Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0010089

Physical Location & Seq

Genomic Coordinates Forward (+)

63567015 .. 63575350

Gene Structure 8336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG373800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2472 bp

ATGTGGTTTCTTCACCAAGCCCTAGGAGTCTTGCTCTCTCAAGACTCGGTCTTTGTCCAAAAAAAAAAAAACACAGACACTTCCCTTATGCTCTCACTCTCACACCAACTGCGTTCTTGCTCTACTTGTCTTCGCCTACGCTCTACTCTCCGCTCTCTCCGTCCCTCCTCTCTCTTCCCCATTCCGATTTCCCCAAACCCTAATCGCGCCATGTCCTCCAATCGCCCCTCCGCCTTCGACGCTCTCATGTCCGGCGCACGCGCCGCCGCCGCCAAGAAAAAGCCCCAACCCTCTTCCTCCCCCAAGAAGCGCAAAACCCTAAACCCCAGCCCTAGCTCCAATTCCGCGCCCAAGGAGAATCCCCAATTGCTATCCAAACCCGAAGACGCTGCTCCGAGCCCGGCCGCGGAATCCAAACCAGAAATGGAGGAAGAAGGTCAAGAACAGTCTGGTAATGGCGCCGAGCTGGCACCGACGGCGAAGAAAGTGTGCGCGGCGGCCGGAGTGGAGGAGCGGACGGCTCAATTGGCGAGTAGAATCGAGCTGTTGAAGAAGAAGGCCTTGGATTTTGACCCGAAGCTGATGGCGAATTGGGACAAGGGCGAAAGGGTCCCGTTTATGTTTCTTTCTTTGGTTTTCAATTTGATTTCCAAAGAGTCTGGGCGGATTGTGATTACGGATATAGTGTGTAATATGCTTAGGACTGTAATCTACACCACGCCGGAGGATTTGCTCCCGGTGGTTTATCTCTCGGCCAATAAGATTGCTCCGGCGCATGAGGGATTGGAGCTTGGCATTGGGGACTCTTCAATTATCAAGGCGCTTTCGCAGGCTTGTGGGAGGAGTGAAAAGGATGTTAAGAAACGCTATGATGCAGAAGGAGACTTGGGTATTGTTGCACAGAAAAGCCGTTCATCCCAAACGATGATGCGCAAGCCTGAGCCATTGACTGTCAGCAAGGTTTTCAACACATTTCGCACCCTTGCTAAGGAATCTGGGAAGGATAGCCAGGAGAAGAAAAAGAACCATATGAAGGCACTTCTTGTTGCTGCCACTGACTGTGAACCTCTGTATTTGATCCGTTTGCTTCAGTCGAAGTTGCGAATTGGATTGGCAGAGCAGACTCTTTTGGCTGCACTGGGACAAGCTGCAGTCTATACTGAAGAACATTCTAAACCACCTCCTGAAATTCAGTCTCCTTTAGAAGAGGCTGCAAAGATTGTTAAACAAGTGTACTCTCTGCTTCCTGTTTACGATAAGATCATCCCTGCCCTTCTGAGTGGTGGTGTTTGGAATCTTCCAAAAACGTGTAGCTTTACTTTGGGTATCCCAGTTGGACCTATGCTTGCAAAGCCAAGTAAAGGGGTATCTGAGATTGTCCAAAAGTTTCAGGATACAGAATACACCTGTGAATACAAGTATGATGGAGAGCGTGCCCAGATACATTACATGGAGGATGGTACTGTTGAGATATACAGTCGAAATGCTGAACGAAACACCGGAAAGTTCCCTGATGTTGCAATTGCAGTGTCAAGGTTAAAGAAGTCGTCTGTAAAATCATTTGTTTTAGATTGTGAATTGGTTGCCTACGACCGTGCAAATAACAAAATTCTGCCCTTCCAGGTACTTAGCACCCGAGCCCGTAAAAATGTGAGCATGAGCGATATTAAGATTGAGGTCTGCATATTTGCTTTTGATATGTTGTTTCTTAATGGTCGACCACTTACTCAAGAACAGCTCAAAGTTCGCAGAGAGTATCTTTATGACTCTTTTGAGGAAGAAGCTGGAATTTTTCAGTTTGCCACAGCAATAACCTCAAAGGATATTGATGAAATACAAACGTTTCTTGATGCCGCCGTTAATTCAAGTTCTGAGGGTTTAATAATCAAAACATTAAGCAAAGATGCTACATACGAGCCTTCGAAGCGGTCACTTAACTGGCTGAAATTGAAGAAAGATTACATGGATAGTTTCGGGGACTCACTGGACTTGGTACCTATTGCTGCTTTCCATGGCCGGGGAAAACGTACAGGTGTCTATGGTGCTTTTCTCCTTGCTTGCTACGATAGCAATAATGAAGAGTTTCAAAGCATATGTAAAATAGGCACTGGATTTTCTGAAGCAGTGCTTGAAGAGCGTTCTGCCAGCCTGCGCGAAACAGTGATACCTAAACCTAAGACATACTATAGCTATGCAGAAACAAGTAATGCAAATACTCCAGATGTATGGTTTGAACCCACTCAGGTTTGGGAGGTGAAAGCTGCTGACTTGACTATTAGTCCTGTGTATCGTGCTGCAGTAGGCATAGTGGATTCTAACAAGGGTATTTCTCTTCGATTTCCACGTCTTGTTCGTGTTAGGGAAGATAAAAAACCAGAGGAAGCTTCATCATCTGAGCAGGTTGCTGATATGTATTCTGCTCAATCCAACAAAAGTTCTAACCACCAAGATGACAAGGAAGATGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000012 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006302 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016874 GO:0016886 GO:0022616 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0070013 GO:0070988 GO:0071704 GO:0080111 GO:0090304 GO:0140097 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03030 ko03410 ko03420 ko03430 map03030 map03410 map03420 map03430

Pfam Domains

Protein Families

DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_A_N

Protein Analysis

823

Amino Acids

91.21

Weight (kDa)

8.44

Isoelectric Point (pI)

53.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_ligase_A_N	PF04675	205 - 380	3.7e-51	DNA ligase N terminus
DNA_ligase_A_M	PF01068	447 - 651	2.7e-65	ATP dependent DNA ligase domain
DNA_ligase_A_C	PF04679	676 - 790	1.6e-22	ATP dependent DNA ligase C terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08130
fragaria_vesca	FvH4_3g30730 FvH4_3g30731 FvH4_3g30740
malus_domestica	MD03G1127000.v1.1 MD11G1147600.v1.1
prunus_persica	Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0056931
rosa_laevigata	RLG00000035140
rosa_multiflora	Rmu_sc0002035.1_g000008
rosa_roxburghii	Rroxscaffold_1G00023260 Rroxscaffold_1G00059860
rosa_rugosa	Rorug05G0304400
rosa_samantha	Rh5AG373800 Rh5BG384800 Rh5CG408100
rosa_wichuraiana	Rw5G035180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	932
Acc36I	ACCTGC	1 cut(s)	2389
Acc65I	GGTACC	1 cut(s)	1993
AccB1I	GGYRCC	3 cut(s)	458, 469, 1993
AccBSI	CCGCTC	2 cut(s)	153, 514
AccI	GTMKAC	1 cut(s)	1717
AccII	CGCG	6 cut(s)	207, 261, 347, 407, 494, 2154
AclI	AACGTT	1 cut(s)	1841
AclWI	GGATC	1 cut(s)	1072
AcoI	YGGCCR	4 cut(s)	402, 498, 753, 2014
AcsI	RAATTY	3 cut(s)	1188, 1608, 1788
AcuI	CTGAAG	3 cut(s)	1073, 1182, 2139
AcyI	GRCGYC	1 cut(s)	459
AfaI	GTAC	5 cut(s)	1235, 1462, 1626, 1995, 2029
AfiI	CCNNNNNNNGG	5 cut(s)	406, 988, 1033, 1361, 2017
AflIII	ACRYGT	1 cut(s)	1307
AgsI	TTSAA	9 cut(s)	550, 640, 810, 967, 1866, 1951, 2087, 2132, 2234
AhdI	GACNNNNNGTC	1 cut(s)	2277
AjiI	CACGTC	1 cut(s)	2345
AjnI	CCWGG	2 cut(s)	1008, 1620
AjuI	GAANNNNNNNTTGG	2 cut(s)	545, 577
Alw26I	GTCTC	2 cut(s)	876, 1200
AlwI	GGATC	1 cut(s)	1072
Ama87I	CYCGRG	1 cut(s)	1635
AoxI	GGCC	5 cut(s)	402, 498, 558, 753, 2014
ApeKI	GCWGC	8 cut(s)	389, 1049, 1133, 1148, 1211, 2003, 2261, 2294
ApoI	RAATTY	3 cut(s)	1188, 1608, 1788
ArsI	GACNNNNNNTTYG	2 cut(s)	35, 67
Asp700I	GAANNNNTTC	1 cut(s)	2082
Asp718I	GGTACC	1 cut(s)	1993
AspA2I	CCTAGG	1 cut(s)	22
AspS9I	GGNCC	2 cut(s)	610, 1337
AsuC2I	CCSGG	3 cut(s)	401, 737, 2018
AsuHPI	GGTGA	2 cut(s)	5, 2266
AsuII	TTCGAA	1 cut(s)	1922
AvaI	CYCGRG	1 cut(s)	1635
AvaII	GGWCC	2 cut(s)	610, 1337
AvrII	CCTAGG	1 cut(s)	22
BaeGI	GKGCMC	1 cut(s)	1438
BanI	GGYRCC	3 cut(s)	458, 469, 1993
BanII	GRGCYC	2 cut(s)	401, 1642
BarI	GAAGNNNNNNTAC	2 cut(s)	1943, 1975
BbsI	GAAGAC	2 cut(s)	122, 390
BbvI	GCAGC	8 cut(s)	376, 1036, 1120, 1135, 1198, 1990, 2248, 2281
BccI	CCATC	3 cut(s)	577, 1418, 1451
BceAI	ACGGC	4 cut(s)	492, 534, 894, 1841
BcgI	CGANNNNNNTGC	2 cut(s)	371, 405
BciT130I	CCWGG	2 cut(s)	1010, 1622
BciVI	GTATCC	2 cut(s)	1337, 1387
BcnI	CCSGG	3 cut(s)	401, 737, 2018
BcoDI	GTCTC	2 cut(s)	876, 1200
BfaI	CTAG	3 cut(s)	23, 333, 2470
BfmI	CTRYAG	3 cut(s)	1149, 2185, 2295
BfoI	RGCGCY	2 cut(s)	462, 824
BfuAI	ACCTGC	1 cut(s)	2389
BfuI	GTATCC	2 cut(s)	1337, 1387
BglI	GCCNNNNNGGC	1 cut(s)	467
BlnI	CCTAGG	1 cut(s)	22
Bme1390I	CCNGG	5 cut(s)	401, 737, 1010, 1622, 2018
Bme18I	GGWCC	2 cut(s)	610, 1337
BmeRI	GACNNNNNGTC	1 cut(s)	2277
BmeT110I	CYCGRG	1 cut(s)	1635
BmgBI	CACGTC	1 cut(s)	2345
BmgT120I	GGNCC	2 cut(s)	610, 1337
BmiI	GGNNCC	5 cut(s)	460, 471, 611, 612, 1995
BmrFI	CCNGG	5 cut(s)	401, 737, 1010, 1622, 2018
BmrI	ACTGGG	2 cut(s)	1148, 1325
BmsI	GCATC	4 cut(s)	862, 918, 1840, 1894
BmuI	ACTGGG	2 cut(s)	1148, 1325
BpiI	GAAGAC	2 cut(s)	122, 390
BplI	GAGNNNNNCTC	2 cut(s)	18, 50
BpmI	CTGGAG	1 cut(s)	2202
Bpu10I	CCTNAGC	3 cut(s)	698, 939, 987
Bpu14I	TTCGAA	1 cut(s)	1922
BpuEI	CTTGAG	2 cut(s)	24, 1713
BpuMI	CCSGG	3 cut(s)	401, 737, 2018
BsaHI	GRCGYC	1 cut(s)	459
BsaJI	CCNNGG	6 cut(s)	22, 351, 405, 561, 2011, 2017
BsaWI	WCCGGW	1 cut(s)	1499
Bsc4I	CCNNNNNNNGG	5 cut(s)	406, 988, 1033, 1361, 2017
Bse1I	ACTGG	5 cut(s)	1143, 1331, 1943, 1989, 2113
BseBI	CCWGG	2 cut(s)	1010, 1622
BseDI	CCNNGG	6 cut(s)	22, 351, 405, 561, 2011, 2017
BseGI	GGATG	4 cut(s)	859, 914, 1263, 1462
BseLI	CCNNNNNNNGG	5 cut(s)	406, 988, 1033, 1361, 2017
BseMII	CTCAG	6 cut(s)	930, 1268, 1362, 1863, 2255, 2385
BseNI	ACTGG	5 cut(s)	1143, 1331, 1943, 1989, 2113
BseRI	GAGGAG	3 cut(s)	157, 524, 856
BseSI	GKGCMC	1 cut(s)	1438
BseX3I	CGGCCG	2 cut(s)	402, 498
BseXI	GCAGC	8 cut(s)	376, 1036, 1120, 1135, 1198, 1990, 2248, 2281
BseYI	CCCAGC	1 cut(s)	326
BsgI	GTGCAG	1 cut(s)	1119
Bsh1236I	CGCG	6 cut(s)	207, 261, 347, 407, 494, 2154
Bsh1285I	CGRYCG	3 cut(s)	405, 501, 1594
BshFI	GGCC	5 cut(s)	404, 500, 560, 755, 2016
BshNI	GGYRCC	3 cut(s)	458, 469, 1993
BsiEI	CGRYCG	3 cut(s)	405, 501, 1594
BsiHKCI	CYCGRG	1 cut(s)	1635
BsiSI	CCGG	8 cut(s)	252, 401, 501, 722, 737, 770, 1500, 2017
BslFI	GGGAC	6 cut(s)	147, 596, 608, 815, 1155, 1991
BslI	CCNNNNNNNGG	5 cut(s)	406, 988, 1033, 1361, 2017
BsmAI	GTCTC	2 cut(s)	876, 1200
BsmFI	GGGAC	6 cut(s)	147, 596, 608, 815, 1155, 1991
BsnI	GGCC	5 cut(s)	404, 500, 560, 755, 2016
BsoBI	CYCGRG	1 cut(s)	1635
Bsp119I	TTCGAA	1 cut(s)	1922
Bsp1286I	GDGCHC	3 cut(s)	401, 1438, 1642
Bsp143I	GATC	2 cut(s)	1077, 1260
Bsp19I	CCATGG	1 cut(s)	2011
BspANI	GGCC	5 cut(s)	404, 500, 560, 755, 2016
BspCNI	CTCAG	6 cut(s)	931, 1269, 1363, 1864, 2254, 2386
BspFNI	CGCG	6 cut(s)	207, 261, 347, 407, 494, 2154
BspLI	GGNNCC	5 cut(s)	460, 471, 611, 612, 1995
BspMAI	CTGCAG	2 cut(s)	1153, 2299
BspMI	ACCTGC	1 cut(s)	2389
BspPI	GGATC	1 cut(s)	1072
BspQI	GCTCTTC	1 cut(s)	2127
BspT104I	TTCGAA	1 cut(s)	1922
BspT107I	GGYRCC	3 cut(s)	458, 469, 1993
BsrBI	CCGCTC	2 cut(s)	153, 514
BsrI	ACTGG	5 cut(s)	1143, 1331, 1943, 1989, 2113
BssECI	CCNNGG	6 cut(s)	22, 351, 405, 561, 2011, 2017
BssMI	GATC	2 cut(s)	1077, 1260
BssNI	GRCGYC	1 cut(s)	459
BssT1I	CCWWGG	4 cut(s)	22, 351, 561, 2011
Bst2UI	CCWGG	2 cut(s)	1010, 1622
Bst4CI	ACNGT	8 cut(s)	447, 706, 952, 1061, 1465, 1478, 1595, 2161
Bst6I	CTCTTC	7 cut(s)	179, 298, 811, 1200, 2073, 2127, 2337
BstACI	GRCGYC	1 cut(s)	459
BstBI	TTCGAA	1 cut(s)	1922
BstC8I	GCNNGC	9 cut(s)	259, 468, 831, 935, 1347, 1434, 2059, 2146, 2150
BstDSI	CCRYGG	2 cut(s)	405, 2011
BstENI	CCTNNNNNAGG	1 cut(s)	986
BstF5I	GGATG	4 cut(s)	859, 914, 1263, 1462
BstFNI	CGCG	6 cut(s)	207, 261, 347, 407, 494, 2154
BstH2I	RGCGCY	2 cut(s)	462, 824
BstKTI	GATC	2 cut(s)	1080, 1263
BstMAI	GTCTC	2 cut(s)	876, 1200
BstMBI	GATC	2 cut(s)	1077, 1260
BstMCI	CGRYCG	3 cut(s)	405, 501, 1594
BstNI	CCWGG	2 cut(s)	1010, 1622
BstSCI	CCNGG	5 cut(s)	399, 735, 1008, 1620, 2016
BstSFI	CTRYAG	3 cut(s)	1149, 2185, 2295
BstSLI	GKGCMC	1 cut(s)	1438
BstUI	CGCG	6 cut(s)	207, 261, 347, 407, 494, 2154
BstV1I	GCAGC	8 cut(s)	376, 1036, 1120, 1135, 1198, 1990, 2248, 2281
BstV2I	GAAGAC	2 cut(s)	122, 390
BstXI	CCANNNNNNTGG	1 cut(s)	2226
BstZI	CGGCCG	2 cut(s)	402, 498
BsuI	GTATCC	2 cut(s)	1337, 1387
BsuRI	GGCC	5 cut(s)	404, 500, 560, 755, 2016
BtgI	CCRYGG	2 cut(s)	405, 2011
BtrI	CACGTC	1 cut(s)	2345
BtsCI	GGATG	4 cut(s)	859, 914, 1263, 1462
BtsI	GCAGTG	2 cut(s)	1533, 2130
BtsIMutI	CAGTG	7 cut(s)	1053, 1136, 1533, 1982, 2106, 2130, 2166
BveI	ACCTGC	1 cut(s)	2389
Cac8I	GCNNGC	9 cut(s)	259, 468, 831, 935, 1347, 1434, 2059, 2146, 2150
Cfr13I	GGNCC	2 cut(s)	610, 1337
Cfr42I	CCGCGG	1 cut(s)	408
CseI	GACGC	2 cut(s)	248, 395
Csp6I	GTAC	5 cut(s)	1234, 1461, 1625, 1994, 2028
CviAII	CATG	7 cut(s)	211, 247, 776, 1450, 1657, 1963, 2012
CviQI	GTAC	5 cut(s)	1234, 1461, 1625, 1994, 2028
DinI	GGCGCC	1 cut(s)	460
DpnI	GATC	2 cut(s)	1079, 1262
DpnII	GATC	2 cut(s)	1077, 1260
DriI	GACNNNNNGTC	1 cut(s)	2277
EaeI	YGGCCR	4 cut(s)	402, 498, 753, 2014
EagI	CGGCCG	2 cut(s)	402, 498
Eam1104I	CTCTTC	7 cut(s)	179, 298, 811, 1200, 2073, 2127, 2337
Eam1105I	GACNNNNNGTC	1 cut(s)	2277
EarI	CTCTTC	7 cut(s)	179, 298, 811, 1200, 2073, 2127, 2337
EciI	GGCGGA	2 cut(s)	220, 679
EclXI	CGGCCG	2 cut(s)	402, 498
Eco130I	CCWWGG	4 cut(s)	22, 351, 561, 2011
Eco147I	AGGCCT	1 cut(s)	560
Eco24I	GRGCYC	2 cut(s)	401, 1642
Eco47I	GGWCC	2 cut(s)	610, 1337
Eco52I	CGGCCG	2 cut(s)	402, 498
Eco57I	CTGAAG	3 cut(s)	1073, 1182, 2139
Eco88I	CYCGRG	1 cut(s)	1635
EcoNI	CCTNNNNNAGG	1 cut(s)	986
EcoO109I	RGGNCCY	1 cut(s)	610
EcoRII	CCWGG	2 cut(s)	1008, 1620
EcoT14I	CCWWGG	4 cut(s)	22, 351, 561, 2011
EcoT38I	GRGCYC	2 cut(s)	401, 1642
EgeI	GGCGCC	1 cut(s)	460
EheI	GGCGCC	1 cut(s)	460
ErhI	CCWWGG	4 cut(s)	22, 351, 561, 2011
FaeI	CATG	7 cut(s)	214, 250, 779, 1453, 1660, 1966, 2015
FalI	AAGNNNNNCTT	4 cut(s)	545, 577, 2112, 2144
FaqI	GGGAC	6 cut(s)	147, 596, 608, 815, 1155, 1991
FatI	CATG	7 cut(s)	210, 246, 775, 1449, 1656, 1962, 2011
FauNDI	CATATG	2 cut(s)	1029, 2093
FblI	GTMKAC	1 cut(s)	1717
FokI	GGATG	4 cut(s)	866, 901, 1250, 1469
FriOI	GRGCYC	2 cut(s)	401, 1642
FspBI	CTAG	3 cut(s)	23, 333, 2470
FspI	TGCGCA	1 cut(s)	932
GsaI	CCCAGC	1 cut(s)	330
GsuI	CTGGAG	1 cut(s)	2202
HaeII	RGCGCY	2 cut(s)	462, 824
HaeIII	GGCC	5 cut(s)	404, 500, 560, 755, 2016
HapII	CCGG	8 cut(s)	252, 401, 501, 722, 737, 770, 1500, 2017
HgaI	GACGC	2 cut(s)	248, 395
Hin1I	GRCGYC	1 cut(s)	459
Hin1II	CATG	7 cut(s)	214, 250, 779, 1453, 1660, 1966, 2015
HincII	GTYRAC	1 cut(s)	1718
HindII	GTYRAC	1 cut(s)	1718
HindIII	AAGCTT	1 cut(s)	2382
HpaII	CCGG	8 cut(s)	252, 401, 501, 722, 737, 770, 1500, 2017
HphI	GGTGA	2 cut(s)	5, 2266
Hpy166II	GTNNAC	4 cut(s)	1064, 1234, 1252, 1718
Hpy188I	TCNGA	7 cut(s)	186, 396, 1278, 1372, 1873, 2119, 2395
Hpy188III	TCNNGA	7 cut(s)	41, 440, 1184, 1391, 1730, 1847, 2219
Hpy8I	GTNNAC	4 cut(s)	1064, 1234, 1252, 1718
Hpy99I	CGWCG	2 cut(s)	242, 478
HpyAV	CCTTC	9 cut(s)	244, 428, 550, 872, 994, 1027, 1283, 1627, 1929
HpyCH4III	ACNGT	8 cut(s)	447, 706, 952, 1061, 1465, 1478, 1595, 2161
HpyCH4IV	ACGT	4 cut(s)	1307, 1841, 2026, 2344
HpySE526I	ACGT	4 cut(s)	1307, 1841, 2026, 2344
Hsp92I	GRCGYC	1 cut(s)	459
Hsp92II	CATG	7 cut(s)	214, 250, 779, 1453, 1660, 1966, 2015
KasI	GGCGCC	1 cut(s)	458
KflI	GGGWCCC	1 cut(s)	610
KpnI	GGTACC	1 cut(s)	1997
KspI	CCGCGG	1 cut(s)	408
Kzo9I	GATC	2 cut(s)	1077, 1260
LguI	GCTCTTC	1 cut(s)	2127
LmnI	GCTCC	6 cut(s)	341, 397, 511, 738, 772, 787
Lsp1109I	GCAGC	8 cut(s)	376, 1036, 1120, 1135, 1198, 1990, 2248, 2281
LweI	GCATC	4 cut(s)	862, 918, 1840, 1894
MaeI	CTAG	3 cut(s)	23, 333, 2470
MaeII	ACGT	4 cut(s)	1307, 1841, 2026, 2344
MaeIII	GTNAC	1 cut(s)	1929
MalI	GATC	2 cut(s)	1079, 1262
MbiI	CCGCTC	2 cut(s)	153, 514
MboI	GATC	2 cut(s)	1077, 1260
MfeI	CAATTG	3 cut(s)	365, 524, 1521
MhlI	GDGCHC	3 cut(s)	401, 1438, 1642
Mly113I	GGCGCC	1 cut(s)	459
MlyI	GAGTC	7 cut(s)	36, 38, 665, 797, 1117, 1760, 1973
MmeI	TCCRAC	2 cut(s)	1315, 2451
MroXI	GAANNNNTTC	1 cut(s)	2082
MseI	TTAA	9 cut(s)	858, 1224, 1538, 1668, 1710, 1860, 1880, 1895, 1935
MslI	CAYNNNNRTG	1 cut(s)	2448
MspA1I	CMGCKG	1 cut(s)	407
MspI	CCGG	8 cut(s)	252, 401, 501, 722, 737, 770, 1500, 2017
MspR9I	CCNGG	5 cut(s)	401, 737, 1010, 1622, 2018
MunI	CAATTG	3 cut(s)	365, 524, 1521
MvaI	CCWGG	2 cut(s)	1010, 1622
MvnI	CGCG	6 cut(s)	207, 261, 347, 407, 494, 2154
NarI	GGCGCC	1 cut(s)	459
NciI	CCSGG	3 cut(s)	401, 737, 2018
NcoI	CCATGG	1 cut(s)	2011
NdeI	CATATG	2 cut(s)	1029, 2093
NdeII	GATC	2 cut(s)	1077, 1260
NlaIII	CATG	7 cut(s)	214, 250, 779, 1453, 1660, 1966, 2015
NlaIV	GGNNCC	5 cut(s)	460, 471, 611, 612, 1995
NmeAIII	GCCGAG	2 cut(s)	487, 731
NmuCI	GTSAC	1 cut(s)	1929
NsbI	TGCGCA	1 cut(s)	932
NspV	TTCGAA	1 cut(s)	1922
PceI	AGGCCT	1 cut(s)	560
PciSI	GCTCTTC	1 cut(s)	2127
PcsI	WCGNNNNNNNCGW	2 cut(s)	2341, 2350
PdmI	GAANNNNTTC	1 cut(s)	2082
PfeI	GAWTC	6 cut(s)	358, 410, 537, 992, 1294, 2312
PflFI	GACNNNGTC	1 cut(s)	47
PleI	GAGTC	7 cut(s)	35, 38, 664, 797, 1117, 1760, 1973
PluTI	GGCGCC	1 cut(s)	462
PpsI	GAGTC	7 cut(s)	35, 38, 664, 797, 1117, 1760, 1973
PpuMI	RGGWCCY	1 cut(s)	610
Psp1406I	AACGTT	1 cut(s)	1841
Psp5II	RGGWCCY	1 cut(s)	610
Psp6I	CCWGG	2 cut(s)	1008, 1620
PspFI	CCCAGC	1 cut(s)	326
PspGI	CCWGG	2 cut(s)	1008, 1620
PspN4I	GGNNCC	5 cut(s)	460, 471, 611, 612, 1995
PspPI	GGNCC	2 cut(s)	610, 1337
PspPPI	RGGWCCY	1 cut(s)	610
PstI	CTGCAG	2 cut(s)	1153, 2299
PsyI	GACNNNGTC	1 cut(s)	47
RsaI	GTAC	5 cut(s)	1235, 1462, 1626, 1995, 2029
RsaNI	GTAC	5 cut(s)	1234, 1461, 1625, 1994, 2028
RseI	CAYNNNNRTG	1 cut(s)	2448
SacII	CCGCGG	1 cut(s)	408
SalI	GTCGAC	1 cut(s)	1716
SapI	GCTCTTC	1 cut(s)	2127
SaqAI	TTAA	9 cut(s)	858, 1224, 1538, 1668, 1710, 1860, 1880, 1895, 1935
Sau3AI	GATC	2 cut(s)	1077, 1260
Sau96I	GGNCC	2 cut(s)	610, 1337
SchI	GAGTC	7 cut(s)	36, 38, 665, 797, 1117, 1760, 1973
ScrFI	CCNGG	5 cut(s)	401, 737, 1010, 1622, 2018
SduI	GDGCHC	3 cut(s)	401, 1438, 1642
SfaNI	GCATC	4 cut(s)	862, 918, 1840, 1894
SfcI	CTRYAG	3 cut(s)	1149, 2185, 2295
SfoI	GGCGCC	1 cut(s)	460
Sfr303I	CCGCGG	1 cut(s)	408
SfuI	TTCGAA	1 cut(s)	1922
SgrBI	CCGCGG	1 cut(s)	408
SinI	GGWCC	2 cut(s)	610, 1337
SmiMI	CAYNNNNRTG	1 cut(s)	2448
SmlI	CTYRAG	2 cut(s)	39, 1728
SmoI	CTYRAG	2 cut(s)	39, 1728
SseBI	AGGCCT	1 cut(s)	560
SspDI	GGCGCC	1 cut(s)	458
SspMI	CTAG	3 cut(s)	23, 333, 2470
StuI	AGGCCT	1 cut(s)	560
StyD4I	CCNGG	5 cut(s)	399, 735, 1008, 1620, 2016
StyI	CCWWGG	4 cut(s)	22, 351, 561, 2011
TaaI	ACNGT	8 cut(s)	447, 706, 952, 1061, 1465, 1478, 1595, 2161
TaiI	ACGT	4 cut(s)	1310, 1844, 2029, 2347
TaqI	TCGA	7 cut(s)	237, 540, 1094, 1480, 1717, 1922, 2335
TaqII	GACCGA	1 cut(s)	37
TatI	WGTACW	1 cut(s)	1233
TauI	GCSGC	7 cut(s)	266, 269, 272, 407, 497, 500, 1856
TfiI	GAWTC	6 cut(s)	358, 410, 537, 992, 1294, 2312
Tru1I	TTAA	9 cut(s)	858, 1224, 1538, 1668, 1710, 1860, 1880, 1895, 1935
Tru9I	TTAA	9 cut(s)	858, 1224, 1538, 1668, 1710, 1860, 1880, 1895, 1935
TscAI	CASTG	7 cut(s)	1060, 1143, 1533, 1989, 2113, 2130, 2166
TseFI	GTSAC	1 cut(s)	1929
TseI	GCWGC	8 cut(s)	389, 1049, 1133, 1148, 1211, 2003, 2261, 2294
Tsp45I	GTSAC	1 cut(s)	1929
TspDTI	ATGAA	5 cut(s)	903, 1046, 1845, 2091, 2376
TspGWI	ACGGA	3 cut(s)	149, 692, 1070
TspRI	CASTG	7 cut(s)	1060, 1143, 1533, 1989, 2113, 2130, 2166
Tth111I	GACNNNGTC	1 cut(s)	47
VpaK11BI	GGWCC	2 cut(s)	610, 1337
XagI	CCTNNNNNAGG	1 cut(s)	986
XapI	RAATTY	3 cut(s)	1188, 1608, 1788
XcmI	CCANNNNNNNNNTGG	1 cut(s)	421
XmaJI	CCTAGG	1 cut(s)	22
XmiI	GTMKAC	1 cut(s)	1717
XmnI	GAANNNNTTC	1 cut(s)	2082
XspI	CTAG	3 cut(s)	23, 333, 2470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.