Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010999

Physical Location & Seq

Genomic Coordinates Forward (+)

65061858 .. 65065895

Gene Structure 4038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG400800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCAAAGCTCGCCGAGTACCACAACCTGTTTCCTGCTTTGCGTGAGTTTGTTAAGATGGGGAAGCCTGTTTGGGGAACCTGTGCTGGACTTATATTCTTAGCAGACAGAGCTACAGGACAGAAAATAGGAGGACAGGAACTTGTTGGAGGCCTAGATTGCATGGTTCACAGAAATTTCTTTGGCAGTCAGCTTCAGAGTTTTGAGACAGAACTTTCAGTACCAGAGCTTGCTTCGAAGGAAGGTGGTCCTGAAGTATTTCGTGGAGTTTTCATCCGTGCTCCTGCAATCCTTGAGGTAGGACCACAAGTTGAAGTCCTGGCTGATTATCCTGTCCCAGCTAATAAGTGGAAGGATTCAAATCCTGGTGTTGAAGGCCATGAGGTTTGTGATTGTTCTGCTAACATAGTTCAATATAATCATTCTGTAGTCAAGGCCTTATTGGTTTCAATTAGGTTTGGAGTATTACTGTATTCTTGTTATTTGCTTTTTTTCAGAGAACATTTTTCCTTTTCAGATTATCAAATTTTGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004359 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008614 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0032991 GO:0034641 GO:0042364 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0046982 GO:0046983 GO:0051186 GO:0051188 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1903600

KEGG Pathways

Metabolic & Signaling

ko00750 map00750

Pfam Domains

Protein Families

SNO

Protein Analysis

178

Amino Acids

19.76

Weight (kDa)

5.71

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNO	PF01174	1 - 109	5.2e-22	SNO glutamine amidotransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60540
fragaria_vesca	FvH4_3g32570 FvH4_3g32570 FvH4_3g32570 FvH4_3g32570 FvH4_3g32570 FvH4_3g32570
malus_domestica	MD03G1113000.v1.1 MD11G1133800.v1.1
prunus_persica	Prupe.6G100100_v2.0.a1
pyrus_communis	pycom11g11030
rosa_chinensis	RchiOBHm_Chr5g0059641
rosa_laevigata	RLG00000035317
rosa_multiflora	Rmu_sc0001146.1_g000002
rosa_roxburghii	Rroxscaffold_1G00020970
rosa_rugosa	Rorug05G0323800
rosa_samantha	Rh5AG389100 Rh5BG400800 Rh5DG417200
rosa_wichuraiana	Rw5G036630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	175, 525
AcuI	CTGAAG	2 cut(s)	179, 273
AfaI	GTAC	2 cut(s)	20, 222
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	5 cut(s)	314, 360, 374, 413, 450
AjnI	CCWGG	2 cut(s)	318, 364
AluBI	AGCT	5 cut(s)	10, 113, 193, 229, 341
AluI	AGCT	5 cut(s)	10, 113, 193, 229, 341
Alw21I	GWGCWC	1 cut(s)	283
Alw26I	GTCTC	1 cut(s)	200
AoxI	GGCC	3 cut(s)	151, 376, 435
ApoI	RAATTY	2 cut(s)	175, 525
Asp700I	GAANNNNTTC	1 cut(s)	258
AspS9I	GGNCC	2 cut(s)	248, 302
AsuII	TTCGAA	1 cut(s)	236
AvaII	GGWCC	2 cut(s)	248, 302
Bbv12I	GWGCWC	1 cut(s)	283
BccI	CCATC	1 cut(s)	52
BciT130I	CCWGG	2 cut(s)	320, 366
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	155
BfmI	CTRYAG	2 cut(s)	114, 426
Bme1390I	CCNGG	2 cut(s)	320, 366
Bme18I	GGWCC	2 cut(s)	248, 302
BmgT120I	GGNCC	2 cut(s)	248, 302
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	2 cut(s)	320, 366
Bpu14I	TTCGAA	1 cut(s)	236
BpuEI	CTTGAG	1 cut(s)	314
BsaBI	GATNNNNATC	1 cut(s)	360
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse8I	GATNNNNATC	1 cut(s)	360
BseBI	CCWGG	2 cut(s)	320, 366
BseGI	GGATG	1 cut(s)	273
BseJI	GATNNNNATC	1 cut(s)	360
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseYI	CCCAGC	1 cut(s)	337
BshFI	GGCC	3 cut(s)	153, 378, 437
BsiHKAI	GWGCWC	1 cut(s)	283
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	3 cut(s)	153, 378, 437
Bsp119I	TTCGAA	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	283
BspANI	GGCC	3 cut(s)	153, 378, 437
BspLI	GGNNCC	1 cut(s)	79
BspT104I	TTCGAA	1 cut(s)	236
Bst2UI	CCWGG	2 cut(s)	320, 366
Bst4CI	ACNGT	1 cut(s)	471
BstBI	TTCGAA	1 cut(s)	236
BstC8I	GCNNGC	2 cut(s)	12, 231
BstDEI	CTNAG	1 cut(s)	100
BstF5I	GGATG	1 cut(s)	273
BstMAI	GTCTC	1 cut(s)	200
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 110, 159
BstNI	CCWGG	2 cut(s)	320, 366
BstSCI	CCNGG	2 cut(s)	318, 364
BstSFI	CTRYAG	2 cut(s)	114, 426
BsuRI	GGCC	3 cut(s)	153, 378, 437
BtsCI	GGATG	1 cut(s)	273
Cac8I	GCNNGC	2 cut(s)	12, 231
Cfr13I	GGNCC	2 cut(s)	248, 302
Csp6I	GTAC	2 cut(s)	19, 221
CviAII	CATG	2 cut(s)	163, 380
CviQI	GTAC	2 cut(s)	19, 221
DdeI	CTNAG	1 cut(s)	100
Eco147I	AGGCCT	2 cut(s)	153, 437
Eco47I	GGWCC	2 cut(s)	248, 302
Eco57I	CTGAAG	2 cut(s)	179, 273
EcoRII	CCWGG	2 cut(s)	318, 364
FaeI	CATG	2 cut(s)	166, 383
FaiI	YATR	6 cut(s)	95, 164, 381, 407, 417, 535
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	2 cut(s)	162, 379
FokI	GGATG	1 cut(s)	260
FspBI	CTAG	1 cut(s)	155
GsaI	CCCAGC	1 cut(s)	341
HaeIII	GGCC	3 cut(s)	153, 378, 437
Hin1II	CATG	2 cut(s)	166, 383
HinfI	GANTC	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	3 cut(s)	198, 497, 517
Hpy188III	TCNNGA	1 cut(s)	251
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	4 cut(s)	232, 236, 346, 368
HpyCH4III	ACNGT	1 cut(s)	471
HpyCH4V	TGCA	2 cut(s)	162, 287
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 110, 159
HpyF3I	CTNAG	1 cut(s)	100
Hsp92II	CATG	2 cut(s)	166, 383
LmnI	GCTCC	1 cut(s)	286
MaeI	CTAG	1 cut(s)	155
MhlI	GDGCHC	1 cut(s)	283
MluCI	AATT	3 cut(s)	175, 450, 525
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	4 cut(s)	125, 143, 289, 376
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	1 cut(s)	54
MspR9I	CCNGG	2 cut(s)	320, 366
MvaI	CCWGG	2 cut(s)	320, 366
MwoI	GCNNNNNNNGC	3 cut(s)	11, 110, 159
NlaIII	CATG	2 cut(s)	166, 383
NlaIV	GGNNCC	1 cut(s)	79
NmeAIII	GCCGAG	1 cut(s)	40
NspV	TTCGAA	1 cut(s)	236
PceI	AGGCCT	2 cut(s)	153, 437
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	356
Psp6I	CCWGG	2 cut(s)	318, 364
PspFI	CCCAGC	1 cut(s)	337
PspGI	CCWGG	2 cut(s)	318, 364
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	2 cut(s)	248, 302
PsrI	GAACNNNNNNTAC	2 cut(s)	204, 236
RsaI	GTAC	2 cut(s)	20, 222
RsaNI	GTAC	2 cut(s)	19, 221
SaqAI	TTAA	1 cut(s)	54
Sau96I	GGNCC	2 cut(s)	248, 302
ScrFI	CCNGG	2 cut(s)	320, 366
SduI	GDGCHC	1 cut(s)	283
SfcI	CTRYAG	2 cut(s)	114, 426
SfuI	TTCGAA	1 cut(s)	236
SinI	GGWCC	2 cut(s)	248, 302
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	3 cut(s)	175, 450, 525
SseBI	AGGCCT	2 cut(s)	153, 437
SspMI	CTAG	1 cut(s)	155
StuI	AGGCCT	2 cut(s)	153, 437
StyD4I	CCNGG	2 cut(s)	318, 364
TaaI	ACNGT	1 cut(s)	471
TaqI	TCGA	1 cut(s)	236
TasI	AATT	3 cut(s)	175, 450, 525
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TspDTI	ATGAA	1 cut(s)	262
TspGWI	ACGGA	1 cut(s)	266
VpaK11BI	GGWCC	2 cut(s)	248, 302
XapI	RAATTY	2 cut(s)	175, 525
XcmI	CCANNNNNNNNNTGG	1 cut(s)	345
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.