Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010999

Physical Location & Seq

Genomic Coordinates Forward (+)

27864474 .. 27868392

Gene Structure 3919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g32570.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGACAAATTGCATATTCATAGAATCCGGCCAAGAAGCTAACGAATACACGCTTAACTTTTGGAAAAGAAAGAGGAACCACTCACCAAAGAAGAGGCGCGCTTCACTCATACTCTCTTTCTCTAGTTGTCAGCCCAAAGTCCTTGAAGCTTTGCCTCCGACCAAAATGGCCCTCGTCGGCGTGCTTGCTTTACAGGGCTCTTACAACGAACACATAGCAGTGCTGAGAAGGCTTGGAGTGAAGGGGGTGGAGATAAAGAAACCAGAGCAACTCGAGAACTTGGCCTCACTCATAATCCCTGGAGGAGAGAGCACCACCATGGCTAAGCTTGCCGAGTATCACAACCTGTTTCCTGCTTTGCGTGAGTTTGTGAAGATGGGGAAGCCTGTCTGGGGAACCTGTGCAGGGCTTATTTTCTTAGCAAACAGAGCTACAGGACAGAAGATAGGAGGACAGGAACTTGTTGGAGGCCTAGATTGCATGGTTCACAGAAATTTCTTTGGTAGTCAGATTCAAAGTTTTGAGACAGAACTTTCAGTACCAGAACTTGCTTCGAAGGAAGGTGGTCCTGAAGTATTTCGTGGAGTTTTCATCCGTGCTCCTGCAATCCTTGAGGTAGGACCAGGAGTTGAAGTCCTGGCTGATTATCCTGTCCCAGCTAATAAGTGGAAGAATTCAAATCCTGGTGTTGAAGGTGACAAGGAAAATTCTGGGTCTGAGAAGAAAGTGATTGTAGCTGTCAGACAAGGGAATTTGCTAGCGACTGCCTTCCACCCTGAACTGACAGCAGATACTCGATGGCATAGTTACTTCCTGAAGATGGCCACTGAAACCGAAGGGGCCTCAAGTAGCATTGTTTCTGTTGGTGCAGATCTTGATTTTAACAAACAGACAAAGATTGACCTCCCTGTATTTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004359 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008614 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0032991 GO:0034641 GO:0042364 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0046982 GO:0046983 GO:0051186 GO:0051188 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1903600

KEGG Pathways

Metabolic & Signaling

ko00750 map00750

Pfam Domains

Protein Families

SNO

Protein Analysis

307

Amino Acids

33.48

Weight (kDa)

8.57

Isoelectric Point (pI)

50.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNO	PF01174	61 - 275	1.1e-49	SNO glutamine amidotransferase family
GATase_3	PF07685	71 - 160	5.4e-08	CobB/CobQ-like glutamine amidotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60540
fragaria_vesca	FvH4_3g32570 FvH4_3g32570 FvH4_3g32570 FvH4_3g32570 FvH4_3g32570 FvH4_3g32570
malus_domestica	MD03G1113000.v1.1 MD11G1133800.v1.1
prunus_persica	Prupe.6G100100_v2.0.a1
pyrus_communis	pycom11g11030
rosa_chinensis	RchiOBHm_Chr5g0059641
rosa_laevigata	RLG00000035317
rosa_multiflora	Rmu_sc0001146.1_g000002
rosa_roxburghii	Rroxscaffold_1G00020970
rosa_rugosa	Rorug05G0323800
rosa_samantha	Rh5AG389100 Rh5BG400800 Rh5DG417200
rosa_wichuraiana	Rw5G036630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	99
AcoI	YGGCCR	2 cut(s)	28, 822
AcsI	RAATTY	4 cut(s)	493, 673, 706, 751
AcuI	CTGAAG	2 cut(s)	591, 836
AfaI	GTAC	1 cut(s)	540
AfiI	CCNNNNNNNGG	3 cut(s)	392, 405, 820
AgsI	TTSAA	5 cut(s)	146, 515, 632, 678, 692
AjnI	CCWGG	4 cut(s)	298, 622, 636, 682
AluBI	AGCT	6 cut(s)	38, 149, 328, 431, 659, 737
AluI	AGCT	6 cut(s)	38, 149, 328, 431, 659, 737
Alw21I	GWGCWC	2 cut(s)	314, 601
Alw26I	GTCTC	1 cut(s)	518
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	6 cut(s)	28, 168, 282, 469, 822, 840
ApoI	RAATTY	4 cut(s)	493, 673, 706, 751
Asp700I	GAANNNNTTC	1 cut(s)	576
AspLEI	GCGC	2 cut(s)	99, 101
AspS9I	GGNCC	4 cut(s)	169, 566, 620, 840
AsuHPI	GGTGA	2 cut(s)	75, 707
AsuII	TTCGAA	1 cut(s)	554
AsuNHI	GCTAGC	1 cut(s)	757
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	2 cut(s)	566, 620
BalI	TGGCCA	1 cut(s)	824
BanII	GRGCYC	1 cut(s)	200
Bbv12I	GWGCWC	2 cut(s)	314, 601
BccI	CCATC	3 cut(s)	370, 792, 814
BciT130I	CCWGG	4 cut(s)	300, 624, 638, 684
BcoDI	GTCTC	1 cut(s)	518
BfaI	CTAG	3 cut(s)	123, 473, 758
BfmI	CTRYAG	2 cut(s)	432, 917
BglII	AGATCT	1 cut(s)	871
BlpI	GCTNAGC	1 cut(s)	324
Bme1390I	CCNGG	4 cut(s)	300, 624, 638, 684
Bme18I	GGWCC	2 cut(s)	566, 620
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	4 cut(s)	169, 566, 620, 840
BmiI	GGNNCC	3 cut(s)	77, 397, 841
BmrFI	CCNGG	4 cut(s)	300, 624, 638, 684
BmtI	GCTAGC	1 cut(s)	761
BpmI	CTGGAG	1 cut(s)	321
Bpu1102I	GCTNAGC	1 cut(s)	324
Bpu14I	TTCGAA	1 cut(s)	554
BpuEI	CTTGAG	2 cut(s)	632, 829
BsaJI	CCNNGG	2 cut(s)	298, 318
BsaXI	ACNNNNNCTCC	2 cut(s)	618, 648
Bsc4I	CCNNNNNNNGG	3 cut(s)	392, 405, 820
BseBI	CCWGG	4 cut(s)	300, 624, 638, 684
BseDI	CCNNGG	2 cut(s)	298, 318
BseGI	GGATG	1 cut(s)	591
BseLI	CCNNNNNNNGG	3 cut(s)	392, 405, 820
BseMII	CTCAG	2 cut(s)	215, 708
BsePI	GCGCGC	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	318
BseYI	CCCAGC	1 cut(s)	655
BsgI	GTGCAG	2 cut(s)	423, 888
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	6 cut(s)	30, 170, 284, 471, 824, 842
BsiHKAI	GWGCWC	2 cut(s)	314, 601
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	638
BslI	CCNNNNNNNGG	3 cut(s)	392, 405, 820
BsmAI	GTCTC	1 cut(s)	518
BsmFI	GGGAC	1 cut(s)	638
BsnI	GGCC	6 cut(s)	30, 170, 284, 471, 824, 842
BsoBI	CYCGRG	1 cut(s)	272
Bsp119I	TTCGAA	1 cut(s)	554
Bsp1286I	GDGCHC	3 cut(s)	200, 314, 601
Bsp143I	GATC	1 cut(s)	871
Bsp1720I	GCTNAGC	1 cut(s)	324
Bsp19I	CCATGG	1 cut(s)	318
BspANI	GGCC	6 cut(s)	30, 170, 284, 471, 824, 842
BspCNI	CTCAG	2 cut(s)	216, 709
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	3 cut(s)	77, 397, 841
BspOI	GCTAGC	1 cut(s)	761
BspT104I	TTCGAA	1 cut(s)	554
BssECI	CCNNGG	2 cut(s)	298, 318
BssHII	GCGCGC	1 cut(s)	97
BssMI	GATC	1 cut(s)	871
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	4 cut(s)	300, 624, 638, 684
Bst6I	CTCTTC	1 cut(s)	86
BstBI	TTCGAA	1 cut(s)	554
BstC8I	GCNNGC	5 cut(s)	99, 182, 186, 330, 759
BstDEI	CTNAG	4 cut(s)	224, 324, 418, 717
BstDSI	CCRYGG	1 cut(s)	318
BstF5I	GGATG	1 cut(s)	591
BstFNI	CGCG	1 cut(s)	99
BstHHI	GCGC	2 cut(s)	99, 101
BstKTI	GATC	1 cut(s)	874
BstMAI	GTCTC	1 cut(s)	518
BstMBI	GATC	1 cut(s)	871
BstMWI	GCNNNNNNNGC	4 cut(s)	229, 329, 428, 477
BstNI	CCWGG	4 cut(s)	300, 624, 638, 684
BstSCI	CCNGG	4 cut(s)	298, 622, 636, 682
BstSFI	CTRYAG	2 cut(s)	432, 917
BstUI	CGCG	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	871
BstYI	RGATCY	1 cut(s)	871
BsuRI	GGCC	6 cut(s)	30, 170, 284, 471, 824, 842
BtgI	CCRYGG	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	591
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	2 cut(s)	225, 825
Cac8I	GCNNGC	5 cut(s)	99, 182, 186, 330, 759
CfoI	GCGC	2 cut(s)	99, 101
Cfr13I	GGNCC	4 cut(s)	169, 566, 620, 840
Csp6I	GTAC	1 cut(s)	539
CviAII	CATG	2 cut(s)	319, 481
CviQI	GTAC	1 cut(s)	539
DdeI	CTNAG	4 cut(s)	224, 324, 418, 717
DpnI	GATC	1 cut(s)	873
DpnII	GATC	1 cut(s)	871
EaeI	YGGCCR	2 cut(s)	28, 822
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	318
Eco147I	AGGCCT	1 cut(s)	471
Eco24I	GRGCYC	1 cut(s)	200
Eco47I	GGWCC	2 cut(s)	566, 620
Eco57I	CTGAAG	2 cut(s)	591, 836
Eco88I	CYCGRG	1 cut(s)	272
EcoO109I	RGGNCCY	1 cut(s)	840
EcoRI	GAATTC	1 cut(s)	673
EcoRII	CCWGG	4 cut(s)	298, 622, 636, 682
EcoT14I	CCWWGG	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	2 cut(s)	322, 484
FaiI	YATR	9 cut(s)	14, 20, 110, 215, 293, 320, 482, 804, 919
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	2 cut(s)	318, 480
FokI	GGATG	1 cut(s)	578
FriOI	GRGCYC	1 cut(s)	200
FspBI	CTAG	3 cut(s)	123, 473, 758
GlaI	GCGC	2 cut(s)	98, 100
GsaI	CCCAGC	1 cut(s)	659
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	6 cut(s)	30, 170, 284, 471, 824, 842
HapII	CCGG	1 cut(s)	27
HhaI	GCGC	2 cut(s)	99, 101
Hin1II	CATG	2 cut(s)	322, 484
Hin6I	GCGC	2 cut(s)	97, 99
HinP1I	GCGC	2 cut(s)	97, 99
HindIII	AAGCTT	2 cut(s)	147, 326
HinfI	GANTC	2 cut(s)	23, 511
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	2 cut(s)	75, 707
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188I	TCNGA	4 cut(s)	159, 510, 718, 743
Hpy188III	TCNNGA	4 cut(s)	274, 569, 814, 875
Hpy8I	GTNNAC	1 cut(s)	487
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	7 cut(s)	222, 235, 550, 554, 686, 778, 830
HpyCH4V	TGCA	5 cut(s)	12, 404, 480, 605, 869
HpyF10VI	GCNNNNNNNGC	4 cut(s)	229, 329, 428, 477
HpyF3I	CTNAG	4 cut(s)	224, 324, 418, 717
Hsp92II	CATG	2 cut(s)	322, 484
HspAI	GCGC	2 cut(s)	97, 99
Kzo9I	GATC	1 cut(s)	871
LmnI	GCTCC	1 cut(s)	604
MaeI	CTAG	3 cut(s)	123, 473, 758
MaeIII	GTNAC	2 cut(s)	695, 806
MalI	GATC	1 cut(s)	873
MboI	GATC	1 cut(s)	871
MboII	GAAGA	6 cut(s)	103, 385, 454, 682, 733, 829
MflI	RGATCY	1 cut(s)	871
MhlI	GDGCHC	3 cut(s)	200, 314, 601
MlsI	TGGCCA	1 cut(s)	824
MluCI	AATT	5 cut(s)	7, 493, 673, 706, 751
MluNI	TGGCCA	1 cut(s)	824
MmeI	TCCRAC	2 cut(s)	182, 445
Mox20I	TGGCCA	1 cut(s)	824
MroXI	GAANNNNTTC	1 cut(s)	576
MscI	TGGCCA	1 cut(s)	824
MseI	TTAA	2 cut(s)	54, 882
MslI	CAYNNNNRTG	2 cut(s)	218, 317
Msp20I	TGGCCA	1 cut(s)	824
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	4 cut(s)	300, 624, 638, 684
MvaI	CCWGG	4 cut(s)	300, 624, 638, 684
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	4 cut(s)	229, 329, 428, 477
NcoI	CCATGG	1 cut(s)	318
NdeII	GATC	1 cut(s)	871
NheI	GCTAGC	1 cut(s)	757
NlaIII	CATG	2 cut(s)	322, 484
NlaIV	GGNNCC	3 cut(s)	77, 397, 841
NmeAIII	GCCGAG	1 cut(s)	358
NmuCI	GTSAC	1 cut(s)	695
NspV	TTCGAA	1 cut(s)	554
PaeR7I	CTCGAG	1 cut(s)	272
PauI	GCGCGC	1 cut(s)	97
PceI	AGGCCT	1 cut(s)	471
PdmI	GAANNNNTTC	1 cut(s)	576
PfeI	GAWTC	2 cut(s)	23, 511
Psp6I	CCWGG	4 cut(s)	298, 622, 636, 682
PspFI	CCCAGC	1 cut(s)	655
PspGI	CCWGG	4 cut(s)	298, 622, 636, 682
PspN4I	GGNNCC	3 cut(s)	77, 397, 841
PspPI	GGNCC	4 cut(s)	169, 566, 620, 840
PsrI	GAACNNNNNNTAC	2 cut(s)	522, 554
PsuI	RGATCY	1 cut(s)	871
PteI	GCGCGC	1 cut(s)	97
RsaI	GTAC	1 cut(s)	540
RsaNI	GTAC	1 cut(s)	539
RseI	CAYNNNNRTG	2 cut(s)	218, 317
SaqAI	TTAA	2 cut(s)	54, 882
Sau3AI	GATC	1 cut(s)	871
Sau96I	GGNCC	4 cut(s)	169, 566, 620, 840
ScrFI	CCNGG	4 cut(s)	300, 624, 638, 684
SduI	GDGCHC	3 cut(s)	200, 314, 601
SfcI	CTRYAG	2 cut(s)	432, 917
Sfr274I	CTCGAG	1 cut(s)	272
SfuI	TTCGAA	1 cut(s)	554
SinI	GGWCC	2 cut(s)	566, 620
SlaI	CTCGAG	1 cut(s)	272
SmiMI	CAYNNNNRTG	2 cut(s)	218, 317
SmlI	CTYRAG	3 cut(s)	272, 611, 844
SmoI	CTYRAG	3 cut(s)	272, 611, 844
Sse9I	AATT	5 cut(s)	7, 493, 673, 706, 751
SseBI	AGGCCT	1 cut(s)	471
SspMI	CTAG	3 cut(s)	123, 473, 758
StuI	AGGCCT	1 cut(s)	471
StyD4I	CCNGG	4 cut(s)	298, 622, 636, 682
StyI	CCWWGG	1 cut(s)	318
TaqI	TCGA	3 cut(s)	273, 554, 796
TasI	AATT	5 cut(s)	7, 493, 673, 706, 751
TfiI	GAWTC	2 cut(s)	23, 511
Tru1I	TTAA	2 cut(s)	54, 882
Tru9I	TTAA	2 cut(s)	54, 882
TscAI	CASTG	2 cut(s)	225, 832
TseFI	GTSAC	1 cut(s)	695
Tsp45I	GTSAC	1 cut(s)	695
TspDTI	ATGAA	2 cut(s)	7, 580
TspGWI	ACGGA	1 cut(s)	584
TspRI	CASTG	2 cut(s)	225, 832
VpaK11BI	GGWCC	2 cut(s)	566, 620
XapI	RAATTY	4 cut(s)	493, 673, 706, 751
XcmI	CCANNNNNNNNNTGG	1 cut(s)	663
XhoI	CTCGAG	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	576
XspI	CTAG	3 cut(s)	123, 473, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.