Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0010999

Physical Location & Seq

Genomic Coordinates Forward (+)

66306796 .. 66310394

Gene Structure 3599 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG417200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCCCTCGTCGGCGTGCTTGCTTTACAGGGCTCTTACAACGAACACATAGCAGTGCTGAGAAGGCTGGGAGTGAAGGGCGTGGAGATAAAGAAACCAGAGCAGCTCGAAAACGTGGCCTCACTCATAATCCCTGGAGGAGAGAGCACCACCATGGCAAAGCTCGCCGAGTACCACAACCTGTTTCCTGCTTTGCGTGAGTTTGTTAAGATGGGGAAGCCTGTTTGGGGAACCTGTGCTGGACTTATATTCTTAGCAAACAGAGCTACAGGACAGAAAATAGGAGGACAGGAACTTGTTGGAGGCCTAGATTGCATGGTTCACAGAAATTTCTTTGGCAGTCAGCTTCAGAGTTTTGAGACAGAACTTTCAGTACCAGAGCTTGCTTCGAAGGAAGGTGGTCCTGAAGTATTTCGTGGAGTTTTCATCCGTGCTCCTGCAATCCTTGAGGTAGGACCACAAGTTGAAGTCCTGGCTGATTATCCTGTCCCAGCTAATAAGTGGAAGGATTCAAATCCTGGTGTTGAAGGCCATGAGGTTTGTGATTGTTCTGCTAACATGGTTCAATATAATCATTCTGTAGTCAAGGCCTTATTGGTTTCAATTAGGTTTGGAGTATTACTGTATTCTTGTTATTTGCTTTTTTCAGAGAACATTTTTCCTTTTCAGATTATCAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004359 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008614 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0032991 GO:0034641 GO:0042364 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0046982 GO:0046983 GO:0051186 GO:0051188 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1903600

KEGG Pathways

Metabolic & Signaling

ko00750 map00750

Pfam Domains

Protein Families

SNO

Protein Analysis

227

Amino Acids

24.84

Weight (kDa)

6.22

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNO	PF01174	6 - 160	2.6e-42	SNO glutamine amidotransferase family
GATase_3	PF07685	16 - 105	1.6e-08	CobB/CobQ-like glutamine amidotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60540
fragaria_vesca	FvH4_3g32570 FvH4_3g32570 FvH4_3g32570 FvH4_3g32570 FvH4_3g32570 FvH4_3g32570
malus_domestica	MD03G1113000.v1.1 MD11G1133800.v1.1
prunus_persica	Prupe.6G100100_v2.0.a1
pyrus_communis	pycom11g11030
rosa_chinensis	RchiOBHm_Chr5g0059641
rosa_laevigata	RLG00000035317
rosa_multiflora	Rmu_sc0001146.1_g000002
rosa_roxburghii	Rroxscaffold_1G00020970
rosa_rugosa	Rorug05G0323800
rosa_samantha	Rh5AG389100 Rh5BG400800 Rh5DG417200
rosa_wichuraiana	Rw5G036630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	328, 677
AcuI	CTGAAG	2 cut(s)	332, 426
AfaI	GTAC	2 cut(s)	173, 375
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	5 cut(s)	467, 513, 527, 566, 603
AjnI	CCWGG	3 cut(s)	133, 471, 517
AluBI	AGCT	6 cut(s)	106, 163, 266, 346, 382, 494
AluI	AGCT	6 cut(s)	106, 163, 266, 346, 382, 494
Alw21I	GWGCWC	2 cut(s)	149, 436
Alw26I	GTCTC	1 cut(s)	353
AoxI	GGCC	5 cut(s)	3, 117, 304, 529, 588
ApeKI	GCWGC	1 cut(s)	103
ApoI	RAATTY	2 cut(s)	328, 677
Asp700I	GAANNNNTTC	1 cut(s)	411
AspS9I	GGNCC	3 cut(s)	4, 401, 455
AsuII	TTCGAA	1 cut(s)	389
AvaII	GGWCC	2 cut(s)	401, 455
BanII	GRGCYC	1 cut(s)	35
Bbv12I	GWGCWC	2 cut(s)	149, 436
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	1 cut(s)	205
BciT130I	CCWGG	3 cut(s)	135, 473, 519
BcoDI	GTCTC	1 cut(s)	353
BfaI	CTAG	1 cut(s)	308
BfmI	CTRYAG	2 cut(s)	267, 579
BisI	GCNGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	105
Bme1390I	CCNGG	3 cut(s)	135, 473, 519
Bme18I	GGWCC	2 cut(s)	401, 455
BmgT120I	GGNCC	3 cut(s)	4, 401, 455
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	3 cut(s)	135, 473, 519
BpmI	CTGGAG	1 cut(s)	156
Bpu14I	TTCGAA	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	467
BsaBI	GATNNNNATC	1 cut(s)	513
BsaJI	CCNNGG	2 cut(s)	133, 153
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	3 cut(s)	135, 473, 519
BseDI	CCNNGG	2 cut(s)	133, 153
BseGI	GGATG	1 cut(s)	426
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMII	CTCAG	1 cut(s)	50
BseRI	GAGGAG	1 cut(s)	153
BseXI	GCAGC	1 cut(s)	115
BseYI	CCCAGC	2 cut(s)	67, 490
BshFI	GGCC	5 cut(s)	5, 119, 306, 531, 590
BsiHKAI	GWGCWC	2 cut(s)	149, 436
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	1 cut(s)	353
BsmFI	GGGAC	1 cut(s)	473
BsnI	GGCC	5 cut(s)	5, 119, 306, 531, 590
Bsp119I	TTCGAA	1 cut(s)	389
Bsp1286I	GDGCHC	3 cut(s)	35, 149, 436
Bsp19I	CCATGG	1 cut(s)	153
BspANI	GGCC	5 cut(s)	5, 119, 306, 531, 590
BspCNI	CTCAG	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	232
BspT104I	TTCGAA	1 cut(s)	389
BssECI	CCNNGG	2 cut(s)	133, 153
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	3 cut(s)	135, 473, 519
Bst4CI	ACNGT	1 cut(s)	624
BstBI	TTCGAA	1 cut(s)	389
BstC8I	GCNNGC	4 cut(s)	17, 21, 165, 384
BstDEI	CTNAG	2 cut(s)	59, 253
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	426
BstMAI	GTCTC	1 cut(s)	353
BstMWI	GCNNNNNNNGC	4 cut(s)	64, 164, 263, 312
BstNI	CCWGG	3 cut(s)	135, 473, 519
BstSCI	CCNGG	3 cut(s)	133, 471, 517
BstSFI	CTRYAG	2 cut(s)	267, 579
BstV1I	GCAGC	1 cut(s)	115
BsuRI	GGCC	5 cut(s)	5, 119, 306, 531, 590
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	426
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	4 cut(s)	17, 21, 165, 384
Cfr13I	GGNCC	3 cut(s)	4, 401, 455
Csp6I	GTAC	2 cut(s)	172, 374
CviAII	CATG	4 cut(s)	154, 316, 533, 559
CviQI	GTAC	2 cut(s)	172, 374
DdeI	CTNAG	2 cut(s)	59, 253
Eco130I	CCWWGG	1 cut(s)	153
Eco147I	AGGCCT	2 cut(s)	306, 590
Eco24I	GRGCYC	1 cut(s)	35
Eco47I	GGWCC	2 cut(s)	401, 455
Eco57I	CTGAAG	2 cut(s)	332, 426
EcoRII	CCWGG	3 cut(s)	133, 471, 517
EcoT14I	CCWWGG	1 cut(s)	153
EcoT38I	GRGCYC	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	4 cut(s)	157, 319, 536, 562
FaiI	YATR	8 cut(s)	50, 128, 155, 248, 317, 534, 560, 570
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	4 cut(s)	153, 315, 532, 558
Fnu4HI	GCNGC	1 cut(s)	104
FokI	GGATG	1 cut(s)	413
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	1 cut(s)	104
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	1 cut(s)	104
GsaI	CCCAGC	2 cut(s)	71, 494
GsuI	CTGGAG	1 cut(s)	156
HaeIII	GGCC	5 cut(s)	5, 119, 306, 531, 590
Hin1II	CATG	4 cut(s)	157, 319, 536, 562
HinfI	GANTC	1 cut(s)	509
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	3 cut(s)	351, 649, 669
Hpy188III	TCNNGA	1 cut(s)	404
Hpy8I	GTNNAC	1 cut(s)	322
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	6 cut(s)	57, 70, 385, 389, 499, 521
HpyCH4III	ACNGT	1 cut(s)	624
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	2 cut(s)	315, 440
HpyF10VI	GCNNNNNNNGC	4 cut(s)	64, 164, 263, 312
HpyF3I	CTNAG	2 cut(s)	59, 253
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	4 cut(s)	157, 319, 536, 562
LmnI	GCTCC	1 cut(s)	439
Lsp1109I	GCAGC	1 cut(s)	115
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	1 cut(s)	114
MhlI	GDGCHC	3 cut(s)	35, 149, 436
MluCI	AATT	3 cut(s)	328, 603, 677
MmeI	TCCRAC	1 cut(s)	280
MnlI	CCTC	7 cut(s)	17, 130, 131, 278, 296, 442, 529
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	1 cut(s)	207
MslI	CAYNNNNRTG	2 cut(s)	53, 152
MspR9I	CCNGG	3 cut(s)	135, 473, 519
MvaI	CCWGG	3 cut(s)	135, 473, 519
MwoI	GCNNNNNNNGC	4 cut(s)	64, 164, 263, 312
NcoI	CCATGG	1 cut(s)	153
NlaIII	CATG	4 cut(s)	157, 319, 536, 562
NlaIV	GGNNCC	1 cut(s)	232
NmeAIII	GCCGAG	1 cut(s)	193
NspV	TTCGAA	1 cut(s)	389
PceI	AGGCCT	2 cut(s)	306, 590
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	509
PkrI	GCNGC	1 cut(s)	105
Psp6I	CCWGG	3 cut(s)	133, 471, 517
PspFI	CCCAGC	2 cut(s)	67, 490
PspGI	CCWGG	3 cut(s)	133, 471, 517
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	3 cut(s)	4, 401, 455
PsrI	GAACNNNNNNTAC	2 cut(s)	357, 389
RsaI	GTAC	2 cut(s)	173, 375
RsaNI	GTAC	2 cut(s)	172, 374
RseI	CAYNNNNRTG	2 cut(s)	53, 152
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	1 cut(s)	104
Sau96I	GGNCC	3 cut(s)	4, 401, 455
ScrFI	CCNGG	3 cut(s)	135, 473, 519
SduI	GDGCHC	3 cut(s)	35, 149, 436
SfcI	CTRYAG	2 cut(s)	267, 579
SfuI	TTCGAA	1 cut(s)	389
SinI	GGWCC	2 cut(s)	401, 455
SmiMI	CAYNNNNRTG	2 cut(s)	53, 152
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	3 cut(s)	328, 603, 677
SseBI	AGGCCT	2 cut(s)	306, 590
SspMI	CTAG	1 cut(s)	308
StuI	AGGCCT	2 cut(s)	306, 590
StyD4I	CCNGG	3 cut(s)	133, 471, 517
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	624
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	2 cut(s)	108, 389
TasI	AATT	3 cut(s)	328, 603, 677
TfiI	GAWTC	1 cut(s)	509
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	1 cut(s)	60
TseI	GCWGC	1 cut(s)	103
TspDTI	ATGAA	1 cut(s)	415
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	1 cut(s)	60
VpaK11BI	GGWCC	2 cut(s)	401, 455
XapI	RAATTY	2 cut(s)	328, 677
XcmI	CCANNNNNNNNNTGG	1 cut(s)	498
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.