Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010089

Physical Location & Seq

Genomic Coordinates Reverse (-)

81950180 .. 81956518

Gene Structure 6339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00059860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGAAACTTGGAGTAAAAACAATTTTGTTTTCTGTTTGGGGAAAAAGGAGGGTGTACCCGAACTCTTTTGGCTGATAGCATCTAGATCAAATGACAATTGCAACTGTAAGCATCTTTCTTGCTTGCAAAATACAAGATACACGGCGCCCTCGAATGATGTTCTTCGTGAGGCATCTGTTATGGTCAACCCCGGAATCCAAACCAGAAATGAAGAAAGAAGGCCAAGATCCGGTGCGGAGCGGGCACCAACAACGAAGAAACTGTGCGTAGTGGCTGAAGTTGAGGAGAAGATGGCTCAATTGGCGAGTATAATTGAGCTGTTGAAGAAGGCCTTGGATTTTGACCCGACACTAATGGGGAGTATAGTTGGAACACATGTCGATCTACGAAAGAGACACGTCGTGGTTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.38

Weight (kDa)

8.9

Isoelectric Point (pI)

45.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08130
fragaria_vesca	FvH4_3g30730 FvH4_3g30731 FvH4_3g30740
malus_domestica	MD03G1127000.v1.1 MD11G1147600.v1.1
prunus_persica	Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1 Prupe.6G112300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0056931
rosa_laevigata	RLG00000035140
rosa_multiflora	Rmu_sc0002035.1_g000008
rosa_roxburghii	Rroxscaffold_1G00023260 Rroxscaffold_1G00059860
rosa_rugosa	Rorug05G0304400
rosa_samantha	Rh5AG373800 Rh5BG384800 Rh5CG408100
rosa_wichuraiana	Rw5G035180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	145, 244
AccBSI	CCGCTC	1 cut(s)	241
AciI	CCGC	2 cut(s)	236, 241
AclWI	GGATC	1 cut(s)	222
AcuI	CTGAAG	1 cut(s)	297
AcyI	GRCGYC	1 cut(s)	146
AdeI	CACNNNGTG	1 cut(s)	403
AfaI	GTAC	1 cut(s)	57
AfiI	CCNNNNNNNGG	1 cut(s)	230
AflIII	ACRYGT	2 cut(s)	376, 397
AgsI	TTSAA	1 cut(s)	325
AjiI	CACGTC	1 cut(s)	400
AjuI	GAANNNNNNNTTGG	2 cut(s)	317, 349
AluBI	AGCT	1 cut(s)	319
AluI	AGCT	1 cut(s)	319
Alw26I	GTCTC	1 cut(s)	388
AlwI	GGATC	1 cut(s)	222
AoxI	GGCC	2 cut(s)	221, 330
AspLEI	GCGC	1 cut(s)	148
AsuC2I	CCSGG	1 cut(s)	192
BaeGI	GKGCMC	1 cut(s)	247
BanI	GGYRCC	2 cut(s)	145, 244
BccI	CCATC	1 cut(s)	286
BceAI	ACGGC	1 cut(s)	159
BcnI	CCSGG	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	1 cut(s)	84
BfoI	RGCGCY	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	192
BmgBI	CACGTC	1 cut(s)	400
BmiI	GGNNCC	2 cut(s)	147, 246
BmrFI	CCNGG	1 cut(s)	192
BmsI	GCATC	3 cut(s)	89, 121, 182
BpuMI	CCSGG	1 cut(s)	192
BsaHI	GRCGYC	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	190, 333
BsaWI	WCCGGW	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
BseDI	CCNNGG	2 cut(s)	190, 333
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseRI	GAGGAG	1 cut(s)	299
BseSI	GKGCMC	1 cut(s)	247
BshFI	GGCC	2 cut(s)	223, 332
BshNI	GGYRCC	2 cut(s)	145, 244
BsiSI	CCGG	2 cut(s)	192, 231
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	388
BsnI	GGCC	2 cut(s)	223, 332
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	3 cut(s)	86, 227, 382
BspACI	CCGC	2 cut(s)	236, 241
BspANI	GGCC	2 cut(s)	223, 332
BspLI	GGNNCC	2 cut(s)	147, 246
BspPI	GGATC	1 cut(s)	222
BspT107I	GGYRCC	2 cut(s)	145, 244
BsrBI	CCGCTC	1 cut(s)	241
BssECI	CCNNGG	2 cut(s)	190, 333
BssMI	GATC	3 cut(s)	86, 227, 382
BssNI	GRCGYC	1 cut(s)	146
BssT1I	CCWWGG	1 cut(s)	333
Bst4CI	ACNGT	2 cut(s)	107, 264
BstACI	GRCGYC	1 cut(s)	146
BstC8I	GCNNGC	2 cut(s)	125, 243
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	3 cut(s)	89, 230, 385
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	3 cut(s)	86, 227, 382
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 302
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	190
BstSLI	GKGCMC	1 cut(s)	247
BstX2I	RGATCY	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	227
BsuRI	GGCC	2 cut(s)	223, 332
BtrI	CACGTC	1 cut(s)	400
Cac8I	GCNNGC	2 cut(s)	125, 243
CfoI	GCGC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	56
CviAII	CATG	1 cut(s)	377
CviJI	RGCY	6 cut(s)	73, 223, 275, 296, 319, 332
CviKI_1	RGCY	6 cut(s)	73, 223, 275, 296, 319, 332
CviQI	GTAC	1 cut(s)	56
DinI	GGCGCC	1 cut(s)	147
DpnI	GATC	3 cut(s)	88, 229, 384
DpnII	GATC	3 cut(s)	86, 227, 382
DraIII	CACNNNGTG	1 cut(s)	403
Eco130I	CCWWGG	1 cut(s)	333
Eco147I	AGGCCT	1 cut(s)	332
Eco57I	CTGAAG	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	333
EgeI	GGCGCC	1 cut(s)	147
EheI	GGCGCC	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	1 cut(s)	380
FaiI	YATR	4 cut(s)	182, 311, 365, 378
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FatI	CATG	1 cut(s)	376
FauI	CCCGC	1 cut(s)	234
FspBI	CTAG	1 cut(s)	84
GlaI	GCGC	1 cut(s)	147
HaeII	RGCGCY	1 cut(s)	149
HaeIII	GGCC	2 cut(s)	223, 332
HapII	CCGG	2 cut(s)	192, 231
HhaI	GCGC	1 cut(s)	148
Hin1I	GRCGYC	1 cut(s)	146
Hin1II	CATG	1 cut(s)	380
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	1 cut(s)	195
HpaII	CCGG	2 cut(s)	192, 231
Hpy166II	GTNNAC	2 cut(s)	56, 187
Hpy188III	TCNNGA	2 cut(s)	84, 167
Hpy8I	GTNNAC	2 cut(s)	56, 187
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	2 cut(s)	213, 322
HpyCH4III	ACNGT	2 cut(s)	107, 264
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	2 cut(s)	102, 127
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 302
HpySE526I	ACGT	1 cut(s)	399
Hsp92I	GRCGYC	1 cut(s)	146
Hsp92II	CATG	1 cut(s)	380
HspAI	GCGC	1 cut(s)	146
KasI	GGCGCC	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	86, 227, 382
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	3 cut(s)	205, 217, 244
LweI	GCATC	3 cut(s)	89, 121, 182
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	1 cut(s)	399
MalI	GATC	3 cut(s)	88, 229, 384
MbiI	CCGCTC	1 cut(s)	241
MboI	GATC	3 cut(s)	86, 227, 382
MboII	GAAGA	5 cut(s)	155, 224, 268, 301, 337
MfeI	CAATTG	2 cut(s)	97, 299
MflI	RGATCY	1 cut(s)	227
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	4 cut(s)	22, 97, 299, 312
Mly113I	GGCGCC	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	349
MnlI	CCTC	4 cut(s)	43, 160, 163, 277
MspI	CCGG	2 cut(s)	192, 231
MspR9I	CCNGG	1 cut(s)	192
MunI	CAATTG	2 cut(s)	97, 299
MwoI	GCNNNNNNNGC	2 cut(s)	242, 302
NarI	GGCGCC	1 cut(s)	146
NciI	CCSGG	1 cut(s)	192
NdeII	GATC	3 cut(s)	86, 227, 382
NlaIII	CATG	1 cut(s)	380
NlaIV	GGNNCC	2 cut(s)	147, 246
NspI	RCATGY	1 cut(s)	380
PceI	AGGCCT	1 cut(s)	332
PciI	ACATGT	1 cut(s)	376
PcsI	WCGNNNNNNNCGW	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	195
PluTI	GGCGCC	1 cut(s)	149
PscI	ACATGT	1 cut(s)	376
PspN4I	GGNNCC	2 cut(s)	147, 246
PsuI	RGATCY	1 cut(s)	227
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
Sau3AI	GATC	3 cut(s)	86, 227, 382
ScrFI	CCNGG	1 cut(s)	192
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	2 cut(s)	321, 402
SfaNI	GCATC	3 cut(s)	89, 121, 182
SfoI	GGCGCC	1 cut(s)	147
Sse9I	AATT	4 cut(s)	22, 97, 299, 312
SseBI	AGGCCT	1 cut(s)	332
SsiI	CCGC	2 cut(s)	236, 241
SspDI	GGCGCC	1 cut(s)	145
SspMI	CTAG	1 cut(s)	84
StuI	AGGCCT	1 cut(s)	332
StyD4I	CCNGG	1 cut(s)	190
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	2 cut(s)	107, 264
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	2 cut(s)	152, 381
TasI	AATT	4 cut(s)	22, 97, 299, 312
TfiI	GAWTC	1 cut(s)	195
TspDTI	ATGAA	1 cut(s)	225
XbaI	TCTAGA	1 cut(s)	83
XceI	RCATGY	1 cut(s)	380
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.