87I	CYCGRG	1 cut(s)	1425
AoxI	GGCC	5 cut(s)	192, 288, 348, 543, 1804
ApeKI	GCWGC	8 cut(s)	179, 839, 923, 938, 1001, 1793, 2051, 2084
ApoI	RAATTY	3 cut(s)	978, 1398, 1578
Asp700I	GAANNNNTTC	2 cut(s)	399, 1872
Asp718I	GGTACC	1 cut(s)	1783
AspS9I	GGNCC	1 cut(s)	1127
AsuC2I	CCSGG	3 cut(s)	191, 527, 1808
AsuHPI	GGTGA	1 cut(s)	2056
AsuII	TTCGAA	1 cut(s)	1712
AvaI	CYCGRG	1 cut(s)	1425
AvaII	GGWCC	1 cut(s)	1127
BaeGI	GKGCMC	1 cut(s)	1228
BanI	GGYRCC	3 cut(s)	248, 259, 1783
BanII	GRGCYC	2 cut(s)	191, 1432
BarI	GAAGNNNNNNTAC	2 cut(s)	1733, 1765
BbsI	GAAGAC	1 cut(s)	180
BbvI	GCAGC	8 cut(s)	166, 826, 910, 925, 988, 1780, 2038, 2071
BccI	CCATC	3 cut(s)	367, 1208, 1241
BceAI	ACGGC	4 cut(s)	282, 324, 684, 1631
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BciT130I	CCWGG	3 cut(s)	620, 800, 1412
BciVI	GTATCC	2 cut(s)	1127, 1177
BcnI	CCSGG	3 cut(s)	191, 527, 1808
BcoDI	GTCTC	2 cut(s)	666, 990
BfaI	CTAG	2 cut(s)	123, 2260
BfmI	CTRYAG	3 cut(s)	939, 1975, 2085
BfoI	RGCGCY	2 cut(s)	252, 614
BfuAI	ACCTGC	1 cut(s)	2179
BfuI	GTATCC	2 cut(s)	1127, 1177
BglI	GCCNNNNNGGC	1 cut(s)	257
Bme1390I	CCNGG	6 cut(s)	191, 527, 620, 800, 1412, 1808
Bme18I	GGWCC	1 cut(s)	1127
BmeRI	GACNNNNNGTC	1 cut(s)	2067
BmeT110I	CYCGRG	1 cut(s)	1425
BmgBI	CACGTC	1 cut(s)	2135
BmgT120I	GGNCC	1 cut(s)	1127
BmiI	GGNNCC	4 cut(s)	250, 261, 402, 1785
BmrFI	CCNGG	6 cut(s)	191, 527, 620, 800, 1412, 1808
BmrI	ACTGGG	2 cut(s)	938, 1115
BmsI	GCATC	4 cut(s)	652, 708, 1630, 1684
BmuI	ACTGGG	2 cut(s)	938, 1115
BpiI	GAAGAC	1 cut(s)	180
BpmI	CTGGAG	1 cut(s)	1992
Bpu10I	CCTNAGC	3 cut(s)	488, 729, 777
Bpu14I	TTCGAA	1 cut(s)	1712
BpuEI	CTTGAG	1 cut(s)	1503
BpuMI	CCSGG	3 cut(s)	191, 527, 1808
BsaAI	YACGTR	1 cut(s)	1701
BsaHI	GRCGYC	1 cut(s)	249
BsaJI	CCNNGG	6 cut(s)	141, 195, 351, 618, 1801, 1807
BsaWI	WCCGGW	1 cut(s)	1289
Bsc4I	CCNNNNNNNGG	5 cut(s)	196, 778, 823, 1151, 1807
Bse1I	ACTGG	5 cut(s)	933, 1121, 1733, 1779, 1903
Bse3DI	GCAATG	1 cut(s)	250
BseBI	CCWGG	3 cut(s)	620, 800, 1412
BseDI	CCNNGG	6 cut(s)	141, 195, 351, 618, 1801, 1807
BseGI	GGATG	5 cut(s)	649, 704, 1053, 1252, 1645
BseLI	CCNNNNNNNGG	5 cut(s)	196, 778, 823, 1151, 1807
BseMI	GCAATG	1 cut(s)	250
BseMII	CTCAG	6 cut(s)	720, 1058, 1152, 1653, 2045, 2175
BseNI	ACTGG	5 cut(s)	933, 1121, 1733, 1779, 1903
BseRI	GAGGAG	3 cut(s)	314, 646, 1832
BseSI	GKGCMC	1 cut(s)	1228
BseX3I	CGGCCG	2 cut(s)	192, 288
BseXI	GCAGC	8 cut(s)	166, 826, 910, 925, 988, 1780, 2038, 2071
BseYI	CCCAGC	2 cut(s)	75, 116
BsgI	GTGCAG	1 cut(s)	909
Bsh1236I	CGCG	5 cut(s)	51, 137, 197, 284, 1944
Bsh1285I	CGRYCG	3 cut(s)	195, 291, 1384
BshFI	GGCC	5 cut(s)	194, 290, 350, 545, 1806
BshNI	GGYRCC	3 cut(s)	248, 259, 1783
BsiEI	CGRYCG	3 cut(s)	195, 291, 1384
BsiHKCI	CYCGRG	1 cut(s)	1425
BsiSI	CCGG	8 cut(s)	42, 191, 291, 512, 527, 560, 1290, 1807
BsiWI	CGTACG	1 cut(s)	1701
BslFI	GGGAC	4 cut(s)	398, 605, 945, 1781
BslI	CCNNNNNNNGG	5 cut(s)	196, 778, 823, 1151, 1807
BsmAI	GTCTC	2 cut(s)	666, 990
BsmFI	GGGAC	4 cut(s)	398, 605, 945, 1781
BsnI	GGCC	5 cut(s)	194, 290, 350, 545, 1806
BsoBI	CYCGRG	1 cut(s)	1425
Bsp119I	TTCGAA	1 cut(s)	1712
Bsp1286I	GDGCHC	3 cut(s)	191, 1228, 1432
Bsp143I	GATC	2 cut(s)	867, 1050
Bsp19I	CCATGG	1 cut(s)	1801
BspANI	GGCC	5 cut(s)	194, 290, 350, 545, 1806
BspCNI	CTCAG	6 cut(s)	721, 1059, 1153, 1654, 2044, 2176
BspFNI	CGCG	5 cut(s)	51, 137, 197, 284, 1944
BspLI	GGNNCC	4 cut(s)	250, 261, 402, 1785
BspMAI	CTGCAG	2 cut(s)	943, 2089
BspMI	ACCTGC	1 cut(s)	2179
BspPI	GGATC	1 cut(s)	862
BspQI	GCTCTTC	1 cut(s)	1917
BspT104I	TTCGAA	1 cut(s)	1712
BspT107I	GGYRCC	3 cut(s)	248, 259, 1783
BsrBI	CCGCTC	1 cut(s)	304
BsrDI	GCAATG	1 cut(s)	250
BsrI	ACTGG	5 cut(s)	933, 1121, 1733, 1779, 1903
BssECI	CCNNGG	6 cut(s)	141, 195, 351, 618, 1801, 1807
BssMI	GATC	2 cut(s)	867, 1050
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	3 cut(s)	141, 351, 1801
Bst2UI	CCWGG	3 cut(s)	620, 800, 1412
Bst4CI	ACNGT	8 cut(s)	237, 496, 742, 851, 1255, 1268, 1385, 1951
Bst6I	CTCTTC	6 cut(s)	88, 601, 990, 1863, 1917, 2127
BstACI	GRCGYC	1 cut(s)	249
BstBAI	YACGTR	1 cut(s)	1701
BstBI	TTCGAA	1 cut(s)	1712
BstC8I	GCNNGC	8 cut(s)	49, 258, 725, 1137, 1224, 1849, 1936, 1940
BstDSI	CCRYGG	2 cut(s)	195, 1801
BstENI	CCTNNNNNAGG	1 cut(s)	776
BstF5I	GGATG	5 cut(s)	649, 704, 1053, 1252, 1645
BstFNI	CGCG	5 cut(s)	51, 137, 197, 284, 1944
BstH2I	RGCGCY	2 cut(s)	252, 614
BstKTI	GATC	2 cut(s)	870, 1053
BstMAI	GTCTC	2 cut(s)	666, 990
BstMBI	GATC	2 cut(s)	867, 1050
BstMCI	CGRYCG	3 cut(s)	195, 291, 1384
BstNI	CCWGG	3 cut(s)	620, 800, 1412
BstSCI	CCNGG	6 cut(s)	189, 525, 618, 798, 1410, 1806
BstSFI	CTRYAG	3 cut(s)	939, 1975, 2085
BstSLI	GKGCMC	1 cut(s)	1228
BstSNI	TACGTA	1 cut(s)	1701
BstUI	CGCG	5 cut(s)	51, 137, 197, 284, 1944
BstV1I	GCAGC	8 cut(s)	166, 826, 910, 925, 988, 1780, 2038, 2071
BstV2I	GAAGAC	1 cut(s)	180
BstXI	CCANNNNNNTGG	2 cut(s)	626, 2016
BstZI	CGGCCG	2 cut(s)	192, 288
BsuI	GTATCC	2 cut(s)	1127, 1177
BsuRI	GGCC	5 cut(s)	194, 290, 350, 545, 1806
BtgI	CCRYGG	2 cut(s)	195, 1801
BtrI	CACGTC	1 cut(s)	2135
BtsCI	GGATG	5 cut(s)	649, 704, 1053, 1252, 1645
BtsI	GCAGTG	2 cut(s)	1323, 1920
BtsIMutI	CAGTG	7 cut(s)	843, 926, 1323, 1772, 1896, 1920, 1956
BveI	ACCTGC	1 cut(s)	2179
Cac8I	GCNNGC	8 cut(s)	49, 258, 725, 1137, 1224, 1849, 1936, 1940
Cfr13I	GGNCC	1 cut(s)	1127
Cfr42I	CCGCGG	1 cut(s)	198
CseI	GACGC	2 cut(s)	38, 185
Csp6I	GTAC	6 cut(s)	1024, 1251, 1415, 1702, 1784, 1818
CviAII	CATG	6 cut(s)	37, 566, 1240, 1447, 1753, 1802
CviQI	GTAC	6 cut(s)	1024, 1251, 1415, 1702, 1784, 1818
DinI	GGCGCC	1 cut(s)	250
DpnI	GATC	2 cut(s)	869, 1052
DpnII	GATC	2 cut(s)	867, 1050
DriI	GACNNNNNGTC	1 cut(s)	2067
EaeI	YGGCCR	4 cut(s)	192, 288, 543, 1804
EagI	CGGCCG	2 cut(s)	192, 288
Eam1104I	CTCTTC	6 cut(s)	88, 601, 990, 1863, 1917, 2127
Eam1105I	GACNNNNNGTC	1 cut(s)	2067
EarI	CTCTTC	6 cut(s)	88, 601, 990, 1863, 1917, 2127
EciI	GGCGGA	2 cut(s)	10, 469
EclXI	CGGCCG	2 cut(s)	192, 288
Eco105I	TACGTA	1 cut(s)	1701
Eco130I	CCWWGG	3 cut(s)	141, 351, 1801
Eco147I	AGGCCT	1 cut(s)	350
Eco24I	GRGCYC	2 cut(s)	191, 1432
Eco47I	GGWCC	1 cut(s)	1127
Eco52I	CGGCCG	2 cut(s)	192, 288
Eco57I	CTGAAG	3 cut(s)	863, 972, 1929
Eco88I	CYCGRG	1 cut(s)	1425
EcoNI	CCTNNNNNAGG	1 cut(s)	776
EcoRII	CCWGG	3 cut(s)	618, 798, 1410
EcoT14I	CCWWGG	3 cut(s)	141, 351, 1801
EcoT38I	GRGCYC	2 cut(s)	191, 1432
EgeI	GGCGCC	1 cut(s)	250
EheI	GGCGCC	1 cut(s)	250
ErhI	CCWWGG	3 cut(s)	141, 351, 1801
FaeI	CATG	6 cut(s)	40, 569, 1243, 1450, 1756, 1805
FalI	AAGNNNNNCTT	4 cut(s)	335, 367, 1902, 1934
FaqI	GGGAC	4 cut(s)	398, 605, 945, 1781
FatI	CATG	6 cut(s)	36, 565, 1239, 1446, 1752, 1801
FauNDI	CATATG	2 cut(s)	819, 1883
FblI	GTMKAC	1 cut(s)	1507
FokI	GGATG	5 cut(s)	656, 691, 1040, 1259, 1652
FriOI	GRGCYC	2 cut(s)	191, 1432
FspBI	CTAG	2 cut(s)	123, 2260
FspI	TGCGCA	1 cut(s)	722
GsaI	CCCAGC	2 cut(s)	79, 120
GsuI	CTGGAG	1 cut(s)	1992
HaeII	RGCGCY	2 cut(s)	252, 614
HaeIII	GGCC	5 cut(s)	194, 290, 350, 545, 1806
HapII	CCGG	8 cut(s)	42, 191, 291, 512, 527, 560, 1290, 1807
HgaI	GACGC	2 cut(s)	38, 185
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	6 cut(s)	40, 569, 1243, 1450, 1756, 1805
HincII	GTYRAC	1 cut(s)	1508
HindII	GTYRAC	1 cut(s)	1508
HindIII	AAGCTT	1 cut(s)	2172
HinfI	GANTC	9 cut(s)	200, 446, 593, 782, 913, 1084, 1556, 1769, 2102
HpaII	CCGG	8 cut(s)	42, 191, 291, 512, 527, 560, 1290, 1807
HphI	GGTGA	1 cut(s)	2056
Hpy166II	GTNNAC	4 cut(s)	854, 1024, 1042, 1508
Hpy188I	TCNGA	6 cut(s)	186, 1068, 1162, 1663, 1909, 2185
Hpy188III	TCNNGA	6 cut(s)	230, 974, 1181, 1520, 1637, 2009
Hpy8I	GTNNAC	4 cut(s)	854, 1024, 1042, 1508
Hpy99I	CGWCG	2 cut(s)	32, 268
HpyAV	CCTTC	9 cut(s)	34, 218, 340, 662, 784, 817, 1073, 1417, 1719
HpyCH4III	ACNGT	8 cut(s)	237, 496, 742, 851, 1255, 1268, 1385, 1951
HpyCH4IV	ACGT	4 cut(s)	1631, 1700, 1816, 2134
HpySE526I	ACGT	4 cut(s)	1631, 1700, 1816, 2134
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	6 cut(s)	40, 569, 1243, 1450, 1756, 1805
KasI	GGCGCC	1 cut(s)	248
KpnI	GGTACC	1 cut(s)	1787
KspI	CCGCGG	1 cut(s)	198
Kzo9I	GATC	2 cut(s)	867, 1050
LguI	GCTCTTC	1 cut(s)	1917
LmnI	GCTCC	6 cut(s)	131, 187, 301, 528, 562, 577
Lsp1109I	GCAGC	8 cut(s)	166, 826, 910, 925, 988, 1780, 2038, 2071
LweI	GCATC	4 cut(s)	652, 708, 1630, 1684
MaeI	CTAG	2 cut(s)	123, 2260
MaeII	ACGT	4 cut(s)	1631, 1700, 1816, 2134
MaeIII	GTNAC	1 cut(s)	1719
MalI	GATC	2 cut(s)	869, 1052
MbiI	CCGCTC	1 cut(s)	304
MboI	GATC	2 cut(s)	867, 1050
MfeI	CAATTG	2 cut(s)	155, 314
MhlI	GDGCHC	3 cut(s)	191, 1228, 1432
Mly113I	GGCGCC	1 cut(s)	249
MlyI	GAGTC	5 cut(s)	455, 587, 907, 1550, 1763
MmeI	TCCRAC	2 cut(s)	1105, 2241
MroXI	GAANNNNTTC	2 cut(s)	399, 1872
MseI	TTAA	8 cut(s)	648, 1014, 1328, 1458, 1650, 1670, 1685, 1725
MslI	CAYNNNNRTG	1 cut(s)	2238
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	8 cut(s)	42, 191, 291, 512, 527, 560, 1290, 1807
MspR9I	CCNGG	6 cut(s)	191, 527, 620, 800, 1412, 1808
MunI	CAATTG	2 cut(s)	155, 314
MvaI	CCWGG	3 cut(s)	620, 800, 1412
MvnI	CGCG	5 cut(s)	51, 137, 197, 284, 1944
NarI	GGCGCC	1 cut(s)	249
NciI	CCSGG	3 cut(s)	191, 527, 1808
NcoI	CCATGG	1 cut(s)	1801
NdeI	CATATG	2 cut(s)	819, 1883
NdeII	GATC	2 cut(s)	867, 1050
NlaIII	CATG	6 cut(s)	40, 569, 1243, 1450, 1756, 1805
NlaIV	GGNNCC	4 cut(s)	250, 261, 402, 1785
NmeAIII	GCCGAG	2 cut(s)	277, 521
NmuCI	GTSAC	1 cut(s)	1719
NsbI	TGCGCA	1 cut(s)	722
NspV	TTCGAA	1 cut(s)	1712
PceI	AGGCCT	1 cut(s)	350
PciSI	GCTCTTC	1 cut(s)	1917
PcsI	WCGNNNNNNNCGW	3 cut(s)	1851, 2131, 2140
PdmI	GAANNNNTTC	2 cut(s)	399, 1872
PfeI	GAWTC	4 cut(s)	200, 782, 1084, 2102
Pfl23II	CGTACG	1 cut(s)	1701
PleI	GAGTC	5 cut(s)	454, 587, 907, 1550, 1763
PluTI	GGCGCC	1 cut(s)	252
PpsI	GAGTC	5 cut(s)	454, 587, 907, 1550, 1763
Ppu21I	YACGTR	1 cut(s)	1701
Psp1406I	AACGTT	1 cut(s)	1631
Psp6I	CCWGG	3 cut(s)	618, 798, 1410
PspFI	CCCAGC	2 cut(s)	75, 116
PspGI	CCWGG	3 cut(s)	618, 798, 1410
PspLI	CGTACG	1 cut(s)	1701
PspN4I	GGNNCC	4 cut(s)	250, 261, 402, 1785
PspPI	GGNCC	1 cut(s)	1127
PstI	CTGCAG	2 cut(s)	943, 2089
RsaI	GTAC	6 cut(s)	1025, 1252, 1416, 1703, 1785, 1819
RsaNI	GTAC	6 cut(s)	1024, 1251, 1415, 1702, 1784, 1818
RseI	CAYNNNNRTG	1 cut(s)	2238
SacII	CCGCGG	1 cut(s)	198
SalI	GTCGAC	1 cut(s)	1506
SapI	GCTCTTC	1 cut(s)	1917
SaqAI	TTAA	8 cut(s)	648, 1014, 1328, 1458, 1650, 1670, 1685, 1725
Sau3AI	GATC	2 cut(s)	867, 1050
Sau96I	GGNCC	1 cut(s)	1127
SchI	GAGTC	5 cut(s)	455, 587, 907, 1550, 1763
ScrFI	CCNGG	6 cut(s)	191, 527, 620, 800, 1412, 1808
SduI	GDGCHC	3 cut(s)	191, 1228, 1432
SfaNI	GCATC	4 cut(s)	652, 708, 1630, 1684
SfcI	CTRYAG	3 cut(s)	939, 1975, 2085
SfoI	GGCGCC	1 cut(s)	250
Sfr303I	CCGCGG	1 cut(s)	198
SfuI	TTCGAA	1 cut(s)	1712
SgrBI	CCGCGG	1 cut(s)	198
SinI	GGWCC	1 cut(s)	1127
SmiMI	CAYNNNNRTG	1 cut(s)	2238
SmlI	CTYRAG	1 cut(s)	1518
SmoI	CTYRAG	1 cut(s)	1518
SnaBI	TACGTA	1 cut(s)	1701
SseBI	AGGCCT	1 cut(s)	350
SspDI	GGCGCC	1 cut(s)	248
SspMI	CTAG	2 cut(s)	123, 2260
StuI	AGGCCT	1 cut(s)	350
StyD4I	CCNGG	6 cut(s)	189, 525, 618, 798, 1410, 1806
StyI	CCWWGG	3 cut(s)	141, 351, 1801
TaaI	ACNGT	8 cut(s)	237, 496, 742, 851, 1255, 1268, 1385, 1951
TaiI	ACGT	4 cut(s)	1634, 1703, 1819, 2137
TaqI	TCGA	6 cut(s)	27, 884, 1270, 1507, 1712, 2125
TatI	WGTACW	1 cut(s)	1023
TauI	GCSGC	7 cut(s)	56, 59, 62, 197, 287, 290, 1646
TfiI	GAWTC	4 cut(s)	200, 782, 1084, 2102
Tru1I	TTAA	8 cut(s)	648, 1014, 1328, 1458, 1650, 1670, 1685, 1725
Tru9I	TTAA	8 cut(s)	648, 1014, 1328, 1458, 1650, 1670, 1685, 1725
TscAI	CASTG	7 cut(s)	850, 933, 1323, 1779, 1903, 1920, 1956
TseFI	GTSAC	1 cut(s)	1719
TseI	GCWGC	8 cut(s)	179, 839, 923, 938, 1001, 1793, 2051, 2084
Tsp45I	GTSAC	1 cut(s)	1719
TspDTI	ATGAA	5 cut(s)	693, 836, 1635, 1881, 2166
TspGWI	ACGGA	3 cut(s)	393, 482, 860
TspRI	CASTG	7 cut(s)	850, 933, 1323, 1779, 1903, 1920, 1956
VpaK11BI	GGWCC	1 cut(s)	1127
XagI	CCTNNNNNAGG	1 cut(s)	776
XapI	RAATTY	3 cut(s)	978, 1398, 1578
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
XmiI	GTMKAC	1 cut(s)	1507
XmnI	GAANNNNTTC	2 cut(s)	399, 1872
XspI	CTAG	2 cut(s)	123, 2260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.