E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G53410 |
| fragaria_vesca | FvH4_3g32531 FvH4_3g32531 |
| malus_domestica | MD03G1116400.v1.1 MD11G1134600.v1.1 |
| prunus_persica | Prupe.6G100500_v2.0.a1 |
| pyrus_communis | pycom11g11170 |
| rosa_chinensis | RchiOBHm_Chr5g0059601 |
| rosa_laevigata | RLG00000035307 RLG00000035309 |
| rosa_multiflora | Rmu_ssc0000488.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00021010 |
| rosa_rugosa | Rorug05G0323600 |
| rosa_samantha | Rh5AG388600 Rh5BG400200 Rh5CG424500 Rh5DG416500 |
| rosa_wichuraiana | Rw5G036590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 261 |
| AccB1I | GGYRCC | 3 cut(s) | 36, 101, 261 |
| AccII | CGCG | 1 cut(s) | 270 |
| AclWI | GGATC | 1 cut(s) | 641 |
| AcoI | YGGCCR | 2 cut(s) | 41, 255 |
| AcsI | RAATTY | 1 cut(s) | 754 |
| AcuI | CTGAAG | 1 cut(s) | 732 |
| AfaI | GTAC | 5 cut(s) | 161, 224, 263, 323, 815 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 30, 77, 152, 274, 299, 350, 1053 |
| AflIII | ACRYGT | 1 cut(s) | 990 |
| AgsI | TTSAA | 4 cut(s) | 645, 794, 902, 1067 |
| AjnI | CCWGG | 1 cut(s) | 151 |
| AluBI | AGCT | 4 cut(s) | 561, 868, 926, 1100 |
| AluI | AGCT | 4 cut(s) | 561, 868, 926, 1100 |
| Alw21I | GWGCWC | 3 cut(s) | 337, 358, 978 |
| AlwI | GGATC | 1 cut(s) | 641 |
| Ama87I | CYCGRG | 1 cut(s) | 960 |
| AoxI | GGCC | 5 cut(s) | 41, 57, 154, 255, 286 |
| ApaI | GGGCCC | 1 cut(s) | 290 |
| ApeKI | GCWGC | 2 cut(s) | 482, 868 |
| ApoI | RAATTY | 1 cut(s) | 754 |
| Asp718I | GGTACC | 1 cut(s) | 261 |
| AspLEI | GCGC | 1 cut(s) | 23 |
| AspS9I | GGNCC | 4 cut(s) | 58, 191, 286, 287 |
| AsuC2I | CCSGG | 7 cut(s) | 259, 300, 315, 351, 450, 492, 763 |
| AsuHPI | GGTGA | 7 cut(s) | 99, 689, 715, 746, 821, 917, 1099 |
| AvaI | CYCGRG | 1 cut(s) | 960 |
| AvaII | GGWCC | 1 cut(s) | 191 |
| BaeGI | GKGCMC | 1 cut(s) | 290 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 957, 990 |
| BanI | GGYRCC | 3 cut(s) | 36, 101, 261 |
| BanII | GRGCYC | 1 cut(s) | 290 |
| BauI | CACGAG | 1 cut(s) | 722 |
| BbsI | GAAGAC | 1 cut(s) | 383 |
| Bbv12I | GWGCWC | 3 cut(s) | 337, 358, 978 |
| BbvI | GCAGC | 2 cut(s) | 469, 855 |
| BccI | CCATC | 2 cut(s) | 69, 1097 |
| BceAI | ACGGC | 2 cut(s) | 568, 1085 |
| BciT130I | CCWGG | 1 cut(s) | 153 |
| BclI | TGATCA | 1 cut(s) | 907 |
| BcnI | CCSGG | 7 cut(s) | 259, 300, 315, 351, 450, 492, 763 |
| BfmI | CTRYAG | 2 cut(s) | 869, 1051 |
| BfoI | RGCGCY | 1 cut(s) | 24 |
| BglII | AGATCT | 1 cut(s) | 876 |
| BisI | GCNGC | 6 cut(s) | 44, 245, 271, 483, 486, 869 |
| BlsI | GCNGC | 6 cut(s) | 45, 246, 272, 484, 487, 870 |
| BmcAI | AGTACT | 1 cut(s) | 224 |
| Bme1390I | CCNGG | 8 cut(s) | 153, 259, 300, 315, 351, 450, 492, 763 |
| Bme18I | GGWCC | 1 cut(s) | 191 |
| BmeT110I | CYCGRG | 1 cut(s) | 960 |
| BmgT120I | GGNCC | 4 cut(s) | 58, 191, 286, 287 |
| BmiI | GGNNCC | 6 cut(s) | 38, 103, 263, 288, 312, 1028 |
| BmrFI | CCNGG | 8 cut(s) | 153, 259, 300, 315, 351, 450, 492, 763 |
| BmrI | ACTGGG | 1 cut(s) | 639 |
| BmsI | GCATC | 4 cut(s) | 379, 469, 517, 1031 |
| BmuI | ACTGGG | 1 cut(s) | 639 |
| BoxI | GACNNNNGTC | 1 cut(s) | 594 |
| BpiI | GAAGAC | 1 cut(s) | 383 |
| BpuMI | CCSGG | 7 cut(s) | 259, 300, 315, 351, 450, 492, 763 |
| BsaJI | CCNNGG | 3 cut(s) | 268, 314, 1014 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 647, 677 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 30, 77, 152, 274, 299, 350, 1053 |
| Bse118I | RCCGGY | 4 cut(s) | 23, 39, 253, 984 |
| Bse1I | ACTGG | 4 cut(s) | 157, 220, 634, 1061 |
| BseBI | CCWGG | 1 cut(s) | 153 |
| BseDI | CCNNGG | 3 cut(s) | 268, 314, 1014 |
| BseGI | GGATG | 2 cut(s) | 61, 442 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 30, 77, 152, 274, 299, 350, 1053 |
| BseMII | CTCAG | 2 cut(s) | 785, 1013 |
| BseNI | ACTGG | 4 cut(s) | 157, 220, 634, 1061 |
| BseRI | GAGGAG | 4 cut(s) | 282, 327, 455, 668 |
| BseSI | GKGCMC | 1 cut(s) | 290 |
| BseX3I | CGGCCG | 2 cut(s) | 41, 255 |
| BseXI | GCAGC | 2 cut(s) | 469, 855 |
| BsgI | GTGCAG | 1 cut(s) | 1021 |
| Bsh1236I | CGCG | 1 cut(s) | 270 |
| Bsh1285I | CGRYCG | 3 cut(s) | 28, 44, 258 |
| BshFI | GGCC | 5 cut(s) | 43, 59, 156, 257, 288 |
| BshNI | GGYRCC | 3 cut(s) | 36, 101, 261 |
| BsiEI | CGRYCG | 3 cut(s) | 28, 44, 258 |
| BsiHKAI | GWGCWC | 3 cut(s) | 337, 358, 978 |
| BsiHKCI | CYCGRG | 1 cut(s) | 960 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 30, 77, 152, 274, 299, 350, 1053 |
| BsmI | GAATGC | 2 cut(s) | 230, 898 |
| BsnI | GGCC | 5 cut(s) | 43, 59, 156, 257, 288 |
| BsoBI | CYCGRG | 1 cut(s) | 960 |
| Bsp120I | GGGCCC | 1 cut(s) | 286 |
| Bsp1286I | GDGCHC | 4 cut(s) | 290, 337, 358, 978 |
| Bsp143I | GATC | 4 cut(s) | 633, 774, 876, 907 |
| BspANI | GGCC | 5 cut(s) | 43, 59, 156, 257, 288 |
| BspCNI | CTCAG | 2 cut(s) | 784, 1014 |
| BspFNI | CGCG | 1 cut(s) | 270 |
| BspLI | GGNNCC | 6 cut(s) | 38, 103, 263, 288, 312, 1028 |
| BspMAI | CTGCAG | 1 cut(s) | 873 |
| BspPI | GGATC | 1 cut(s) | 641 |
| BspT107I | GGYRCC | 3 cut(s) | 36, 101, 261 |
| BsrFI | RCCGGY | 4 cut(s) | 23, 39, 253, 984 |
| BsrI | ACTGG | 4 cut(s) | 157, 220, 634, 1061 |
| BssAI | RCCGGY | 4 cut(s) | 23, 39, 253, 984 |
| BssECI | CCNNGG | 3 cut(s) | 268, 314, 1014 |
| BssMI | GATC | 4 cut(s) | 633, 774, 876, 907 |
| BssSI | CACGAG | 1 cut(s) | 722 |
| BssT1I | CCWWGG | 1 cut(s) | 1014 |
| Bst2BI | CACGAG | 1 cut(s) | 722 |
| Bst2UI | CCWGG | 1 cut(s) | 153 |
| Bst4CI | ACNGT | 4 cut(s) | 382, 505, 938, 973 |
| BstC8I | GCNNGC | 2 cut(s) | 563, 986 |
| BstDEI | CTNAG | 3 cut(s) | 566, 771, 1022 |
| BstDSI | CCRYGG | 1 cut(s) | 268 |
| BstEII | GGTNACC | 1 cut(s) | 1087 |
| BstF5I | GGATG | 2 cut(s) | 61, 442 |
| BstFNI | CGCG | 1 cut(s) | 270 |
| BstH2I | RGCGCY | 1 cut(s) | 24 |
| BstHHI | GCGC | 1 cut(s) | 23 |
| BstKTI | GATC | 4 cut(s) | 636, 777, 879, 910 |
| BstMBI | GATC | 4 cut(s) | 633, 774, 876, 907 |
| BstMCI | CGRYCG | 3 cut(s) | 28, 44, 258 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 27, 43, 49, 1106 |
| BstNI | CCWGG | 1 cut(s) | 153 |
| BstNSI | RCATGY | 2 cut(s) | 994, 1000 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 594 |
| BstPI | GGTNACC | 1 cut(s) | 1087 |
| BstSCI | CCNGG | 8 cut(s) | 151, 257, 298, 313, 349, 448, 490, 761 |
| BstSFI | CTRYAG | 2 cut(s) | 869, 1051 |
| BstSLI | GKGCMC | 1 cut(s) | 290 |
| BstUI | CGCG | 1 cut(s) | 270 |
| BstV1I | GCAGC | 2 cut(s) | 469, 855 |
| BstV2I | GAAGAC | 1 cut(s) | 383 |
| BstX2I | RGATCY | 1 cut(s) | 876 |
| BstYI | RGATCY | 1 cut(s) | 876 |
| BstZI | CGGCCG | 2 cut(s) | 41, 255 |
| BsuRI | GGCC | 5 cut(s) | 43, 59, 156, 257, 288 |
| BtgI | CCRYGG | 1 cut(s) | 268 |
| BtsCI | GGATG | 2 cut(s) | 61, 442 |
| BtsI | GCAGTG | 2 cut(s) | 792, 1009 |
| BtsIMutI | CAGTG | 2 cut(s) | 792, 1009 |
| Cac8I | GCNNGC | 2 cut(s) | 563, 986 |
| CfoI | GCGC | 1 cut(s) | 23 |
| Cfr10I | RCCGGY | 4 cut(s) | 23, 39, 253, 984 |
| Cfr13I | GGNCC | 4 cut(s) | 58, 191, 286, 287 |
| Cfr42I | CCGCGG | 1 cut(s) | 271 |
| Csp6I | GTAC | 5 cut(s) | 160, 223, 262, 322, 814 |
| CviAII | CATG | 4 cut(s) | 283, 508, 991, 997 |
| CviQI | GTAC | 5 cut(s) | 160, 223, 262, 322, 814 |
| DdeI | CTNAG | 3 cut(s) | 566, 771, 1022 |
| DpnI | GATC | 4 cut(s) | 635, 776, 878, 909 |
| DpnII | GATC | 4 cut(s) | 633, 774, 876, 907 |
| EaeI | YGGCCR | 2 cut(s) | 41, 255 |
| EagI | CGGCCG | 2 cut(s) | 41, 255 |
| EciI | GGCGGA | 2 cut(s) | 39, 285 |
| EclXI | CGGCCG | 2 cut(s) | 41, 255 |
| Eco130I | CCWWGG | 1 cut(s) | 1014 |
| Eco24I | GRGCYC | 1 cut(s) | 290 |
| Eco47I | GGWCC | 1 cut(s) | 191 |
| Eco52I | CGGCCG | 2 cut(s) | 41, 255 |
| Eco57I | CTGAAG | 1 cut(s) | 732 |
| Eco88I | CYCGRG | 1 cut(s) | 960 |
| Eco91I | GGTNACC | 1 cut(s) | 1087 |
| EcoO109I | RGGNCCY | 1 cut(s) | 287 |
| EcoO65I | GGTNACC | 1 cut(s) | 1087 |
| EcoRII | CCWGG | 1 cut(s) | 151 |
| EcoT14I | CCWWGG | 1 cut(s) | 1014 |
| EcoT38I | GRGCYC | 1 cut(s) | 290 |
| ErhI | CCWWGG | 1 cut(s) | 1014 |
| FaeI | CATG | 4 cut(s) | 286, 511, 994, 1000 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 545, 577 |
| FatI | CATG | 4 cut(s) | 282, 507, 990, 996 |
| FauI | CCCGC | 3 cut(s) | 126, 266, 816 |
| FbaI | TGATCA | 1 cut(s) | 907 |
| Fnu4HI | GCNGC | 6 cut(s) | 44, 245, 271, 483, 486, 869 |
| FokI | GGATG | 2 cut(s) | 48, 449 |
| FriOI | GRGCYC | 1 cut(s) | 290 |
| Fsp4HI | GCNGC | 6 cut(s) | 44, 245, 271, 483, 486, 869 |
| GlaI | GCGC | 1 cut(s) | 22 |
| GluI | GCNGC | 6 cut(s) | 44, 245, 271, 483, 486, 869 |
| HaeII | RGCGCY | 1 cut(s) | 24 |
| HaeIII | GGCC | 5 cut(s) | 43, 59, 156, 257, 288 |
| HhaI | GCGC | 1 cut(s) | 23 |
| Hin1II | CATG | 4 cut(s) | 286, 511, 994, 1000 |
| Hin6I | GCGC | 1 cut(s) | 21 |
| HinP1I | GCGC | 1 cut(s) | 21 |
| HincII | GTYRAC | 1 cut(s) | 666 |
| HindII | GTYRAC | 1 cut(s) | 666 |
| HindIII | AAGCTT | 1 cut(s) | 559 |
| HinfI | GANTC | 4 cut(s) | 6, 416, 445, 743 |
| HphI | GGTGA | 7 cut(s) | 99, 689, 715, 746, 821, 917, 1099 |
| Hpy166II | GTNNAC | 2 cut(s) | 666, 737 |
| Hpy188I | TCNGA | 6 cut(s) | 11, 375, 748, 774, 955, 1023 |
| Hpy188III | TCNNGA | 6 cut(s) | 391, 409, 624, 724, 962, 1030 |
| Hpy8I | GTNNAC | 2 cut(s) | 666, 737 |
| HpyAV | CCTTC | 8 cut(s) | 356, 406, 478, 630, 700, 725, 793, 896 |
| HpyCH4III | ACNGT | 4 cut(s) | 382, 505, 938, 973 |
| HpyCH4IV | ACGT | 1 cut(s) | 739 |
| HpyCH4V | TGCA | 6 cut(s) | 230, 530, 871, 896, 996, 1002 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 27, 43, 49, 1106 |
| HpyF3I | CTNAG | 3 cut(s) | 566, 771, 1022 |
| HpySE526I | ACGT | 1 cut(s) | 739 |
| Hsp92II | CATG | 4 cut(s) | 286, 511, 994, 1000 |
| HspAI | GCGC | 1 cut(s) | 21 |
| KpnI | GGTACC | 1 cut(s) | 265 |
| KroI | GCCGGC | 1 cut(s) | 984 |
| KroNI | GCCGGC | 1 cut(s) | 986 |
| Ksp22I | TGATCA | 1 cut(s) | 907 |
| KspI | CCGCGG | 1 cut(s) | 271 |
| Kzo9I | GATC | 4 cut(s) | 633, 774, 876, 907 |
| LmnI | GCTCC | 4 cut(s) | 340, 361, 981, 1097 |
| Lsp1109I | GCAGC | 2 cut(s) | 469, 855 |
| LweI | GCATC | 4 cut(s) | 379, 469, 517, 1031 |
| MaeII | ACGT | 1 cut(s) | 739 |
| MaeIII | GTNAC | 4 cut(s) | 92, 382, 677, 1087 |
| MalI | GATC | 4 cut(s) | 635, 776, 878, 909 |
| MboI | GATC | 4 cut(s) | 633, 774, 876, 907 |
| MboII | GAAGA | 2 cut(s) | 388, 536 |
| MfeI | CAATTG | 1 cut(s) | 304 |
| MflI | RGATCY | 1 cut(s) | 876 |
| MhlI | GDGCHC | 4 cut(s) | 290, 337, 358, 978 |
| MluCI | AATT | 4 cut(s) | 179, 304, 754, 942 |
| MlyI | GAGTC | 1 cut(s) | 410 |
| MroNI | GCCGGC | 1 cut(s) | 984 |
| MseI | TTAA | 2 cut(s) | 537, 576 |
| MslI | CAYNNNNRTG | 1 cut(s) | 995 |
| MspA1I | CMGCKG | 1 cut(s) | 270 |
| MspR9I | CCNGG | 8 cut(s) | 153, 259, 300, 315, 351, 450, 492, 763 |
| MunI | CAATTG | 1 cut(s) | 304 |
| Mva1269I | GAATGC | 2 cut(s) | 230, 898 |
| MvaI | CCWGG | 1 cut(s) | 153 |
| MvnI | CGCG | 1 cut(s) | 270 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 27, 43, 49, 1106 |
| NaeI | GCCGGC | 1 cut(s) | 986 |
| NciI | CCSGG | 7 cut(s) | 259, 300, 315, 351, 450, 492, 763 |
| NdeII | GATC | 4 cut(s) | 633, 774, 876, 907 |
| NgoMIV | GCCGGC | 1 cut(s) | 984 |
| NlaIII | CATG | 4 cut(s) | 286, 511, 994, 1000 |
| NlaIV | GGNNCC | 6 cut(s) | 38, 103, 263, 288, 312, 1028 |
| NmuCI | GTSAC | 2 cut(s) | 677, 1087 |
| NspI | RCATGY | 2 cut(s) | 994, 1000 |
| PaeR7I | CTCGAG | 1 cut(s) | 960 |
| PciI | ACATGT | 1 cut(s) | 990 |
| PctI | GAATGC | 2 cut(s) | 230, 898 |
| PdiI | GCCGGC | 1 cut(s) | 986 |
| PfeI | GAWTC | 3 cut(s) | 6, 445, 743 |
| PkrI | GCNGC | 6 cut(s) | 45, 246, 272, 484, 487, 870 |
| PleI | GAGTC | 1 cut(s) | 410 |
| PpsI | GAGTC | 1 cut(s) | 410 |
| PscI | ACATGT | 1 cut(s) | 990 |
| PshAI | GACNNNNGTC | 1 cut(s) | 594 |
| Psp6I | CCWGG | 1 cut(s) | 151 |
| PspEI | GGTNACC | 1 cut(s) | 1087 |
| PspGI | CCWGG | 1 cut(s) | 151 |
| PspN4I | GGNNCC | 6 cut(s) | 38, 103, 263, 288, 312, 1028 |
| PspOMI | GGGCCC | 1 cut(s) | 286 |
| PspPI | GGNCC | 4 cut(s) | 58, 191, 286, 287 |
| PstI | CTGCAG | 1 cut(s) | 873 |
| PsuI | RGATCY | 1 cut(s) | 876 |
| RsaI | GTAC | 5 cut(s) | 161, 224, 263, 323, 815 |
| RsaNI | GTAC | 5 cut(s) | 160, 223, 262, 322, 814 |
| RseI | CAYNNNNRTG | 1 cut(s) | 995 |
| SacII | CCGCGG | 1 cut(s) | 271 |
| SaqAI | TTAA | 2 cut(s) | 537, 576 |
| SatI | GCNGC | 6 cut(s) | 44, 245, 271, 483, 486, 869 |
| Sau3AI | GATC | 4 cut(s) | 633, 774, 876, 907 |
| Sau96I | GGNCC | 4 cut(s) | 58, 191, 286, 287 |
| ScaI | AGTACT | 1 cut(s) | 224 |
| SchI | GAGTC | 1 cut(s) | 410 |
| ScrFI | CCNGG | 8 cut(s) | 153, 259, 300, 315, 351, 450, 492, 763 |
| SduI | GDGCHC | 4 cut(s) | 290, 337, 358, 978 |
| SfaNI | GCATC | 4 cut(s) | 379, 469, 517, 1031 |
| SfcI | CTRYAG | 2 cut(s) | 869, 1051 |
| Sfr274I | CTCGAG | 1 cut(s) | 960 |
| Sfr303I | CCGCGG | 1 cut(s) | 271 |
| SgrBI | CCGCGG | 1 cut(s) | 271 |
| SinI | GGWCC | 1 cut(s) | 191 |
| SlaI | CTCGAG | 1 cut(s) | 960 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 995 |
| SmlI | CTYRAG | 1 cut(s) | 960 |
| SmoI | CTYRAG | 1 cut(s) | 960 |
| Sse9I | AATT | 4 cut(s) | 179, 304, 754, 942 |
| StyD4I | CCNGG | 8 cut(s) | 151, 257, 298, 313, 349, 448, 490, 761 |
| StyI | CCWWGG | 1 cut(s) | 1014 |
| TaaI | ACNGT | 4 cut(s) | 382, 505, 938, 973 |
| TaiI | ACGT | 1 cut(s) | 742 |
| TaqI | TCGA | 2 cut(s) | 636, 961 |
| TasI | AATT | 4 cut(s) | 179, 304, 754, 942 |
| TatI | WGTACW | 2 cut(s) | 222, 813 |
| TauI | GCSGC | 4 cut(s) | 46, 247, 273, 488 |
| TfiI | GAWTC | 3 cut(s) | 6, 445, 743 |
| Tru1I | TTAA | 2 cut(s) | 537, 576 |
| Tru9I | TTAA | 2 cut(s) | 537, 576 |
| TscAI | CASTG | 2 cut(s) | 792, 1009 |
| TseFI | GTSAC | 2 cut(s) | 677, 1087 |
| TseI | GCWGC | 2 cut(s) | 482, 868 |
| Tsp45I | GTSAC | 2 cut(s) | 677, 1087 |
| TspDTI | ATGAA | 3 cut(s) | 271, 744, 936 |
| TspGWI | ACGGA | 1 cut(s) | 204 |
| TspRI | CASTG | 2 cut(s) | 792, 1009 |
| VpaK11BI | GGWCC | 1 cut(s) | 191 |
| XapI | RAATTY | 1 cut(s) | 754 |
| XceI | RCATGY | 2 cut(s) | 994, 1000 |
| XhoI | CTCGAG | 1 cut(s) | 960 |
| ZrmI | AGTACT | 1 cut(s) | 224 |