Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010999

Physical Location & Seq

Genomic Coordinates Forward (+)

64888535 .. 64891652

Gene Structure 3118 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035317

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCCCTCGTCGGCGTGCTTGCTTTACAGGGCTCTTACAACGAACACATAGCAGTGCTGAGAAGGCTGGGAGTGAAGGGCGTGGAGATAAAGAAACCAGAGCAGCTCGAAACCGTGGCCTCACTCATAATCCCTGGAGGAGAGAGCACCACGATGGCTAAGCTCGCCGAGTACCACAACCTGTTTCCTGCTTTGCGTGAGTTTGTTAAGATGGGGAAACCTGTTTGGGGAACCTGTGCTGGACTTATATTCTTAGCAAACAGAGCTACAGGACAGAAAATAGGAGGACAGGAACTTGTTGGAGGCCTAGATTGCATGGTTCACAGAAATTTCTTTGGCAGTCAGCTTCAGAGTTTTGAGACAGAACTTTCAGTACCAGAGCTTGCTTCGAAGGAAGGTGGTCCAGAAGTATTTCGTGGAGTTTTCATCCGTGCTCCTGCAATCCTTGAGGTAGGACCACAAGTTGAAGTCCTGGCTGATTATCCTGTCCCAGCTAATAAGTGGAAGGATTCAAATCCTGGTGTTGAAGGCCATGAGGAAAATTCTGGGTCTGAGAAGAAAGTGATTGTAGCAGTTAGACAAGGGAATTTGCTAGCGACTGCCTTCCACCCTGAACTGACAGCAGATACTCGATGGCATAGTTACTTCTTGAAGATGGCAACTGAAACCGAAGGAGCCTCAAGTAGCATTGTTGCTGTTGGTGCAGATCTAGATTTAAACCAACCAAGAAAGATTGACCTCCCAGTATTTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004359 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008614 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0032991 GO:0034641 GO:0042364 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0046982 GO:0046983 GO:0051186 GO:0051188 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1903600

KEGG Pathways

Metabolic & Signaling

ko00750 map00750

Pfam Domains

Protein Families

SNO

Protein Analysis

252

Amino Acids

27.15

Weight (kDa)

5.74

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNO	PF01174	6 - 220	2.3e-50	SNO glutamine amidotransferase family
GATase_3	PF07685	16 - 105	3.6e-08	CobB/CobQ-like glutamine amidotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60540
fragaria_vesca	FvH4_3g32570 FvH4_3g32570 FvH4_3g32570 FvH4_3g32570 FvH4_3g32570 FvH4_3g32570
malus_domestica	MD03G1113000.v1.1 MD11G1133800.v1.1
prunus_persica	Prupe.6G100100_v2.0.a1
pyrus_communis	pycom11g11030
rosa_chinensis	RchiOBHm_Chr5g0059641
rosa_laevigata	RLG00000035317
rosa_multiflora	Rmu_sc0001146.1_g000002
rosa_roxburghii	Rroxscaffold_1G00020970
rosa_rugosa	Rorug05G0323800
rosa_samantha	Rh5AG389100 Rh5BG400800 Rh5DG417200
rosa_wichuraiana	Rw5G036630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	328, 541, 586
AcuI	CTGAAG	1 cut(s)	332
AfaI	GTAC	2 cut(s)	173, 375
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	4 cut(s)	467, 513, 527, 652
AjnI	CCWGG	3 cut(s)	133, 471, 517
AluBI	AGCT	6 cut(s)	106, 163, 266, 346, 382, 494
AluI	AGCT	6 cut(s)	106, 163, 266, 346, 382, 494
Alw21I	GWGCWC	2 cut(s)	149, 436
Alw26I	GTCTC	1 cut(s)	353
AoxI	GGCC	4 cut(s)	3, 117, 304, 529
ApeKI	GCWGC	1 cut(s)	103
ApoI	RAATTY	3 cut(s)	328, 541, 586
Asp700I	GAANNNNTTC	1 cut(s)	411
AspS9I	GGNCC	3 cut(s)	4, 401, 455
AsuII	TTCGAA	1 cut(s)	389
AsuNHI	GCTAGC	1 cut(s)	592
AvaII	GGWCC	2 cut(s)	401, 455
BanII	GRGCYC	1 cut(s)	35
Bbv12I	GWGCWC	2 cut(s)	149, 436
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	4 cut(s)	148, 205, 627, 649
BciT130I	CCWGG	3 cut(s)	135, 473, 519
BcoDI	GTCTC	1 cut(s)	353
BfaI	CTAG	3 cut(s)	308, 593, 710
BfmI	CTRYAG	1 cut(s)	267
BglII	AGATCT	1 cut(s)	706
BisI	GCNGC	1 cut(s)	104
BlpI	GCTNAGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	105
Bme1390I	CCNGG	3 cut(s)	135, 473, 519
Bme18I	GGWCC	2 cut(s)	401, 455
BmgT120I	GGNCC	3 cut(s)	4, 401, 455
BmiI	GGNNCC	2 cut(s)	232, 676
BmrFI	CCNGG	3 cut(s)	135, 473, 519
BmrI	ACTGGG	1 cut(s)	737
BmtI	GCTAGC	1 cut(s)	596
BmuI	ACTGGG	1 cut(s)	737
BpmI	CTGGAG	1 cut(s)	156
Bpu1102I	GCTNAGC	1 cut(s)	159
Bpu14I	TTCGAA	1 cut(s)	389
BpuEI	CTTGAG	2 cut(s)	467, 664
BsaBI	GATNNNNATC	1 cut(s)	513
BsaJI	CCNNGG	2 cut(s)	114, 133
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	743
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	3 cut(s)	135, 473, 519
BseDI	CCNNGG	2 cut(s)	114, 133
BseGI	GGATG	1 cut(s)	426
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMII	CTCAG	2 cut(s)	50, 543
BseNI	ACTGG	1 cut(s)	743
BseRI	GAGGAG	1 cut(s)	153
BseXI	GCAGC	1 cut(s)	115
BseYI	CCCAGC	2 cut(s)	67, 490
BsgI	GTGCAG	1 cut(s)	723
BshFI	GGCC	4 cut(s)	5, 119, 306, 531
BsiHKAI	GWGCWC	2 cut(s)	149, 436
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	1 cut(s)	353
BsmFI	GGGAC	1 cut(s)	473
BsnI	GGCC	4 cut(s)	5, 119, 306, 531
Bsp119I	TTCGAA	1 cut(s)	389
Bsp1286I	GDGCHC	3 cut(s)	35, 149, 436
Bsp143I	GATC	1 cut(s)	706
Bsp1720I	GCTNAGC	1 cut(s)	159
BspANI	GGCC	4 cut(s)	5, 119, 306, 531
BspCNI	CTCAG	2 cut(s)	51, 544
BspLI	GGNNCC	2 cut(s)	232, 676
BspOI	GCTAGC	1 cut(s)	596
BspT104I	TTCGAA	1 cut(s)	389
BsrI	ACTGG	1 cut(s)	743
BssECI	CCNNGG	2 cut(s)	114, 133
BssMI	GATC	1 cut(s)	706
Bst2UI	CCWGG	3 cut(s)	135, 473, 519
Bst4CI	ACNGT	1 cut(s)	115
BstBI	TTCGAA	1 cut(s)	389
BstC8I	GCNNGC	5 cut(s)	17, 21, 165, 384, 594
BstDEI	CTNAG	4 cut(s)	59, 159, 253, 552
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	426
BstKTI	GATC	1 cut(s)	709
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	1 cut(s)	706
BstMWI	GCNNNNNNNGC	5 cut(s)	64, 164, 263, 312, 701
BstNI	CCWGG	3 cut(s)	135, 473, 519
BstSCI	CCNGG	3 cut(s)	133, 471, 517
BstSFI	CTRYAG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	115
BstX2I	RGATCY	1 cut(s)	706
BstYI	RGATCY	1 cut(s)	706
BsuRI	GGCC	4 cut(s)	5, 119, 306, 531
BtgI	CCRYGG	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	426
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	5 cut(s)	17, 21, 165, 384, 594
Cfr13I	GGNCC	3 cut(s)	4, 401, 455
Csp6I	GTAC	2 cut(s)	172, 374
CviAII	CATG	2 cut(s)	316, 533
CviQI	GTAC	2 cut(s)	172, 374
DdeI	CTNAG	4 cut(s)	59, 159, 253, 552
DpnI	GATC	1 cut(s)	708
DpnII	GATC	1 cut(s)	706
DraI	TTTAAA	1 cut(s)	717
Eco147I	AGGCCT	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	35
Eco47I	GGWCC	2 cut(s)	401, 455
Eco57I	CTGAAG	1 cut(s)	332
EcoRII	CCWGG	3 cut(s)	133, 471, 517
EcoT38I	GRGCYC	1 cut(s)	35
FaeI	CATG	2 cut(s)	319, 536
FaiI	YATR	7 cut(s)	50, 128, 248, 317, 534, 639, 754
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	2 cut(s)	315, 532
Fnu4HI	GCNGC	1 cut(s)	104
FokI	GGATG	1 cut(s)	413
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	1 cut(s)	104
FspBI	CTAG	3 cut(s)	308, 593, 710
GluI	GCNGC	1 cut(s)	104
GsaI	CCCAGC	2 cut(s)	71, 494
GsuI	CTGGAG	1 cut(s)	156
HaeIII	GGCC	4 cut(s)	5, 119, 306, 531
Hin1II	CATG	2 cut(s)	319, 536
HinfI	GANTC	1 cut(s)	509
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	2 cut(s)	351, 553
Hpy188III	TCNNGA	3 cut(s)	404, 649, 710
Hpy8I	GTNNAC	1 cut(s)	322
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	8 cut(s)	57, 70, 385, 389, 499, 521, 613, 665
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	3 cut(s)	315, 440, 704
HpyF10VI	GCNNNNNNNGC	5 cut(s)	64, 164, 263, 312, 701
HpyF3I	CTNAG	4 cut(s)	59, 159, 253, 552
Hsp92II	CATG	2 cut(s)	319, 536
Kzo9I	GATC	1 cut(s)	706
LmnI	GCTCC	2 cut(s)	439, 674
Lsp1109I	GCAGC	1 cut(s)	115
MaeI	CTAG	3 cut(s)	308, 593, 710
MaeIII	GTNAC	1 cut(s)	641
MalI	GATC	1 cut(s)	708
MboI	GATC	1 cut(s)	706
MboII	GAAGA	2 cut(s)	568, 664
MflI	RGATCY	1 cut(s)	706
MhlI	GDGCHC	3 cut(s)	35, 149, 436
MluCI	AATT	3 cut(s)	328, 541, 586
MmeI	TCCRAC	1 cut(s)	280
MnlI	CCTC	9 cut(s)	17, 130, 131, 278, 296, 442, 529, 688, 749
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	2 cut(s)	207, 716
MslI	CAYNNNNRTG	2 cut(s)	53, 152
MspR9I	CCNGG	3 cut(s)	135, 473, 519
MvaI	CCWGG	3 cut(s)	135, 473, 519
MwoI	GCNNNNNNNGC	5 cut(s)	64, 164, 263, 312, 701
NdeII	GATC	1 cut(s)	706
NheI	GCTAGC	1 cut(s)	592
NlaIII	CATG	2 cut(s)	319, 536
NlaIV	GGNNCC	2 cut(s)	232, 676
NmeAIII	GCCGAG	1 cut(s)	193
NspV	TTCGAA	1 cut(s)	389
PceI	AGGCCT	1 cut(s)	306
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	509
PkrI	GCNGC	1 cut(s)	105
Psp6I	CCWGG	3 cut(s)	133, 471, 517
PspFI	CCCAGC	2 cut(s)	67, 490
PspGI	CCWGG	3 cut(s)	133, 471, 517
PspN4I	GGNNCC	2 cut(s)	232, 676
PspPI	GGNCC	3 cut(s)	4, 401, 455
PsrI	GAACNNNNNNTAC	2 cut(s)	357, 389
PsuI	RGATCY	1 cut(s)	706
RsaI	GTAC	2 cut(s)	173, 375
RsaNI	GTAC	2 cut(s)	172, 374
RseI	CAYNNNNRTG	2 cut(s)	53, 152
SaqAI	TTAA	2 cut(s)	207, 716
SatI	GCNGC	1 cut(s)	104
Sau3AI	GATC	1 cut(s)	706
Sau96I	GGNCC	3 cut(s)	4, 401, 455
ScrFI	CCNGG	3 cut(s)	135, 473, 519
SduI	GDGCHC	3 cut(s)	35, 149, 436
SfcI	CTRYAG	1 cut(s)	267
SfuI	TTCGAA	1 cut(s)	389
SinI	GGWCC	2 cut(s)	401, 455
SmiMI	CAYNNNNRTG	2 cut(s)	53, 152
SmlI	CTYRAG	2 cut(s)	446, 679
SmoI	CTYRAG	2 cut(s)	446, 679
Sse9I	AATT	3 cut(s)	328, 541, 586
SseBI	AGGCCT	1 cut(s)	306
SspMI	CTAG	3 cut(s)	308, 593, 710
StuI	AGGCCT	1 cut(s)	306
StyD4I	CCNGG	3 cut(s)	133, 471, 517
TaaI	ACNGT	1 cut(s)	115
TaqI	TCGA	3 cut(s)	108, 389, 631
TasI	AATT	3 cut(s)	328, 541, 586
TfiI	GAWTC	1 cut(s)	509
Tru1I	TTAA	2 cut(s)	207, 716
Tru9I	TTAA	2 cut(s)	207, 716
TscAI	CASTG	1 cut(s)	60
TseI	GCWGC	1 cut(s)	103
TspDTI	ATGAA	1 cut(s)	415
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	1 cut(s)	60
VpaK11BI	GGWCC	2 cut(s)	401, 455
XapI	RAATTY	3 cut(s)	328, 541, 586
XbaI	TCTAGA	1 cut(s)	709
XcmI	CCANNNNNNNNNTGG	1 cut(s)	498
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	3 cut(s)	308, 593, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.