Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000488.1

Orthogroup ID

OG0012841

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 902

Gene Structure 902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000488.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 622 bp

cattaccgtcatgttttttacgaaagaagatgccgactttaacttgatagcaacaaaggaaagcttgcttaaacctgttaaagtgccgtttgacaaaggtcttggtcaaaagtttagacaaccttctggaactgggatcgacttttcaatgtttgaggagatagggttgacaaaagagggtgacatagaagtttatcctcttgtggtgaaagctgaagcacatctcgtgaatgaaggtgaacgtgaatcagagggaaattccaccgggaactctcagatcacacaggcagtgtttgaaaagaaggagaatggtgagtacaaggtgcgggtagtgaaacagatactatgggtggataatatgaggtatgagctgcaggagatctatggtattgggaatgcagttgaaggtgatcaaaatgataatgaagctggaaaagactgtataatttgcttgtcagaacctcgagatacaactgtgctcccttgccggcacatgtgcatgtgcagtggttgtgccaaggttctgcggttccagacaaatagatgccccgtctgtaggcaaccagttgaacggctcttggaaatcaaggtgaccaatggagctgatggtgctttaggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008277 GO:0008589 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0023057 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043949 GO:0043951 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045744 GO:0045879 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

206

Amino Acids

22.97

Weight (kDa)

5.05

Isoelectric Point (pI)

26.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53410
fragaria_vesca	FvH4_3g32531 FvH4_3g32531
malus_domestica	MD03G1116400.v1.1 MD11G1134600.v1.1
prunus_persica	Prupe.6G100500_v2.0.a1
pyrus_communis	pycom11g11170
rosa_chinensis	RchiOBHm_Chr5g0059601
rosa_laevigata	RLG00000035307 RLG00000035309
rosa_multiflora	Rmu_ssc0000488.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021010
rosa_rugosa	Rorug05G0323600
rosa_samantha	Rh5AG388600 Rh5BG400200 Rh5CG424500 Rh5DG416500
rosa_wichuraiana	Rw5G036590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	326, 527
AclWI	GGATC	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	235
AfaI	GTAC	1 cut(s)	318
AfiI	CCNNNNNNNGG	1 cut(s)	556
AflIII	ACRYGT	1 cut(s)	493
AgsI	TTSAA	4 cut(s)	148, 297, 405, 570
AluBI	AGCT	5 cut(s)	64, 213, 371, 429, 603
AluI	AGCT	5 cut(s)	64, 213, 371, 429, 603
Alw21I	GWGCWC	1 cut(s)	481
AlwI	GGATC	1 cut(s)	144
Ama87I	CYCGRG	1 cut(s)	463
ApeKI	GCWGC	1 cut(s)	371
ApoI	RAATTY	1 cut(s)	257
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	6 cut(s)	192, 218, 249, 324, 420, 602
AvaI	CYCGRG	1 cut(s)	463
BaeI	ACNNNNGTAYC	2 cut(s)	460, 493
BauI	CACGAG	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	481
BbvI	GCAGC	1 cut(s)	358
BccI	CCATC	1 cut(s)	600
BceAI	ACGGC	2 cut(s)	71, 588
BclI	TGATCA	1 cut(s)	410
BcnI	CCSGG	1 cut(s)	266
BfmI	CTRYAG	2 cut(s)	372, 554
BglII	AGATCT	1 cut(s)	379
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
Bme1390I	CCNGG	1 cut(s)	266
BmeT110I	CYCGRG	1 cut(s)	463
BmiI	GGNNCC	1 cut(s)	531
BmrFI	CCNGG	1 cut(s)	266
BmrI	ACTGGG	1 cut(s)	142
BmsI	GCATC	2 cut(s)	20, 534
BmuI	ACTGGG	1 cut(s)	142
BoxI	GACNNNNGTC	1 cut(s)	97
BpuMI	CCSGG	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	517
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	1 cut(s)	556
Bse118I	RCCGGY	1 cut(s)	487
Bse1I	ACTGG	2 cut(s)	137, 564
BseDI	CCNNGG	1 cut(s)	517
BseLI	CCNNNNNNNGG	1 cut(s)	556
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	2 cut(s)	137, 564
BseRI	GAGGAG	1 cut(s)	171
BseXI	GCAGC	1 cut(s)	358
BsgI	GTGCAG	1 cut(s)	524
BsiHKAI	GWGCWC	1 cut(s)	481
BsiHKCI	CYCGRG	1 cut(s)	463
BsiSI	CCGG	2 cut(s)	265, 488
BslI	CCNNNNNNNGG	1 cut(s)	556
BsmI	GAATGC	1 cut(s)	401
BsoBI	CYCGRG	1 cut(s)	463
Bsp1286I	GDGCHC	1 cut(s)	481
Bsp143I	GATC	4 cut(s)	136, 277, 379, 410
BspACI	CCGC	2 cut(s)	326, 527
BspCNI	CTCAG	1 cut(s)	287
BspLI	GGNNCC	1 cut(s)	531
BspMAI	CTGCAG	1 cut(s)	376
BspPI	GGATC	1 cut(s)	144
BsrFI	RCCGGY	1 cut(s)	487
BsrI	ACTGG	2 cut(s)	137, 564
BssAI	RCCGGY	1 cut(s)	487
BssECI	CCNNGG	1 cut(s)	517
BssMI	GATC	4 cut(s)	136, 277, 379, 410
BssSI	CACGAG	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	517
Bst2BI	CACGAG	1 cut(s)	225
Bst4CI	ACNGT	3 cut(s)	8, 441, 476
BstC8I	GCNNGC	2 cut(s)	66, 489
BstDEI	CTNAG	1 cut(s)	274
BstEII	GGTNACC	1 cut(s)	590
BstKTI	GATC	4 cut(s)	139, 280, 382, 413
BstMBI	GATC	4 cut(s)	136, 277, 379, 410
BstMWI	GCNNNNNNNGC	1 cut(s)	609
BstNSI	RCATGY	2 cut(s)	497, 503
BstPAI	GACNNNNGTC	1 cut(s)	97
BstPI	GGTNACC	1 cut(s)	590
BstSCI	CCNGG	1 cut(s)	264
BstSFI	CTRYAG	2 cut(s)	372, 554
BstV1I	GCAGC	1 cut(s)	358
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BtsI	GCAGTG	2 cut(s)	295, 512
BtsIMutI	CAGTG	2 cut(s)	295, 512
Cac8I	GCNNGC	2 cut(s)	66, 489
Cfr10I	RCCGGY	1 cut(s)	487
Csp6I	GTAC	1 cut(s)	317
CviAII	CATG	3 cut(s)	11, 494, 500
CviJI	RGCY	6 cut(s)	64, 213, 371, 429, 575, 603
CviKI_1	RGCY	6 cut(s)	64, 213, 371, 429, 575, 603
CviQI	GTAC	1 cut(s)	317
DdeI	CTNAG	1 cut(s)	274
DpnI	GATC	4 cut(s)	138, 279, 381, 412
DpnII	GATC	4 cut(s)	136, 277, 379, 410
Eco130I	CCWWGG	1 cut(s)	517
Eco57I	CTGAAG	1 cut(s)	235
Eco88I	CYCGRG	1 cut(s)	463
Eco91I	GGTNACC	1 cut(s)	590
EcoO65I	GGTNACC	1 cut(s)	590
EcoT14I	CCWWGG	1 cut(s)	517
ErhI	CCWWGG	1 cut(s)	517
FaeI	CATG	3 cut(s)	14, 497, 503
FaiI	YATR	9 cut(s)	12, 186, 347, 360, 367, 385, 444, 495, 501
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FatI	CATG	3 cut(s)	10, 493, 499
FauI	CCCGC	1 cut(s)	319
FbaI	TGATCA	1 cut(s)	410
Fnu4HI	GCNGC	1 cut(s)	372
Fsp4HI	GCNGC	1 cut(s)	372
GluI	GCNGC	1 cut(s)	372
HapII	CCGG	2 cut(s)	265, 488
Hin1II	CATG	3 cut(s)	14, 497, 503
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	1 cut(s)	246
HpaII	CCGG	2 cut(s)	265, 488
HphI	GGTGA	6 cut(s)	192, 218, 249, 324, 420, 602
Hpy166II	GTNNAC	2 cut(s)	169, 240
Hpy188I	TCNGA	3 cut(s)	251, 277, 458
Hpy188III	TCNNGA	4 cut(s)	127, 227, 465, 533
Hpy8I	GTNNAC	2 cut(s)	169, 240
HpyAV	CCTTC	4 cut(s)	133, 228, 296, 399
HpyCH4III	ACNGT	3 cut(s)	8, 441, 476
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	4 cut(s)	374, 399, 499, 505
HpyF10VI	GCNNNNNNNGC	1 cut(s)	609
HpyF3I	CTNAG	1 cut(s)	274
HpySE526I	ACGT	1 cut(s)	242
Hsp92II	CATG	3 cut(s)	14, 497, 503
KroI	GCCGGC	1 cut(s)	487
KroNI	GCCGGC	1 cut(s)	489
Ksp22I	TGATCA	1 cut(s)	410
Kzo9I	GATC	4 cut(s)	136, 277, 379, 410
LmnI	GCTCC	2 cut(s)	484, 600
Lsp1109I	GCAGC	1 cut(s)	358
LweI	GCATC	2 cut(s)	20, 534
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	2 cut(s)	180, 590
MalI	GATC	4 cut(s)	138, 279, 381, 412
MboI	GATC	4 cut(s)	136, 277, 379, 410
MboII	GAAGA	1 cut(s)	39
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	481
MluCI	AATT	2 cut(s)	257, 445
MnlI	CCTC	6 cut(s)	149, 170, 208, 245, 355, 472
MroNI	GCCGGC	1 cut(s)	487
MseI	TTAA	3 cut(s)	40, 70, 79
MslI	CAYNNNNRTG	1 cut(s)	498
MspI	CCGG	2 cut(s)	265, 488
MspR9I	CCNGG	1 cut(s)	266
Mva1269I	GAATGC	1 cut(s)	401
MwoI	GCNNNNNNNGC	1 cut(s)	609
NaeI	GCCGGC	1 cut(s)	489
NciI	CCSGG	1 cut(s)	266
NdeII	GATC	4 cut(s)	136, 277, 379, 410
NgoMIV	GCCGGC	1 cut(s)	487
NlaIII	CATG	3 cut(s)	14, 497, 503
NlaIV	GGNNCC	1 cut(s)	531
NmuCI	GTSAC	2 cut(s)	180, 590
NspI	RCATGY	2 cut(s)	497, 503
PaeR7I	CTCGAG	1 cut(s)	463
PciI	ACATGT	1 cut(s)	493
PctI	GAATGC	1 cut(s)	401
PdiI	GCCGGC	1 cut(s)	489
PfeI	GAWTC	1 cut(s)	246
PkrI	GCNGC	1 cut(s)	373
PscI	ACATGT	1 cut(s)	493
PshAI	GACNNNNGTC	1 cut(s)	97
PspEI	GGTNACC	1 cut(s)	590
PspN4I	GGNNCC	1 cut(s)	531
PstI	CTGCAG	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	379
RsaI	GTAC	1 cut(s)	318
RsaNI	GTAC	1 cut(s)	317
RseI	CAYNNNNRTG	1 cut(s)	498
SaqAI	TTAA	3 cut(s)	40, 70, 79
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	4 cut(s)	136, 277, 379, 410
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	481
SfaNI	GCATC	2 cut(s)	20, 534
SfcI	CTRYAG	2 cut(s)	372, 554
Sfr274I	CTCGAG	1 cut(s)	463
SlaI	CTCGAG	1 cut(s)	463
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	1 cut(s)	463
SmoI	CTYRAG	1 cut(s)	463
Sse9I	AATT	2 cut(s)	257, 445
SsiI	CCGC	2 cut(s)	326, 527
StyD4I	CCNGG	1 cut(s)	264
StyI	CCWWGG	1 cut(s)	517
TaaI	ACNGT	3 cut(s)	8, 441, 476
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	2 cut(s)	139, 464
TasI	AATT	2 cut(s)	257, 445
TatI	WGTACW	1 cut(s)	316
TfiI	GAWTC	1 cut(s)	246
Tru1I	TTAA	3 cut(s)	40, 70, 79
Tru9I	TTAA	3 cut(s)	40, 70, 79
TscAI	CASTG	2 cut(s)	295, 512
TseFI	GTSAC	2 cut(s)	180, 590
TseI	GCWGC	1 cut(s)	371
Tsp45I	GTSAC	2 cut(s)	180, 590
TspDTI	ATGAA	2 cut(s)	247, 439
TspRI	CASTG	2 cut(s)	295, 512
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	2 cut(s)	497, 503
XhoI	CTCGAG	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.