Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010999

Physical Location & Seq

Genomic Coordinates Forward (+)

64702000 .. 64705627

Gene Structure 3628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33624

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCCCTCGTCGGCGTGCTTGCTTTACAGGGCTCTTACAACGAACACATAGCAGGCATGCCTTTCTCATCTCTCTCTGACCACATATATGTCTTTTGGGTTTTGCTGCTGGGAGTGAAGGGCGTGGAGATAAAGAAACCAGAGCAGCTCGAAAACGTGGCCTCACTCATAATCCCTGGAGGAGAGAGCACCACCATGGCAAAGCTCGCCGAGTACCACAACCTGTTTCCTGCTTTGCGTGAGTTTGTTAAGATGGGGAAGCCTGTTTGGGGAACCTGTGCTGGACTTATATTCTTAGCAGACAGAGCTACAGGACAGAAAATAGGAGGACAGGAACTTGTTGGAGGCCTAGATTGCATGGTTCACAGAAATTTCTTTGGCAGTCAGCTTCAGAGTTTTGAGACAGAACTTTCAGTACCAGAGCTTGCTTCGAAGGAAGGTGGTCCTGAAGTATTTCGTGGAGTTTTCATCCGTGCTCCTGCAATCCTTGAGGTAGGACCACAAGTTGAAGTCCTGGCTGATTATCCTGTCCCAGCTAATAAGTGGAAGGATTCAAATCCTGGTGTTGAAGGCCATGAGGAAAATTCTGGGTCTGAGAAGAAAGTGATTGTAGCAGTTAGACAAGGGAATTTGCTAGCGACTGCCTTCCACCCTGAACTGACAGCAGATACTCGATGGCATAGTTACTTCTTGAAGATGGCAACTGAAACTGAAGGAGCCTCAAGTAGCGTTGTTGCTGTTGGTGCAGATCTAGATTTAAACCAACCAACAAAGATTGACCTCCCAGTATTTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004359 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008614 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0032991 GO:0034641 GO:0042364 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0046982 GO:0046983 GO:0051186 GO:0051188 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1903600

KEGG Pathways

Metabolic & Signaling

ko00750 map00750

Pfam Domains

Protein Families

SNO

Protein Analysis

265

Amino Acids

28.66

Weight (kDa)

5.19

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNO	PF01174	6 - 234	3.8e-46	SNO glutamine amidotransferase family
GATase_3	PF07685	44 - 119	2.9e-07	CobB/CobQ-like glutamine amidotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0010999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60540
fragaria_vesca	FvH4_3g32570 FvH4_3g32570 FvH4_3g32570 FvH4_3g32570 FvH4_3g32570 FvH4_3g32570
malus_domestica	MD03G1113000.v1.1 MD11G1133800.v1.1
prunus_persica	Prupe.6G100100_v2.0.a1
pyrus_communis	pycom11g11030
rosa_chinensis	RchiOBHm_Chr5g0059641
rosa_laevigata	RLG00000035317
rosa_multiflora	Rmu_sc0001146.1_g000002
rosa_roxburghii	Rroxscaffold_1G00020970
rosa_rugosa	Rorug05G0323800
rosa_samantha	Rh5AG389100 Rh5BG400800 Rh5DG417200
rosa_wichuraiana	Rw5G036630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	370, 583, 628
AcuI	CTGAAG	3 cut(s)	374, 468, 732
AfaI	GTAC	2 cut(s)	215, 417
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgsI	TTSAA	4 cut(s)	509, 555, 569, 694
AjnI	CCWGG	3 cut(s)	175, 513, 559
AluBI	AGCT	6 cut(s)	148, 205, 308, 388, 424, 536
AluI	AGCT	6 cut(s)	148, 205, 308, 388, 424, 536
Alw21I	GWGCWC	2 cut(s)	191, 478
Alw26I	GTCTC	1 cut(s)	395
AoxI	GGCC	4 cut(s)	3, 159, 346, 571
ApeKI	GCWGC	2 cut(s)	106, 145
ApoI	RAATTY	3 cut(s)	370, 583, 628
Asp700I	GAANNNNTTC	1 cut(s)	453
AspS9I	GGNCC	3 cut(s)	4, 443, 497
AsuII	TTCGAA	1 cut(s)	431
AsuNHI	GCTAGC	1 cut(s)	634
AvaII	GGWCC	2 cut(s)	443, 497
BanII	GRGCYC	1 cut(s)	35
Bbv12I	GWGCWC	2 cut(s)	191, 478
BbvI	GCAGC	2 cut(s)	93, 157
BccI	CCATC	3 cut(s)	247, 669, 691
BciT130I	CCWGG	3 cut(s)	177, 515, 561
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	3 cut(s)	350, 635, 752
BfmI	CTRYAG	1 cut(s)	309
BglII	AGATCT	1 cut(s)	748
BisI	GCNGC	2 cut(s)	107, 146
BlsI	GCNGC	2 cut(s)	108, 147
Bme1390I	CCNGG	3 cut(s)	177, 515, 561
Bme18I	GGWCC	2 cut(s)	443, 497
BmgT120I	GGNCC	3 cut(s)	4, 443, 497
BmiI	GGNNCC	2 cut(s)	274, 718
BmrFI	CCNGG	3 cut(s)	177, 515, 561
BmrI	ACTGGG	1 cut(s)	779
BmtI	GCTAGC	1 cut(s)	638
BmuI	ACTGGG	1 cut(s)	779
BpmI	CTGGAG	1 cut(s)	198
Bpu14I	TTCGAA	1 cut(s)	431
BpuEI	CTTGAG	2 cut(s)	509, 706
BsaBI	GATNNNNATC	1 cut(s)	555
BsaJI	CCNNGG	2 cut(s)	175, 195
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	785
Bse8I	GATNNNNATC	1 cut(s)	555
BseBI	CCWGG	3 cut(s)	177, 515, 561
BseDI	CCNNGG	2 cut(s)	175, 195
BseGI	GGATG	1 cut(s)	468
BseJI	GATNNNNATC	1 cut(s)	555
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	1 cut(s)	785
BseRI	GAGGAG	1 cut(s)	195
BseXI	GCAGC	2 cut(s)	93, 157
BseYI	CCCAGC	2 cut(s)	109, 532
BsgI	GTGCAG	1 cut(s)	765
BshFI	GGCC	4 cut(s)	5, 161, 348, 573
BsiHKAI	GWGCWC	2 cut(s)	191, 478
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmAI	GTCTC	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	515
BsnI	GGCC	4 cut(s)	5, 161, 348, 573
Bsp119I	TTCGAA	1 cut(s)	431
Bsp1286I	GDGCHC	3 cut(s)	35, 191, 478
Bsp143I	GATC	1 cut(s)	748
Bsp19I	CCATGG	1 cut(s)	195
BspANI	GGCC	4 cut(s)	5, 161, 348, 573
BspCNI	CTCAG	1 cut(s)	586
BspLI	GGNNCC	2 cut(s)	274, 718
BspOI	GCTAGC	1 cut(s)	638
BspT104I	TTCGAA	1 cut(s)	431
BsrI	ACTGG	1 cut(s)	785
BssECI	CCNNGG	2 cut(s)	175, 195
BssMI	GATC	1 cut(s)	748
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	3 cut(s)	177, 515, 561
BstBI	TTCGAA	1 cut(s)	431
BstC8I	GCNNGC	7 cut(s)	17, 21, 55, 59, 207, 426, 636
BstDEI	CTNAG	2 cut(s)	295, 594
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	468
BstKTI	GATC	1 cut(s)	751
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	1 cut(s)	748
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 305, 354, 743
BstNI	CCWGG	3 cut(s)	177, 515, 561
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	3 cut(s)	175, 513, 559
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	2 cut(s)	93, 157
BstX2I	RGATCY	1 cut(s)	748
BstYI	RGATCY	1 cut(s)	748
BsuRI	GGCC	4 cut(s)	5, 161, 348, 573
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	468
Cac8I	GCNNGC	7 cut(s)	17, 21, 55, 59, 207, 426, 636
Cfr13I	GGNCC	3 cut(s)	4, 443, 497
Csp6I	GTAC	2 cut(s)	214, 416
CviAII	CATG	4 cut(s)	58, 196, 358, 575
CviQI	GTAC	2 cut(s)	214, 416
DdeI	CTNAG	2 cut(s)	295, 594
DpnI	GATC	1 cut(s)	750
DpnII	GATC	1 cut(s)	748
DraI	TTTAAA	1 cut(s)	759
Eco130I	CCWWGG	1 cut(s)	195
Eco147I	AGGCCT	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	35
Eco47I	GGWCC	2 cut(s)	443, 497
Eco57I	CTGAAG	3 cut(s)	374, 468, 732
EcoRII	CCWGG	3 cut(s)	175, 513, 559
EcoT14I	CCWWGG	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	4 cut(s)	61, 199, 361, 578
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	4 cut(s)	57, 195, 357, 574
Fnu4HI	GCNGC	2 cut(s)	107, 146
FokI	GGATG	1 cut(s)	455
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	2 cut(s)	107, 146
FspBI	CTAG	3 cut(s)	350, 635, 752
GluI	GCNGC	2 cut(s)	107, 146
GsaI	CCCAGC	2 cut(s)	113, 536
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	4 cut(s)	5, 161, 348, 573
Hin1II	CATG	4 cut(s)	61, 199, 361, 578
HinfI	GANTC	1 cut(s)	551
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	3 cut(s)	79, 393, 595
Hpy188III	TCNNGA	3 cut(s)	446, 691, 752
Hpy8I	GTNNAC	1 cut(s)	364
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	7 cut(s)	112, 427, 431, 541, 563, 655, 707
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	3 cut(s)	357, 482, 746
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 305, 354, 743
HpyF3I	CTNAG	2 cut(s)	295, 594
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	4 cut(s)	61, 199, 361, 578
Kzo9I	GATC	1 cut(s)	748
LmnI	GCTCC	2 cut(s)	481, 716
Lsp1109I	GCAGC	2 cut(s)	93, 157
MaeI	CTAG	3 cut(s)	350, 635, 752
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	683
MalI	GATC	1 cut(s)	750
MboI	GATC	1 cut(s)	748
MboII	GAAGA	2 cut(s)	610, 706
MflI	RGATCY	1 cut(s)	748
MhlI	GDGCHC	3 cut(s)	35, 191, 478
MluCI	AATT	3 cut(s)	370, 583, 628
MmeI	TCCRAC	1 cut(s)	322
MnlI	CCTC	9 cut(s)	17, 172, 173, 320, 338, 484, 571, 730, 791
MroXI	GAANNNNTTC	1 cut(s)	453
MseI	TTAA	2 cut(s)	249, 758
MslI	CAYNNNNRTG	2 cut(s)	87, 194
MspR9I	CCNGG	3 cut(s)	177, 515, 561
MvaI	CCWGG	3 cut(s)	177, 515, 561
MwoI	GCNNNNNNNGC	4 cut(s)	206, 305, 354, 743
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	1 cut(s)	748
NheI	GCTAGC	1 cut(s)	634
NlaIII	CATG	4 cut(s)	61, 199, 361, 578
NlaIV	GGNNCC	2 cut(s)	274, 718
NmeAIII	GCCGAG	1 cut(s)	235
NspI	RCATGY	1 cut(s)	61
NspV	TTCGAA	1 cut(s)	431
PaeI	GCATGC	1 cut(s)	61
PceI	AGGCCT	1 cut(s)	348
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	1 cut(s)	551
PkrI	GCNGC	2 cut(s)	108, 147
Psp6I	CCWGG	3 cut(s)	175, 513, 559
PspFI	CCCAGC	2 cut(s)	109, 532
PspGI	CCWGG	3 cut(s)	175, 513, 559
PspN4I	GGNNCC	2 cut(s)	274, 718
PspPI	GGNCC	3 cut(s)	4, 443, 497
PsrI	GAACNNNNNNTAC	2 cut(s)	399, 431
PsuI	RGATCY	1 cut(s)	748
RsaI	GTAC	2 cut(s)	215, 417
RsaNI	GTAC	2 cut(s)	214, 416
RseI	CAYNNNNRTG	2 cut(s)	87, 194
SaqAI	TTAA	2 cut(s)	249, 758
SatI	GCNGC	2 cut(s)	107, 146
Sau3AI	GATC	1 cut(s)	748
Sau96I	GGNCC	3 cut(s)	4, 443, 497
ScrFI	CCNGG	3 cut(s)	177, 515, 561
SduI	GDGCHC	3 cut(s)	35, 191, 478
SfcI	CTRYAG	1 cut(s)	309
SfuI	TTCGAA	1 cut(s)	431
SinI	GGWCC	2 cut(s)	443, 497
SmiMI	CAYNNNNRTG	2 cut(s)	87, 194
SmlI	CTYRAG	2 cut(s)	488, 721
SmoI	CTYRAG	2 cut(s)	488, 721
SphI	GCATGC	1 cut(s)	61
Sse9I	AATT	3 cut(s)	370, 583, 628
SseBI	AGGCCT	1 cut(s)	348
SspMI	CTAG	3 cut(s)	350, 635, 752
StuI	AGGCCT	1 cut(s)	348
StyD4I	CCNGG	3 cut(s)	175, 513, 559
StyI	CCWWGG	1 cut(s)	195
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	3 cut(s)	150, 431, 673
TasI	AATT	3 cut(s)	370, 583, 628
TfiI	GAWTC	1 cut(s)	551
Tru1I	TTAA	2 cut(s)	249, 758
Tru9I	TTAA	2 cut(s)	249, 758
TseI	GCWGC	2 cut(s)	106, 145
TspDTI	ATGAA	1 cut(s)	457
TspGWI	ACGGA	1 cut(s)	461
VpaK11BI	GGWCC	2 cut(s)	443, 497
XapI	RAATTY	3 cut(s)	370, 583, 628
XbaI	TCTAGA	1 cut(s)	751
XceI	RCATGY	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	1 cut(s)	540
XmnI	GAANNNNTTC	1 cut(s)	453
XspI	CTAG	3 cut(s)	350, 635, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.