Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012841

Physical Location & Seq

Genomic Coordinates Reverse (-)

27792761 .. 27795569

Gene Structure 2809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g32531.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGGAATCGGAAGCAGTAGCGCCGGTCGCCGGAGGCACCGGCCGCCTCCGCCTCCGGCTATTCCACAACCCGAAAACGGTGGGGGTAGATACCCTTACCCTGGTGCCTCACCACCTTACCCGCCTCAATATCCAAACGAACCAATCCCCAATCCGGGGCAGTTCCACCAATACCCCACCGGACCTAATCCAAGTCATGCTCAGTTTTACCACTACTCCGCATTCTACCCACCGCCGCCGCCGGTGCCGGGGGTGTACCACCGCGGAGGGGCGTTCATGGGCCCACCTCCTCCGCCGGGGAATTGGGTTCCGGGGCAGTACCCTTGTGGTGCTCCCCCGCCTCTTCCGGGTGCTCCCTTTGTTGAGCATCAGAAGACTGTCACTATTAAGAATGATGTGAATATCAAGAAGGATTCTTTGAGGGTCGAGCCGGATGAGGAGAATCCTGGCAAGTTTGTTGTTGCCTTCACTTTTGATGCCGCCGCACCTGGAAGCATTACCGTCATGTTTTTTGCTAAAGAAGATGCAGACTTTAACTTGATAGCGACAAAGGAGAGCTTGCTTAGCCCTGTCAAAGTGCCGTTCGACAAAGGTCTTGGTCAAAAGTTTAGACAACCTTGCGGAACTGGGATCAACTTTTCATTTTTTGAGGAGATAGGGTTGACAAAAGAGGAGGACGCAGAAGTTTATCCTCTTGTGGTGAAGGCTGAAGCACACACCACAAATGATGGTGAACGGGAATCAGATGGAAATTCTGCTGGAAACTCTCAGATCACACAGGCAGTGTTTGAAAAGAAGGAGAATGGTGAGTACAAAGTGCGGGTGATGAAACAGATACTATGGGTGGATAATATGAGGTATGAGCTGCAGGAGATCTATGGTATTGGGAATGCAGTTGAAGGTGAACAAAATGATAATGAAGCGGGAAAAGAATGTATAATTTGCTTGTCAGAACCTCGAGATACAACTGTCCTCCCTTGCCGGCATATGTGCATGTGCAGTGGTTGTGCCAAGGTTTTGAGGTTCCAGACAAATAGATGCCCTGTCTGTAGGCAACCAGTTGAACGCCTCTTGGAAATCAAGGTGAACAATGCAGCTGATGGTGCTTTAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008277 GO:0008589 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0023057 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043949 GO:0043951 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045744 GO:0045879 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

372

Amino Acids

40.65

Weight (kDa)

5.83

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNF157-like_N	PF26192	133 - 289	1.9e-67	RNF157-like N-terminal domain
zf-C3HC4_3	PF13920	310 - 356	5e-16	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	311 - 351	1.8e-06	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53410
fragaria_vesca	FvH4_3g32531 FvH4_3g32531
malus_domestica	MD03G1116400.v1.1 MD11G1134600.v1.1
prunus_persica	Prupe.6G100500_v2.0.a1
pyrus_communis	pycom11g11170
rosa_chinensis	RchiOBHm_Chr5g0059601
rosa_laevigata	RLG00000035307 RLG00000035309
rosa_multiflora	Rmu_ssc0000488.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021010
rosa_rugosa	Rorug05G0323600
rosa_samantha	Rh5AG388600 Rh5BG400200 Rh5CG424500 Rh5DG416500
rosa_wichuraiana	Rw5G036590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	36, 104, 244
AccII	CGCG	1 cut(s)	264
AclWI	GGATC	1 cut(s)	638
AcoI	YGGCCR	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	751
AcuI	CTGAAG	1 cut(s)	729
AfaI	GTAC	3 cut(s)	257, 320, 812
AgsI	TTSAA	3 cut(s)	791, 899, 1064
AjnI	CCWGG	3 cut(s)	100, 445, 487
AluBI	AGCT	3 cut(s)	558, 865, 1097
AluI	AGCT	3 cut(s)	558, 865, 1097
Alw21I	GWGCWC	2 cut(s)	334, 355
AlwI	GGATC	1 cut(s)	638
Ama87I	CYCGRG	1 cut(s)	957
AoxI	GGCC	2 cut(s)	41, 280
ApaI	GGGCCC	1 cut(s)	284
ApeKI	GCWGC	2 cut(s)	865, 1094
ApoI	RAATTY	1 cut(s)	751
AspLEI	GCGC	1 cut(s)	23
AspS9I	GGNCC	3 cut(s)	182, 280, 281
AsuC2I	CCSGG	5 cut(s)	156, 249, 297, 312, 348
AsuHPI	GGTGA	7 cut(s)	102, 712, 743, 818, 835, 914, 1096
AvaI	CYCGRG	1 cut(s)	957
AvaII	GGWCC	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	284
BaeI	ACNNNNGTAYC	2 cut(s)	954, 987
BanI	GGYRCC	3 cut(s)	36, 104, 244
BanII	GRGCYC	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	380
Bbv12I	GWGCWC	2 cut(s)	334, 355
BbvI	GCAGC	2 cut(s)	852, 1106
BccI	CCATC	3 cut(s)	722, 740, 1094
BceAI	ACGGC	1 cut(s)	565
BciT130I	CCWGG	3 cut(s)	102, 447, 489
BcnI	CCSGG	5 cut(s)	156, 249, 297, 312, 348
BfmI	CTRYAG	2 cut(s)	866, 1048
BfoI	RGCGCY	1 cut(s)	24
BglII	AGATCT	1 cut(s)	873
BisI	GCNGC	7 cut(s)	44, 236, 239, 480, 483, 866, 1095
BlpI	GCTNAGC	1 cut(s)	563
BlsI	GCNGC	7 cut(s)	45, 237, 240, 481, 484, 867, 1096
Bme1390I	CCNGG	8 cut(s)	102, 156, 249, 297, 312, 348, 447, 489
Bme18I	GGWCC	1 cut(s)	182
BmeT110I	CYCGRG	1 cut(s)	957
BmgT120I	GGNCC	3 cut(s)	182, 280, 281
BmiI	GGNNCC	6 cut(s)	38, 106, 246, 282, 309, 1025
BmrFI	CCNGG	8 cut(s)	102, 156, 249, 297, 312, 348, 447, 489
BmrI	ACTGGG	1 cut(s)	636
BmsI	GCATC	4 cut(s)	376, 466, 514, 1028
BmuI	ACTGGG	1 cut(s)	636
BoxI	GACNNNNGTC	1 cut(s)	591
BpiI	GAAGAC	1 cut(s)	380
Bpu1102I	GCTNAGC	1 cut(s)	563
BpuMI	CCSGG	5 cut(s)	156, 249, 297, 312, 348
BsaJI	CCNNGG	7 cut(s)	100, 155, 248, 262, 296, 311, 1011
BsaWI	WCCGGW	1 cut(s)	179
BsaXI	ACNNNNNCTCC	4 cut(s)	200, 230, 644, 674
Bse118I	RCCGGY	4 cut(s)	23, 39, 241, 981
Bse1I	ACTGG	2 cut(s)	631, 1058
BseBI	CCWGG	3 cut(s)	102, 447, 489
BseDI	CCNNGG	7 cut(s)	100, 155, 248, 262, 296, 311, 1011
BseGI	GGATG	1 cut(s)	439
BseMII	CTCAG	2 cut(s)	215, 782
BseNI	ACTGG	2 cut(s)	631, 1058
BseRI	GAGGAG	4 cut(s)	279, 452, 665, 686
BseSI	GKGCMC	1 cut(s)	284
BseX3I	CGGCCG	1 cut(s)	41
BseXI	GCAGC	2 cut(s)	852, 1106
BsgI	GTGCAG	1 cut(s)	1018
Bsh1236I	CGCG	1 cut(s)	264
Bsh1285I	CGRYCG	2 cut(s)	28, 44
BshFI	GGCC	2 cut(s)	43, 282
BshNI	GGYRCC	3 cut(s)	36, 104, 244
BsiEI	CGRYCG	2 cut(s)	28, 44
BsiHKAI	GWGCWC	2 cut(s)	334, 355
BsiHKCI	CYCGRG	1 cut(s)	957
BsmI	GAATGC	2 cut(s)	221, 895
BsnI	GGCC	2 cut(s)	43, 282
BsoBI	CYCGRG	1 cut(s)	957
Bsp120I	GGGCCC	1 cut(s)	280
Bsp1286I	GDGCHC	3 cut(s)	284, 334, 355
Bsp143I	GATC	3 cut(s)	630, 771, 873
Bsp1720I	GCTNAGC	1 cut(s)	563
BspANI	GGCC	2 cut(s)	43, 282
BspCNI	CTCAG	2 cut(s)	214, 781
BspFNI	CGCG	1 cut(s)	264
BspLI	GGNNCC	6 cut(s)	38, 106, 246, 282, 309, 1025
BspMAI	CTGCAG	1 cut(s)	870
BspPI	GGATC	1 cut(s)	638
BspT107I	GGYRCC	3 cut(s)	36, 104, 244
BsrFI	RCCGGY	4 cut(s)	23, 39, 241, 981
BsrI	ACTGG	2 cut(s)	631, 1058
BssAI	RCCGGY	4 cut(s)	23, 39, 241, 981
BssECI	CCNNGG	7 cut(s)	100, 155, 248, 262, 296, 311, 1011
BssMI	GATC	3 cut(s)	630, 771, 873
BssT1I	CCWWGG	1 cut(s)	1011
Bst2UI	CCWGG	3 cut(s)	102, 447, 489
Bst4CI	ACNGT	4 cut(s)	80, 379, 502, 970
Bst6I	CTCTTC	1 cut(s)	348
BstC8I	GCNNGC	2 cut(s)	560, 983
BstDEI	CTNAG	3 cut(s)	201, 563, 768
BstDSI	CCRYGG	1 cut(s)	262
BstF5I	GGATG	1 cut(s)	439
BstFNI	CGCG	1 cut(s)	264
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	3 cut(s)	633, 774, 876
BstMBI	GATC	3 cut(s)	630, 771, 873
BstMCI	CGRYCG	2 cut(s)	28, 44
BstMWI	GCNNNNNNNGC	6 cut(s)	27, 43, 49, 244, 564, 1103
BstNI	CCWGG	3 cut(s)	102, 447, 489
BstNSI	RCATGY	1 cut(s)	997
BstPAI	GACNNNNGTC	1 cut(s)	591
BstSCI	CCNGG	8 cut(s)	100, 154, 247, 295, 310, 346, 445, 487
BstSFI	CTRYAG	2 cut(s)	866, 1048
BstSLI	GKGCMC	1 cut(s)	284
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	2 cut(s)	852, 1106
BstV2I	GAAGAC	1 cut(s)	380
BstX2I	RGATCY	1 cut(s)	873
BstYI	RGATCY	1 cut(s)	873
BstZI	CGGCCG	1 cut(s)	41
BsuRI	GGCC	2 cut(s)	43, 282
BtgI	CCRYGG	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	439
BtsI	GCAGTG	2 cut(s)	789, 1006
BtsIMutI	CAGTG	2 cut(s)	789, 1006
Cac8I	GCNNGC	2 cut(s)	560, 983
CfoI	GCGC	1 cut(s)	23
Cfr10I	RCCGGY	4 cut(s)	23, 39, 241, 981
Cfr13I	GGNCC	3 cut(s)	182, 280, 281
Cfr42I	CCGCGG	1 cut(s)	265
CseI	GACGC	1 cut(s)	686
Csp6I	GTAC	3 cut(s)	256, 319, 811
CviAII	CATG	4 cut(s)	197, 277, 505, 994
CviJI	RGCY	9 cut(s)	43, 59, 282, 430, 558, 567, 707, 865, 1097
CviKI_1	RGCY	9 cut(s)	43, 59, 282, 430, 558, 567, 707, 865, 1097
CviQI	GTAC	3 cut(s)	256, 319, 811
DdeI	CTNAG	3 cut(s)	201, 563, 768
DpnI	GATC	3 cut(s)	632, 773, 875
DpnII	GATC	3 cut(s)	630, 771, 873
EaeI	YGGCCR	1 cut(s)	41
EagI	CGGCCG	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
EciI	GGCGGA	2 cut(s)	39, 282
EclXI	CGGCCG	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	1011
Eco24I	GRGCYC	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	182
Eco52I	CGGCCG	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	729
Eco88I	CYCGRG	1 cut(s)	957
EcoRII	CCWGG	3 cut(s)	100, 445, 487
EcoT14I	CCWWGG	1 cut(s)	1011
EcoT38I	GRGCYC	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	1011
FaeI	CATG	4 cut(s)	200, 280, 508, 997
FalI	AAGNNNNNCTT	2 cut(s)	542, 574
FatI	CATG	4 cut(s)	196, 276, 504, 993
FauI	CCCGC	4 cut(s)	129, 345, 813, 916
FauNDI	CATATG	1 cut(s)	987
Fnu4HI	GCNGC	7 cut(s)	44, 236, 239, 480, 483, 866, 1095
FokI	GGATG	1 cut(s)	446
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	7 cut(s)	44, 236, 239, 480, 483, 866, 1095
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	7 cut(s)	44, 236, 239, 480, 483, 866, 1095
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	2 cut(s)	43, 282
HgaI	GACGC	1 cut(s)	686
HhaI	GCGC	1 cut(s)	23
Hin1II	CATG	4 cut(s)	200, 280, 508, 997
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HincII	GTYRAC	1 cut(s)	663
HindII	GTYRAC	1 cut(s)	663
HinfI	GANTC	4 cut(s)	6, 413, 442, 740
HphI	GGTGA	7 cut(s)	102, 712, 743, 818, 835, 914, 1096
Hpy166II	GTNNAC	5 cut(s)	256, 663, 734, 905, 1087
Hpy188I	TCNGA	5 cut(s)	11, 372, 745, 771, 952
Hpy188III	TCNNGA	3 cut(s)	406, 959, 1027
Hpy8I	GTNNAC	5 cut(s)	256, 663, 734, 905, 1087
HpyAV	CCTTC	5 cut(s)	403, 475, 697, 790, 893
HpyCH4III	ACNGT	4 cut(s)	80, 379, 502, 970
HpyCH4V	TGCA	6 cut(s)	527, 868, 893, 993, 999, 1094
HpyF10VI	GCNNNNNNNGC	6 cut(s)	27, 43, 49, 244, 564, 1103
HpyF3I	CTNAG	3 cut(s)	201, 563, 768
Hsp92II	CATG	4 cut(s)	200, 280, 508, 997
HspAI	GCGC	1 cut(s)	21
KroI	GCCGGC	1 cut(s)	981
KroNI	GCCGGC	1 cut(s)	983
KspI	CCGCGG	1 cut(s)	265
Kzo9I	GATC	3 cut(s)	630, 771, 873
LmnI	GCTCC	2 cut(s)	337, 358
Lsp1109I	GCAGC	2 cut(s)	852, 1106
LweI	GCATC	4 cut(s)	376, 466, 514, 1028
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	3 cut(s)	632, 773, 875
MboI	GATC	3 cut(s)	630, 771, 873
MboII	GAAGA	3 cut(s)	335, 385, 533
MflI	RGATCY	1 cut(s)	873
MhlI	GDGCHC	3 cut(s)	284, 334, 355
MluCI	AATT	3 cut(s)	301, 751, 939
MroNI	GCCGGC	1 cut(s)	981
MseI	TTAA	2 cut(s)	387, 534
MspA1I	CMGCKG	2 cut(s)	264, 1097
MspR9I	CCNGG	8 cut(s)	102, 156, 249, 297, 312, 348, 447, 489
Mva1269I	GAATGC	2 cut(s)	221, 895
MvaI	CCWGG	3 cut(s)	102, 447, 489
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	6 cut(s)	27, 43, 49, 244, 564, 1103
NaeI	GCCGGC	1 cut(s)	983
NciI	CCSGG	5 cut(s)	156, 249, 297, 312, 348
NdeI	CATATG	1 cut(s)	987
NdeII	GATC	3 cut(s)	630, 771, 873
NgoMIV	GCCGGC	1 cut(s)	981
NlaIII	CATG	4 cut(s)	200, 280, 508, 997
NlaIV	GGNNCC	6 cut(s)	38, 106, 246, 282, 309, 1025
NmuCI	GTSAC	1 cut(s)	379
NspI	RCATGY	1 cut(s)	997
PaeR7I	CTCGAG	1 cut(s)	957
PctI	GAATGC	2 cut(s)	221, 895
PdiI	GCCGGC	1 cut(s)	983
PfeI	GAWTC	4 cut(s)	6, 413, 442, 740
PkrI	GCNGC	7 cut(s)	45, 237, 240, 481, 484, 867, 1096
PshAI	GACNNNNGTC	1 cut(s)	591
Psp6I	CCWGG	3 cut(s)	100, 445, 487
PspGI	CCWGG	3 cut(s)	100, 445, 487
PspN4I	GGNNCC	6 cut(s)	38, 106, 246, 282, 309, 1025
PspOMI	GGGCCC	1 cut(s)	280
PspPI	GGNCC	3 cut(s)	182, 280, 281
PstI	CTGCAG	1 cut(s)	870
PsuI	RGATCY	1 cut(s)	873
PvuII	CAGCTG	1 cut(s)	1097
RsaI	GTAC	3 cut(s)	257, 320, 812
RsaNI	GTAC	3 cut(s)	256, 319, 811
SacII	CCGCGG	1 cut(s)	265
SaqAI	TTAA	2 cut(s)	387, 534
SatI	GCNGC	7 cut(s)	44, 236, 239, 480, 483, 866, 1095
Sau3AI	GATC	3 cut(s)	630, 771, 873
Sau96I	GGNCC	3 cut(s)	182, 280, 281
ScrFI	CCNGG	8 cut(s)	102, 156, 249, 297, 312, 348, 447, 489
SduI	GDGCHC	3 cut(s)	284, 334, 355
SfaNI	GCATC	4 cut(s)	376, 466, 514, 1028
SfcI	CTRYAG	2 cut(s)	866, 1048
Sfr274I	CTCGAG	1 cut(s)	957
Sfr303I	CCGCGG	1 cut(s)	265
SgrAI	CRCCGGYG	1 cut(s)	241
SgrBI	CCGCGG	1 cut(s)	265
SinI	GGWCC	1 cut(s)	182
SlaI	CTCGAG	1 cut(s)	957
SmlI	CTYRAG	1 cut(s)	957
SmoI	CTYRAG	1 cut(s)	957
Sse9I	AATT	3 cut(s)	301, 751, 939
StyD4I	CCNGG	8 cut(s)	100, 154, 247, 295, 310, 346, 445, 487
StyI	CCWWGG	1 cut(s)	1011
TaaI	ACNGT	4 cut(s)	80, 379, 502, 970
TaqI	TCGA	3 cut(s)	426, 585, 958
TasI	AATT	3 cut(s)	301, 751, 939
TatI	WGTACW	1 cut(s)	810
TauI	GCSGC	5 cut(s)	46, 238, 241, 482, 485
TfiI	GAWTC	4 cut(s)	6, 413, 442, 740
Tru1I	TTAA	2 cut(s)	387, 534
Tru9I	TTAA	2 cut(s)	387, 534
TscAI	CASTG	2 cut(s)	789, 1006
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	2 cut(s)	865, 1094
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	4 cut(s)	265, 630, 842, 933
TspRI	CASTG	2 cut(s)	789, 1006
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	1 cut(s)	751
XceI	RCATGY	1 cut(s)	997
XhoI	CTCGAG	1 cut(s)	957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.