Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010999

Physical Location & Seq

Genomic Coordinates Reverse (-)

6968306 .. 6972080

Gene Structure 3775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G100100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCCCTCGTCGGCGTGCTTGCTTTACAGGGGTCTTTCAACGAACACATAGCAGCGCTGAGAAGGCTTGGGGTGAAAGGCGTGGAGATAAGGAAACCAGAGCAGCTTGAAACCGTGGCTTCCCTTATTATCCCTGGAGGAGAGAGCACCACCATGGCTAAGCTCGCTGAGTACCACAATCTGTTTCCTGCTTTGCGTGAGTTTGTCAAAATGGGGAAGCCTGTTTGGGGAACCTGTGCAGGGCTTATCTTCTTAGCAAACAAAGCTACAGGACAGAAAATAGGAGGACAGGAACTTATTGGAGGCCTAGATTGCACTGTCCACAGGAACTTCTTTGGCAGTCAGATTCGAAGCTTTGAGGCAGAACTTGCAGTACCAGAGCTTGCCGCTAAGGAAGGTGGTCCTGAAGTATTTCGTGGAGTTTTCATCCGTGCTCCTGCTATCCTTGACGTAGGGCCAGAAGTTAAAGTGCTGGCTGATTATCTTGTCCCGTCTAATGAGGCGTTGGATTCAAATTCTGCTGTTGAAGCACAAGAGGAGAATACTGGGTCTGAGAAGAAAGTGATTGTAGCAGTTAGACAAAGGAATCTGTTGGCGACTGCCTTCCATCCTGAACTGACAGCAGACACTCGATGGCATAGTTACTTCTTGAAGATGGCAACTGAAACTGGAGAAGAGGCCTCCAGTAGCATTGTTGCTGTTGGAGCAGATCTGAATCTTGACCAACAACCAAAGATTGACCTCCCTATATTTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004359 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008614 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0032991 GO:0034641 GO:0042364 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0046982 GO:0046983 GO:0051186 GO:0051188 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1903600

KEGG Pathways

Metabolic & Signaling

ko00750 map00750

Pfam Domains

Protein Families

SNO

Protein Analysis

253

Amino Acids

27.19

Weight (kDa)

5.35

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60540
fragaria_vesca	FvH4_3g32570 FvH4_3g32570 FvH4_3g32570 FvH4_3g32570 FvH4_3g32570 FvH4_3g32570
malus_domestica	MD03G1113000.v1.1 MD11G1133800.v1.1
prunus_persica	Prupe.6G100100_v2.0.a1
pyrus_communis	pycom11g11030
rosa_chinensis	RchiOBHm_Chr5g0059641
rosa_laevigata	RLG00000035317
rosa_multiflora	Rmu_sc0001146.1_g000002
rosa_roxburghii	Rroxscaffold_1G00020970
rosa_rugosa	Rorug05G0323800
rosa_samantha	Rh5AG389100 Rh5BG400800 Rh5DG417200
rosa_wichuraiana	Rw5G036630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	387
AcsI	RAATTY	1 cut(s)	514
AcuI	CTGAAG	1 cut(s)	426
AfaI	GTAC	2 cut(s)	173, 375
AfeI	AGCGCT	1 cut(s)	57
AfiI	CCNNNNNNNGG	2 cut(s)	227, 240
AgsI	TTSAA	6 cut(s)	40, 110, 513, 527, 652, 755
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	5 cut(s)	106, 163, 266, 354, 382
AluI	AGCT	5 cut(s)	106, 163, 266, 354, 382
Alw21I	GWGCWC	2 cut(s)	149, 436
Aor51HI	AGCGCT	1 cut(s)	57
AoxI	GGCC	4 cut(s)	3, 304, 455, 678
ApeKI	GCWGC	2 cut(s)	53, 103
ApoI	RAATTY	1 cut(s)	514
Asp700I	GAANNNNTTC	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	3 cut(s)	4, 401, 455
AsuHPI	GGTGA	1 cut(s)	85
AsuII	TTCGAA	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	401
Bbv12I	GWGCWC	2 cut(s)	149, 436
BbvI	GCAGC	2 cut(s)	65, 115
BccI	CCATC	3 cut(s)	615, 627, 649
BciT130I	CCWGG	1 cut(s)	135
BfaI	CTAG	1 cut(s)	308
BfmI	CTRYAG	1 cut(s)	267
BfoI	RGCGCY	1 cut(s)	59
BglII	AGATCT	1 cut(s)	709
BisI	GCNGC	3 cut(s)	54, 104, 387
BlpI	GCTNAGC	1 cut(s)	159
BlsI	GCNGC	3 cut(s)	55, 105, 388
Bme1390I	CCNGG	1 cut(s)	135
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	3 cut(s)	4, 401, 455
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	135
BmrI	ACTGGG	1 cut(s)	555
BmuI	ACTGGG	1 cut(s)	555
BpmI	CTGGAG	3 cut(s)	156, 667, 690
Bpu10I	CCTNAGC	1 cut(s)	390
Bpu1102I	GCTNAGC	1 cut(s)	159
Bpu14I	TTCGAA	1 cut(s)	349
BsaBI	GATNNNNATC	1 cut(s)	714
BsaJI	CCNNGG	3 cut(s)	114, 133, 153
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 240
Bse1I	ACTGG	3 cut(s)	550, 673, 684
Bse8I	GATNNNNATC	1 cut(s)	714
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	3 cut(s)	114, 133, 153
BseGI	GGATG	2 cut(s)	426, 607
BseJI	GATNNNNATC	1 cut(s)	714
BseLI	CCNNNNNNNGG	2 cut(s)	227, 240
BseMII	CTCAG	3 cut(s)	50, 159, 543
BseNI	ACTGG	3 cut(s)	550, 673, 684
BseRI	GAGGAG	2 cut(s)	153, 551
BseXI	GCAGC	2 cut(s)	65, 115
BsgI	GTGCAG	1 cut(s)	258
BshFI	GGCC	4 cut(s)	5, 306, 457, 680
BsiHKAI	GWGCWC	2 cut(s)	149, 436
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	2 cut(s)	227, 240
BsmFI	GGGAC	1 cut(s)	473
BsnI	GGCC	4 cut(s)	5, 306, 457, 680
Bsp119I	TTCGAA	1 cut(s)	349
Bsp1286I	GDGCHC	2 cut(s)	149, 436
Bsp143I	GATC	1 cut(s)	709
Bsp1720I	GCTNAGC	1 cut(s)	159
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	1 cut(s)	387
BspANI	GGCC	4 cut(s)	5, 306, 457, 680
BspCNI	CTCAG	3 cut(s)	51, 160, 544
BspLI	GGNNCC	1 cut(s)	232
BspT104I	TTCGAA	1 cut(s)	349
BsrI	ACTGG	3 cut(s)	550, 673, 684
BssECI	CCNNGG	3 cut(s)	114, 133, 153
BssMI	GATC	1 cut(s)	709
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	2 cut(s)	115, 319
Bst6I	CTCTTC	1 cut(s)	669
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstBI	TTCGAA	1 cut(s)	349
BstC8I	GCNNGC	5 cut(s)	17, 21, 165, 384, 474
BstDEI	CTNAG	6 cut(s)	59, 159, 168, 253, 390, 552
BstDSI	CCRYGG	2 cut(s)	114, 153
BstF5I	GGATG	2 cut(s)	426, 607
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	1 cut(s)	712
BstMBI	GATC	1 cut(s)	709
BstMWI	GCNNNNNNNGC	7 cut(s)	64, 164, 263, 312, 368, 527, 704
BstNI	CCWGG	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	133
BstSFI	CTRYAG	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	65, 115
BstX2I	RGATCY	1 cut(s)	709
BstYI	RGATCY	1 cut(s)	709
BsuRI	GGCC	4 cut(s)	5, 306, 457, 680
BtgI	CCRYGG	2 cut(s)	114, 153
BtsCI	GGATG	2 cut(s)	426, 607
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	5 cut(s)	17, 21, 165, 384, 474
CfoI	GCGC	1 cut(s)	58
Cfr13I	GGNCC	3 cut(s)	4, 401, 455
Csp6I	GTAC	2 cut(s)	172, 374
CviAII	CATG	1 cut(s)	154
CviQI	GTAC	2 cut(s)	172, 374
DdeI	CTNAG	6 cut(s)	59, 159, 168, 253, 390, 552
DpnI	GATC	1 cut(s)	711
DpnII	GATC	1 cut(s)	709
Eam1104I	CTCTTC	1 cut(s)	669
EarI	CTCTTC	1 cut(s)	669
Eco130I	CCWWGG	1 cut(s)	153
Eco147I	AGGCCT	2 cut(s)	306, 680
Eco47I	GGWCC	1 cut(s)	401
Eco47III	AGCGCT	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	1 cut(s)	157
FaiI	YATR	4 cut(s)	50, 155, 639, 749
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	1 cut(s)	153
Fnu4HI	GCNGC	3 cut(s)	54, 104, 387
FokI	GGATG	2 cut(s)	413, 594
Fsp4HI	GCNGC	3 cut(s)	54, 104, 387
FspBI	CTAG	1 cut(s)	308
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	3 cut(s)	54, 104, 387
GsuI	CTGGAG	3 cut(s)	156, 667, 690
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	4 cut(s)	5, 306, 457, 680
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	1 cut(s)	157
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HindIII	AAGCTT	1 cut(s)	352
HinfI	GANTC	4 cut(s)	346, 509, 586, 715
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	3 cut(s)	345, 553, 714
Hpy188III	TCNNGA	4 cut(s)	404, 611, 649, 719
Hpy8I	GTNNAC	1 cut(s)	322
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	3 cut(s)	57, 389, 613
HpyCH4III	ACNGT	2 cut(s)	115, 319
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	3 cut(s)	239, 315, 371
HpyF10VI	GCNNNNNNNGC	7 cut(s)	64, 164, 263, 312, 368, 527, 704
HpyF3I	CTNAG	6 cut(s)	59, 159, 168, 253, 390, 552
HpySE526I	ACGT	1 cut(s)	450
Hsp92II	CATG	1 cut(s)	157
HspAI	GCGC	1 cut(s)	56
Kzo9I	GATC	1 cut(s)	709
LmnI	GCTCC	2 cut(s)	439, 704
Lsp1109I	GCAGC	2 cut(s)	65, 115
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	1 cut(s)	641
MalI	GATC	1 cut(s)	711
MboI	GATC	1 cut(s)	709
MboII	GAAGA	4 cut(s)	241, 568, 664, 686
MflI	RGATCY	1 cut(s)	709
MhlI	GDGCHC	2 cut(s)	149, 436
MluCI	AATT	1 cut(s)	514
MmeI	TCCRAC	2 cut(s)	486, 682
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	1 cut(s)	465
MslI	CAYNNNNRTG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	7 cut(s)	64, 164, 263, 312, 368, 527, 704
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	1 cut(s)	709
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	1 cut(s)	232
NspV	TTCGAA	1 cut(s)	349
PceI	AGGCCT	2 cut(s)	306, 680
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	4 cut(s)	346, 509, 586, 715
PkrI	GCNGC	3 cut(s)	55, 105, 388
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	3 cut(s)	4, 401, 455
PsrI	GAACNNNNNNTAC	2 cut(s)	357, 389
PsuI	RGATCY	1 cut(s)	709
RsaI	GTAC	2 cut(s)	173, 375
RsaNI	GTAC	2 cut(s)	172, 374
RseI	CAYNNNNRTG	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	3 cut(s)	54, 104, 387
Sau3AI	GATC	1 cut(s)	709
Sau96I	GGNCC	3 cut(s)	4, 401, 455
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	2 cut(s)	149, 436
SetI	ASST	9 cut(s)	108, 165, 236, 268, 356, 384, 400, 453, 744
SfcI	CTRYAG	1 cut(s)	267
SfuI	TTCGAA	1 cut(s)	349
SinI	GGWCC	1 cut(s)	401
SmiMI	CAYNNNNRTG	1 cut(s)	152
Sse9I	AATT	1 cut(s)	514
SseBI	AGGCCT	2 cut(s)	306, 680
SsiI	CCGC	1 cut(s)	387
SspMI	CTAG	1 cut(s)	308
StuI	AGGCCT	2 cut(s)	306, 680
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	2 cut(s)	115, 319
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	2 cut(s)	349, 631
TasI	AATT	1 cut(s)	514
TauI	GCSGC	1 cut(s)	389
TfiI	GAWTC	4 cut(s)	346, 509, 586, 715
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	1 cut(s)	322
TseI	GCWGC	2 cut(s)	53, 103
TspDTI	ATGAA	1 cut(s)	415
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	401
XapI	RAATTY	1 cut(s)	514
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.