Prupe.6G100500_v2.0.a1

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0012841
Physical Location & Seq
Forward (+)
7000210 .. 7003389
3180 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G100500.1

Sequence Viewer

Length: 1101 bp
ATGGGTAATTTAGGCAGCACCAGCTCCGGTCGCCGGAGGCACCGGACCCAACCGCCTCAAGGGCATGGCTTTGTTGCTGCCACACCACCCTACCCATCTCAATATCCAAACGGACAAGACCCCAATCCAAGCCAACACCACCAGTACCCATCTCAGTATCCAAATGCACCAAACCCAAATCCACCCCAATTCTTCCAATACCCTGGTTTCTACCCACCACCGCCTGTCCCGGGTCCCTATCCGCAGCCTTATCACGGCGGCGGGGTCTACATGGGTCCCCCTCCCGCCAATTGGGCACCCGGGCAGTTGCCTTATGGAGCTGCCCCTCCCCCTCCGGGTGCTCCATTTGTGGAACATCAAAAGACAGTCACCATTAAGAATGACGTCAATATCAAGAAAGACTCTCTGCGGGTTGAGCCGGATGAGGAGAATCCCGGGAGGTTCCTTATTGCGTTCACTTTTGATGCTGCTGCGCCCGGACGCATTACAGTTATGTTTTTTGCTAAAGAAGATGCAGACTGTAATCTGATAGCAACAAAGGAAAGCTTGTTTAAATCTGTTACAGTGCCTTTTGAGAAAGGACTTGGCCAGAAGTTTAGACAACCTTCTGGAACTGGGATTGACTTCTCAATGTTTGAGGAGATAGGGTTAACGAAAGAGGGTGACATAGAAGTTTATCCTCTTGTGGTGAAGGCTGAAGCATTCCCTTTAAATGCTGGTGAACGGGAATCAGATGGAAATTCAGCTGGGAACTCTCAGATCACCCAGGCAGTGTTTGAAAAGAAGGAGAATGGGGAGTACAAAGTGCGGGTGATGAAGCAGATACTATGGGTGAATGGGATGAGGTACGAGCTCCAGGAGATCTATGGTATTGGGAATGCAGTTGAAGGTGATCAAAATGGAAATGATTCTGGGAAAGAATGTATAATATGCTTGTCAGAGCCTCGAGACACAACCGTTCTCCCATGCCGGCACATGTGCATGTGCAGTGGTTGTGCTAAGGTTCTGAGGTTCCAGACAAATAGGTGCCCCGTCTGTAGGCAACCAGTTGAACGACTCTTGGAAATCAAGGTGAACAATGAAGCCAATAGCTCAGAGTAA

Protein Analysis

367

Amino Acids

40.31

Weight (kDa)

6.04

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012841)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53410
fragaria_vesca FvH4_3g32531 FvH4_3g32531
malus_domestica MD03G1116400.v1.1 MD11G1134600.v1.1
prunus_persica Prupe.6G100500_v2.0.a1
pyrus_communis pycom11g11170
rosa_chinensis RchiOBHm_Chr5g0059601
rosa_laevigata RLG00000035307 RLG00000035309
rosa_multiflora Rmu_ssc0000488.1_g000001
rosa_roxburghii Rroxscaffold_1G00021010
rosa_rugosa Rorug05G0323600
rosa_samantha Rh5AG388600 Rh5BG400200 Rh5CG424500 Rh5DG416500
rosa_wichuraiana Rw5G036590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 387
AccB1I GGYRCC 3 cut(s) 39, 295, 1026
AccI GTMKAC 1 cut(s) 267
AciI CCGC 8 cut(s) 53, 221, 242, 258, 261, 285, 409, 808
AcoI YGGCCR 1 cut(s) 586
AcsI RAATTY 1 cut(s) 739
AcuI CTGAAG 1 cut(s) 717
AcyI GRCGYC 1 cut(s) 384
AfaI GTAC 3 cut(s) 146, 800, 848
AfiI CCNNNNNNNGG 7 cut(s) 33, 59, 230, 254, 291, 335, 1038
AflIII ACRYGT 1 cut(s) 975
AgsI TTSAA 3 cut(s) 779, 887, 1052
AjnI CCWGG 3 cut(s) 202, 765, 855
AluBI AGCT 6 cut(s) 24, 320, 546, 746, 853, 1092
AluI AGCT 6 cut(s) 24, 320, 546, 746, 853, 1092
Alw21I GWGCWC 2 cut(s) 343, 855
Alw26I GTCTC 1 cut(s) 942
Ama87I CYCGRG 4 cut(s) 229, 299, 434, 945
AoxI GGCC 1 cut(s) 586
ApeKI GCWGC 6 cut(s) 15, 77, 244, 320, 467, 470
ApoI RAATTY 1 cut(s) 739
Asp700I GAANNNNTTC 1 cut(s) 907
AspLEI GCGC 1 cut(s) 475
AspS9I GGNCC 3 cut(s) 45, 233, 275
AsuC2I CCSGG 8 cut(s) 230, 231, 300, 301, 336, 435, 436, 477
AsuHPI GGTGA 9 cut(s) 361, 674, 700, 731, 754, 823, 844, 902, 1084
AvaI CYCGRG 4 cut(s) 229, 299, 434, 945
AvaII GGWCC 3 cut(s) 45, 233, 275
BaeGI GKGCMC 2 cut(s) 298, 1031
BalI TGGCCA 1 cut(s) 588
BanI GGYRCC 3 cut(s) 39, 295, 1026
BanII GRGCYC 1 cut(s) 855
Bbv12I GWGCWC 2 cut(s) 343, 855
BbvI GCAGC 6 cut(s) 27, 64, 256, 307, 454, 457
BccI CCATC 3 cut(s) 103, 157, 728
BceAI ACGGC 1 cut(s) 271
BciT130I CCWGG 3 cut(s) 204, 767, 857
BciVI GTATCC 1 cut(s) 168
BclI TGATCA 1 cut(s) 892
BcnI CCSGG 8 cut(s) 230, 231, 300, 301, 336, 435, 436, 477
BcoDI GTCTC 1 cut(s) 942
BfmI CTRYAG 1 cut(s) 1036
BfuI GTATCC 1 cut(s) 168
BglI GCCNNNNNGGC 2 cut(s) 61, 293
BglII AGATCT 1 cut(s) 861
BisI GCNGC 7 cut(s) 16, 78, 245, 259, 321, 468, 471
BlsI GCNGC 7 cut(s) 17, 79, 246, 260, 322, 469, 472
Bme18I GGWCC 3 cut(s) 45, 233, 275
BmeT110I CYCGRG 4 cut(s) 229, 299, 434, 945
BmgT120I GGNCC 3 cut(s) 45, 233, 275
BmrI ACTGGG 1 cut(s) 624
BmsI GCATC 2 cut(s) 454, 502
BmuI ACTGGG 1 cut(s) 624
BpmI CTGGAG 1 cut(s) 839
Bpu10I CCTNAGC 1 cut(s) 999
BpuEI CTTGAG 1 cut(s) 42
BpuMI CCSGG 8 cut(s) 230, 231, 300, 301, 336, 435, 436, 477
BsaHI GRCGYC 1 cut(s) 384
BsaJI CCNNGG 5 cut(s) 202, 229, 299, 434, 765
BsaWI WCCGGW 2 cut(s) 26, 42
BsaXI ACNNNNNCTCC 2 cut(s) 632, 662
Bsc4I CCNNNNNNNGG 7 cut(s) 33, 59, 230, 254, 291, 335, 1038
Bse118I RCCGGY 1 cut(s) 969
Bse1I ACTGG 3 cut(s) 142, 619, 1046
BseBI CCWGG 3 cut(s) 204, 767, 857
BseDI CCNNGG 5 cut(s) 202, 229, 299, 434, 765
BseGI GGATG 2 cut(s) 427, 846
BseLI CCNNNNNNNGG 7 cut(s) 33, 59, 230, 254, 291, 335, 1038
BseMII CTCAG 3 cut(s) 167, 770, 998
BseNI ACTGG 3 cut(s) 142, 619, 1046
BseRI GAGGAG 2 cut(s) 440, 653
BseSI GKGCMC 2 cut(s) 298, 1031
BseXI GCAGC 6 cut(s) 27, 64, 256, 307, 454, 457
BseYI CCCAGC 1 cut(s) 746
BsgI GTGCAG 1 cut(s) 1006
Bsh1285I CGRYCG 1 cut(s) 31
BshFI GGCC 1 cut(s) 588
BshNI GGYRCC 3 cut(s) 39, 295, 1026
BsiEI CGRYCG 1 cut(s) 31
BsiHKAI GWGCWC 2 cut(s) 343, 855
BsiHKCI CYCGRG 4 cut(s) 229, 299, 434, 945
BslFI GGGAC 3 cut(s) 212, 219, 261
BslI CCNNNNNNNGG 7 cut(s) 33, 59, 230, 254, 291, 335, 1038
BsmAI GTCTC 1 cut(s) 942
BsmFI GGGAC 3 cut(s) 212, 219, 261
BsmI GAATGC 2 cut(s) 701, 883
BsnI GGCC 1 cut(s) 588
BsoBI CYCGRG 4 cut(s) 229, 299, 434, 945
Bsp1286I GDGCHC 4 cut(s) 298, 343, 855, 1031
Bsp143I GATC 3 cut(s) 759, 861, 892
BspACI CCGC 8 cut(s) 53, 221, 242, 258, 261, 285, 409, 808
BspANI GGCC 1 cut(s) 588
BspCNI CTCAG 3 cut(s) 166, 769, 999
BspT107I GGYRCC 3 cut(s) 39, 295, 1026
BsrFI RCCGGY 1 cut(s) 969
BsrI ACTGG 3 cut(s) 142, 619, 1046
BssAI RCCGGY 1 cut(s) 969
BssECI CCNNGG 5 cut(s) 202, 229, 299, 434, 765
BssMI GATC 3 cut(s) 759, 861, 892
BssNI GRCGYC 1 cut(s) 384
Bst2UI CCWGG 3 cut(s) 204, 767, 857
Bst4CI ACNGT 5 cut(s) 367, 490, 521, 565, 958
BstACI GRCGYC 1 cut(s) 384
BstC8I GCNNGC 1 cut(s) 971
BstDEI CTNAG 5 cut(s) 153, 756, 999, 1007, 1093
BstF5I GGATG 2 cut(s) 427, 846
BstHHI GCGC 1 cut(s) 475
BstKTI GATC 3 cut(s) 762, 864, 895
BstMAI GTCTC 1 cut(s) 942
BstMBI GATC 3 cut(s) 759, 861, 892
BstMCI CGRYCG 1 cut(s) 31
BstMWI GCNNNNNNNGC 5 cut(s) 21, 30, 61, 293, 415
BstNI CCWGG 3 cut(s) 204, 767, 857
BstNSI RCATGY 2 cut(s) 979, 985
BstSFI CTRYAG 1 cut(s) 1036
BstSLI GKGCMC 2 cut(s) 298, 1031
BstV1I GCAGC 6 cut(s) 27, 64, 256, 307, 454, 457
BstX2I RGATCY 1 cut(s) 861
BstXI CCANNNNNNTGG 1 cut(s) 203
BstYI RGATCY 1 cut(s) 861
BsuI GTATCC 1 cut(s) 168
BsuRI GGCC 1 cut(s) 588
BtsCI GGATG 2 cut(s) 427, 846
BtsI GCAGTG 2 cut(s) 777, 994
BtsIMutI CAGTG 3 cut(s) 570, 777, 994
Cac8I GCNNGC 1 cut(s) 971
CfoI GCGC 1 cut(s) 475
Cfr10I RCCGGY 1 cut(s) 969
Cfr13I GGNCC 3 cut(s) 45, 233, 275
Cfr9I CCCGGG 3 cut(s) 229, 299, 434
CseI GACGC 1 cut(s) 489
Csp6I GTAC 3 cut(s) 145, 799, 847
CviAII CATG 5 cut(s) 65, 271, 966, 976, 982
CviQI GTAC 3 cut(s) 145, 799, 847
DdeI CTNAG 5 cut(s) 153, 756, 999, 1007, 1093
DpnI GATC 3 cut(s) 761, 863, 894
DpnII GATC 3 cut(s) 759, 861, 892
DraI TTTAAA 2 cut(s) 553, 711
EaeI YGGCCR 1 cut(s) 586
Ecl136II GAGCTC 1 cut(s) 853
Eco24I GRGCYC 1 cut(s) 855
Eco47I GGWCC 3 cut(s) 45, 233, 275
Eco53kI GAGCTC 1 cut(s) 853
Eco57I CTGAAG 1 cut(s) 717
Eco88I CYCGRG 4 cut(s) 229, 299, 434, 945
EcoICRI GAGCTC 1 cut(s) 853
EcoO109I RGGNCCY 2 cut(s) 233, 275
EcoRII CCWGG 3 cut(s) 202, 765, 855
EcoT38I GRGCYC 1 cut(s) 855
FaeI CATG 5 cut(s) 68, 274, 969, 979, 985
FalI AAGNNNNNCTT 2 cut(s) 530, 562
FaqI GGGAC 3 cut(s) 212, 219, 261
FatI CATG 5 cut(s) 64, 270, 965, 975, 981
FauI CCCGC 4 cut(s) 254, 292, 402, 801
FbaI TGATCA 1 cut(s) 892
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 7 cut(s) 16, 78, 245, 259, 321, 468, 471
FokI GGATG 2 cut(s) 434, 853
FriOI GRGCYC 1 cut(s) 855
Fsp4HI GCNGC 7 cut(s) 16, 78, 245, 259, 321, 468, 471
GlaI GCGC 1 cut(s) 474
GluI GCNGC 7 cut(s) 16, 78, 245, 259, 321, 468, 471
GsaI CCCAGC 1 cut(s) 750
GsuI CTGGAG 1 cut(s) 839
HaeIII GGCC 1 cut(s) 588
HgaI GACGC 1 cut(s) 489
HhaI GCGC 1 cut(s) 475
Hin1I GRCGYC 1 cut(s) 384
Hin1II CATG 5 cut(s) 68, 274, 969, 979, 985
Hin6I GCGC 1 cut(s) 473
HinP1I GCGC 1 cut(s) 473
HincII GTYRAC 1 cut(s) 651
HindII GTYRAC 1 cut(s) 651
HindIII AAGCTT 1 cut(s) 544
HinfI GANTC 5 cut(s) 401, 430, 728, 908, 1056
HpaI GTTAAC 1 cut(s) 651
HphI GGTGA 9 cut(s) 361, 674, 700, 731, 754, 823, 844, 902, 1084
Hpy166II GTNNAC 5 cut(s) 268, 456, 651, 722, 1075
Hpy188I TCNGA 6 cut(s) 528, 733, 759, 940, 1008, 1096
Hpy188III TCNNGA 4 cut(s) 394, 609, 947, 1015
Hpy8I GTNNAC 5 cut(s) 268, 456, 651, 722, 1075
HpyAV CCTTC 4 cut(s) 615, 685, 778, 881
HpyCH4III ACNGT 5 cut(s) 367, 490, 521, 565, 958
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 5 cut(s) 167, 515, 881, 981, 987
HpyF10VI GCNNNNNNNGC 5 cut(s) 21, 30, 61, 293, 415
HpyF3I CTNAG 5 cut(s) 153, 756, 999, 1007, 1093
HpySE526I ACGT 1 cut(s) 384
Hsp92I GRCGYC 1 cut(s) 384
Hsp92II CATG 5 cut(s) 68, 274, 969, 979, 985
HspAI GCGC 1 cut(s) 473
KflI GGGWCCC 2 cut(s) 233, 275
KroI GCCGGC 1 cut(s) 969
KroNI GCCGGC 1 cut(s) 971
Ksp22I TGATCA 1 cut(s) 892
KspAI GTTAAC 1 cut(s) 651
Kzo9I GATC 3 cut(s) 759, 861, 892
LmnI GCTCC 4 cut(s) 29, 317, 346, 858
Lsp1109I GCAGC 6 cut(s) 27, 64, 256, 307, 454, 457
LweI GCATC 2 cut(s) 454, 502
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 3 cut(s) 367, 559, 662
MalI GATC 3 cut(s) 761, 863, 894
MboI GATC 3 cut(s) 759, 861, 892
MboII GAAGA 2 cut(s) 184, 521
MfeI CAATTG 1 cut(s) 289
MflI RGATCY 1 cut(s) 861
MhlI GDGCHC 4 cut(s) 298, 343, 855, 1031
MlsI TGGCCA 1 cut(s) 588
MluCI AATT 4 cut(s) 7, 188, 289, 739
MluNI TGGCCA 1 cut(s) 588
MlyI GAGTC 2 cut(s) 395, 1050
Mox20I TGGCCA 1 cut(s) 588
MroNI GCCGGC 1 cut(s) 969
MroXI GAANNNNTTC 1 cut(s) 907
MscI TGGCCA 1 cut(s) 588
MseI TTAA 4 cut(s) 375, 552, 650, 710
MslI CAYNNNNRTG 1 cut(s) 980
Msp20I TGGCCA 1 cut(s) 588
MspA1I CMGCKG 1 cut(s) 746
MunI CAATTG 1 cut(s) 289
Mva1269I GAATGC 2 cut(s) 701, 883
MvaI CCWGG 3 cut(s) 204, 767, 857
MwoI GCNNNNNNNGC 5 cut(s) 21, 30, 61, 293, 415
NaeI GCCGGC 1 cut(s) 971
NciI CCSGG 8 cut(s) 230, 231, 300, 301, 336, 435, 436, 477
NdeII GATC 3 cut(s) 759, 861, 892
NgoMIV GCCGGC 1 cut(s) 969
NlaIII CATG 5 cut(s) 68, 274, 969, 979, 985
NmuCI GTSAC 2 cut(s) 367, 662
NspI RCATGY 2 cut(s) 979, 985
PaeR7I CTCGAG 1 cut(s) 945
PciI ACATGT 1 cut(s) 975
PctI GAATGC 2 cut(s) 701, 883
PdiI GCCGGC 1 cut(s) 971
PdmI GAANNNNTTC 1 cut(s) 907
PfeI GAWTC 3 cut(s) 430, 728, 908
PfoI TCCNGGA 1 cut(s) 855
PkrI GCNGC 7 cut(s) 17, 79, 246, 260, 322, 469, 472
PleI GAGTC 2 cut(s) 395, 1050
PpsI GAGTC 2 cut(s) 395, 1050
PpuMI RGGWCCY 2 cut(s) 233, 275
PscI ACATGT 1 cut(s) 975
Psp124BI GAGCTC 1 cut(s) 855
Psp5II RGGWCCY 2 cut(s) 233, 275
Psp6I CCWGG 3 cut(s) 202, 765, 855
PspFI CCCAGC 1 cut(s) 746
PspGI CCWGG 3 cut(s) 202, 765, 855
PspPI GGNCC 3 cut(s) 45, 233, 275
PspPPI RGGWCCY 2 cut(s) 233, 275
PsuI RGATCY 1 cut(s) 861
PvuII CAGCTG 1 cut(s) 746
RsaI GTAC 3 cut(s) 146, 800, 848
RsaNI GTAC 3 cut(s) 145, 799, 847
RseI CAYNNNNRTG 1 cut(s) 980
SacI GAGCTC 1 cut(s) 855
SaqAI TTAA 4 cut(s) 375, 552, 650, 710
SatI GCNGC 7 cut(s) 16, 78, 245, 259, 321, 468, 471
Sau3AI GATC 3 cut(s) 759, 861, 892
Sau96I GGNCC 3 cut(s) 45, 233, 275
SchI GAGTC 2 cut(s) 395, 1050
SduI GDGCHC 4 cut(s) 298, 343, 855, 1031
SfaNI GCATC 2 cut(s) 454, 502
SfcI CTRYAG 1 cut(s) 1036
Sfr274I CTCGAG 1 cut(s) 945
SinI GGWCC 3 cut(s) 45, 233, 275
SlaI CTCGAG 1 cut(s) 945
SmaI CCCGGG 3 cut(s) 231, 301, 436
SmiMI CAYNNNNRTG 1 cut(s) 980
SmlI CTYRAG 2 cut(s) 57, 945
SmoI CTYRAG 2 cut(s) 57, 945
Sse9I AATT 4 cut(s) 7, 188, 289, 739
SsiI CCGC 8 cut(s) 53, 221, 242, 258, 261, 285, 409, 808
SstI GAGCTC 1 cut(s) 855
TaaI ACNGT 5 cut(s) 367, 490, 521, 565, 958
TaiI ACGT 1 cut(s) 387
TaqI TCGA 1 cut(s) 946
TasI AATT 4 cut(s) 7, 188, 289, 739
TatI WGTACW 1 cut(s) 798
TauI GCSGC 1 cut(s) 261
TfiI GAWTC 3 cut(s) 430, 728, 908
Tru1I TTAA 4 cut(s) 375, 552, 650, 710
Tru9I TTAA 4 cut(s) 375, 552, 650, 710
TscAI CASTG 3 cut(s) 570, 777, 994
TseFI GTSAC 2 cut(s) 367, 662
TseI GCWGC 6 cut(s) 15, 77, 244, 320, 467, 470
Tsp45I GTSAC 2 cut(s) 367, 662
TspDTI ATGAA 2 cut(s) 830, 1095
TspGWI ACGGA 1 cut(s) 126
TspMI CCCGGG 3 cut(s) 229, 299, 434
TspRI CASTG 3 cut(s) 570, 777, 994
VpaK11BI GGWCC 3 cut(s) 45, 233, 275
XapI RAATTY 1 cut(s) 739
XceI RCATGY 2 cut(s) 979, 985
XcmI CCANNNNNNNNNTGG 1 cut(s) 863
XhoI CTCGAG 1 cut(s) 945
XmaI CCCGGG 3 cut(s) 229, 299, 434
XmiI GTMKAC 1 cut(s) 267
XmnI GAANNNNTTC 1 cut(s) 907
ZraI GACGTC 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.