Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010999

Physical Location & Seq

Genomic Coordinates Reverse (-)

12261563 .. 12265099

Gene Structure 3537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1133800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGCCCTCGTCGGCGTGCTTGCTCTTCAGGGGTCTTTCAACGAACACATAGCAGGCACTCCCTTTTTGCCGCCCGCCCCCTCTCTCGCAGCATATGCATTCGATATATCTCTGAGAAGGCTTGGGGTGAAGGGCGTAGAGATAAGGAAGCCGGAGCAGCTTGAATCTGTGGCCTCCCTTATAATCCCTGGAGGCGAGAGCACCACCATGGCTAAGCTCGCTGAGTACCACAACCTGTTTCCTGCTTTGCGCGAGTTTGTTAAAATGGGGAAGCCTGTTTGGGGGACCTGTGCAGGGCTTATTTTCTTAGCAAACAAAGCCACAGGACAGAAAATAGGAGGACAGGAACTTGTTGGCGGCCTAGATTGCACTGTTCACAGAAACTTCTTTGGCAGTCAGATTCAGAGCTTTGAGGCTGAACTTGCAGTACCAGAGCTTGCTTCTACAGAAGGTGGTCCTGAAGTATTTCGTGGGGTTTTCATCCGTGCTCCTGCTATCCTTGACGTAGGACCAGAAGTTGAAGTGCTGGCTGATTATCCTGTCCCGTCCAATAAGGTGTTGGATTCAAATTCCACAGTTGAAGCTCAAGAGGAGAATCCTGTGTCTGAGAATAAAGTGATTGTAGCAGTTCGACAAAAGAATTTGCTGGCGACTGCCTTCCATCCTGAATTGACAGCAGACACTCGATGGCATAGTTACTTCTTGAAGATGTCAACTGAAACCGGAGAAGGAGCCTCAAGTAGCATCGTTGCTGTTGGAGCAGATCTAAGTTCAGACCAACAAACAAAGATTGACCTCCCTATATTTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004359 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008614 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0032991 GO:0034641 GO:0042364 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0046982 GO:0046983 GO:0051186 GO:0051188 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1903600

KEGG Pathways

Metabolic & Signaling

ko00750 map00750

Pfam Domains

Protein Families

SNO

Protein Analysis

271

Amino Acids

28.91

Weight (kDa)

5.03

Isoelectric Point (pI)

52.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNO	PF01174	6 - 238	8.3e-45	SNO glutamine amidotransferase family
GATase_3	PF07685	38 - 125	5.3e-08	CobB/CobQ-like glutamine amidotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60540
fragaria_vesca	FvH4_3g32570 FvH4_3g32570 FvH4_3g32570 FvH4_3g32570 FvH4_3g32570 FvH4_3g32570
malus_domestica	MD03G1113000.v1.1 MD11G1133800.v1.1
prunus_persica	Prupe.6G100100_v2.0.a1
pyrus_communis	pycom11g11030
rosa_chinensis	RchiOBHm_Chr5g0059641
rosa_laevigata	RLG00000035317
rosa_multiflora	Rmu_sc0001146.1_g000002
rosa_roxburghii	Rroxscaffold_1G00020970
rosa_rugosa	Rorug05G0323800
rosa_samantha	Rh5AG389100 Rh5BG400800 Rh5DG417200
rosa_wichuraiana	Rw5G036630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	182
AccII	CGCG	1 cut(s)	252
AciI	CCGC	3 cut(s)	71, 75, 357
AcsI	RAATTY	2 cut(s)	568, 640
AcuI	CTGAAG	2 cut(s)	11, 480
AfaI	GTAC	2 cut(s)	227, 429
AfiI	CCNNNNNNNGG	2 cut(s)	281, 294
AgsI	TTSAA	7 cut(s)	40, 164, 521, 567, 581, 706, 809
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	5 cut(s)	160, 217, 408, 436, 584
AluI	AGCT	5 cut(s)	160, 217, 408, 436, 584
Alw21I	GWGCWC	2 cut(s)	203, 490
AoxI	GGCC	3 cut(s)	3, 171, 358
ApeKI	GCWGC	2 cut(s)	89, 157
ApoI	RAATTY	2 cut(s)	568, 640
Asp700I	GAANNNNTTC	1 cut(s)	465
AspLEI	GCGC	1 cut(s)	252
AspS9I	GGNCC	4 cut(s)	4, 285, 455, 509
AsuHPI	GGTGA	1 cut(s)	139
AvaII	GGWCC	3 cut(s)	285, 455, 509
Bbv12I	GWGCWC	2 cut(s)	203, 490
BbvI	GCAGC	2 cut(s)	101, 169
BccI	CCATC	2 cut(s)	669, 681
BciT130I	CCWGG	1 cut(s)	189
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	444
BglII	AGATCT	1 cut(s)	763
BisI	GCNGC	4 cut(s)	71, 90, 158, 358
BlpI	GCTNAGC	1 cut(s)	213
BlsI	GCNGC	4 cut(s)	72, 91, 159, 359
Bme1390I	CCNGG	1 cut(s)	189
Bme18I	GGWCC	3 cut(s)	285, 455, 509
BmgT120I	GGNCC	4 cut(s)	4, 285, 455, 509
BmiI	GGNNCC	2 cut(s)	286, 733
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	753
BpmI	CTGGAG	1 cut(s)	210
Bpu1102I	GCTNAGC	1 cut(s)	213
BpuEI	CTTGAG	2 cut(s)	570, 721
BsaJI	CCNNGG	2 cut(s)	187, 207
BsaWI	WCCGGW	1 cut(s)	722
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 294
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	187, 207
BseGI	GGATG	2 cut(s)	480, 661
BseLI	CCNNNNNNNGG	2 cut(s)	281, 294
BseMII	CTCAG	3 cut(s)	104, 213, 597
BseRI	GAGGAG	1 cut(s)	605
BseXI	GCAGC	2 cut(s)	101, 169
BsgI	GTGCAG	1 cut(s)	312
Bsh1236I	CGCG	1 cut(s)	252
BshFI	GGCC	3 cut(s)	5, 173, 360
BsiHKAI	GWGCWC	2 cut(s)	203, 490
BsiSI	CCGG	2 cut(s)	152, 723
BslFI	GGGAC	2 cut(s)	298, 527
BslI	CCNNNNNNNGG	2 cut(s)	281, 294
BsmFI	GGGAC	2 cut(s)	298, 527
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	3 cut(s)	5, 173, 360
Bsp1286I	GDGCHC	2 cut(s)	203, 490
Bsp143I	GATC	1 cut(s)	763
Bsp1720I	GCTNAGC	1 cut(s)	213
Bsp19I	CCATGG	1 cut(s)	207
BspACI	CCGC	3 cut(s)	71, 75, 357
BspANI	GGCC	3 cut(s)	5, 173, 360
BspCNI	CTCAG	3 cut(s)	105, 214, 598
BspFNI	CGCG	1 cut(s)	252
BspLI	GGNNCC	2 cut(s)	286, 733
BspQI	GCTCTTC	1 cut(s)	30
BssECI	CCNNGG	2 cut(s)	187, 207
BssMI	GATC	1 cut(s)	763
BssT1I	CCWWGG	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	373, 577
Bst6I	CTCTTC	1 cut(s)	30
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstC8I	GCNNGC	8 cut(s)	17, 21, 55, 75, 219, 438, 528, 648
BstDEI	CTNAG	6 cut(s)	113, 213, 222, 307, 606, 767
BstDSI	CCRYGG	1 cut(s)	207
BstF5I	GGATG	2 cut(s)	480, 661
BstFNI	CGCG	1 cut(s)	252
BstHHI	GCGC	1 cut(s)	252
BstKTI	GATC	1 cut(s)	766
BstMBI	GATC	1 cut(s)	763
BstMWI	GCNNNNNNNGC	7 cut(s)	95, 157, 218, 317, 366, 422, 758
BstNI	CCWGG	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	444
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	2 cut(s)	101, 169
BstX2I	RGATCY	1 cut(s)	763
BstYI	RGATCY	1 cut(s)	763
BsuRI	GGCC	3 cut(s)	5, 173, 360
BtgI	CCRYGG	1 cut(s)	207
BtsCI	GGATG	2 cut(s)	480, 661
BtsIMutI	CAGTG	1 cut(s)	369
Cac8I	GCNNGC	8 cut(s)	17, 21, 55, 75, 219, 438, 528, 648
CfoI	GCGC	1 cut(s)	252
Cfr13I	GGNCC	4 cut(s)	4, 285, 455, 509
Csp6I	GTAC	2 cut(s)	226, 428
CviAII	CATG	1 cut(s)	208
CviQI	GTAC	2 cut(s)	226, 428
DdeI	CTNAG	6 cut(s)	113, 213, 222, 307, 606, 767
DpnI	GATC	1 cut(s)	765
DpnII	GATC	1 cut(s)	763
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	207
Eco47I	GGWCC	3 cut(s)	285, 455, 509
Eco57I	CTGAAG	2 cut(s)	11, 480
EcoO109I	RGGNCCY	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	207
EcoT22I	ATGCAT	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	1 cut(s)	211
FaiI	YATR	8 cut(s)	50, 94, 96, 107, 182, 209, 693, 803
FaqI	GGGAC	2 cut(s)	298, 527
FatI	CATG	1 cut(s)	207
FauI	CCCGC	1 cut(s)	82
FauNDI	CATATG	1 cut(s)	94
Fnu4HI	GCNGC	4 cut(s)	71, 90, 158, 358
FokI	GGATG	2 cut(s)	467, 648
Fsp4HI	GCNGC	4 cut(s)	71, 90, 158, 358
FspBI	CTAG	1 cut(s)	362
GlaI	GCGC	1 cut(s)	251
GluI	GCNGC	4 cut(s)	71, 90, 158, 358
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	3 cut(s)	5, 173, 360
HapII	CCGG	2 cut(s)	152, 723
HhaI	GCGC	1 cut(s)	252
Hin1II	CATG	1 cut(s)	211
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HincII	GTYRAC	1 cut(s)	714
HindII	GTYRAC	1 cut(s)	714
HinfI	GANTC	4 cut(s)	164, 400, 563, 595
HpaII	CCGG	2 cut(s)	152, 723
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	2 cut(s)	376, 714
Hpy188I	TCNGA	5 cut(s)	114, 399, 405, 607, 775
Hpy188III	TCNNGA	4 cut(s)	458, 587, 665, 703
Hpy8I	GTNNAC	2 cut(s)	376, 714
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	5 cut(s)	111, 124, 443, 667, 722
HpyCH4III	ACNGT	2 cut(s)	373, 577
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	4 cut(s)	98, 293, 369, 425
HpyF10VI	GCNNNNNNNGC	7 cut(s)	95, 157, 218, 317, 366, 422, 758
HpyF3I	CTNAG	6 cut(s)	113, 213, 222, 307, 606, 767
HpySE526I	ACGT	1 cut(s)	504
Hsp92II	CATG	1 cut(s)	211
HspAI	GCGC	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	763
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	4 cut(s)	154, 493, 731, 758
Lsp1109I	GCAGC	2 cut(s)	101, 169
LweI	GCATC	1 cut(s)	753
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	1 cut(s)	695
MalI	GATC	1 cut(s)	765
MboI	GATC	1 cut(s)	763
MboII	GAAGA	2 cut(s)	17, 718
MflI	RGATCY	1 cut(s)	763
MhlI	GDGCHC	2 cut(s)	203, 490
MluCI	AATT	3 cut(s)	568, 640, 668
MmeI	TCCRAC	2 cut(s)	540, 736
MnlI	CCTC	9 cut(s)	17, 91, 184, 185, 332, 406, 583, 745, 806
Mph1103I	ATGCAT	1 cut(s)	100
MroXI	GAANNNNTTC	1 cut(s)	465
MseI	TTAA	1 cut(s)	261
MslI	CAYNNNNRTG	1 cut(s)	206
MspI	CCGG	2 cut(s)	152, 723
MspR9I	CCNGG	1 cut(s)	189
Mva1269I	GAATGC	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	189
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	7 cut(s)	95, 157, 218, 317, 366, 422, 758
NcoI	CCATGG	1 cut(s)	207
NdeI	CATATG	1 cut(s)	94
NdeII	GATC	1 cut(s)	763
NlaIII	CATG	1 cut(s)	211
NlaIV	GGNNCC	2 cut(s)	286, 733
NsiI	ATGCAT	1 cut(s)	100
PciSI	GCTCTTC	1 cut(s)	30
PctI	GAATGC	1 cut(s)	98
PdmI	GAANNNNTTC	1 cut(s)	465
PfeI	GAWTC	4 cut(s)	164, 400, 563, 595
PkrI	GCNGC	4 cut(s)	72, 91, 159, 359
PpuMI	RGGWCCY	1 cut(s)	285
PsiI	TTATAA	1 cut(s)	182
Psp5II	RGGWCCY	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	286, 733
PspPI	GGNCC	4 cut(s)	4, 285, 455, 509
PspPPI	RGGWCCY	1 cut(s)	285
PsrI	GAACNNNNNNTAC	2 cut(s)	411, 443
PsuI	RGATCY	1 cut(s)	763
RsaI	GTAC	2 cut(s)	227, 429
RsaNI	GTAC	2 cut(s)	226, 428
RseI	CAYNNNNRTG	1 cut(s)	206
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	4 cut(s)	71, 90, 158, 358
Sau3AI	GATC	1 cut(s)	763
Sau96I	GGNCC	4 cut(s)	4, 285, 455, 509
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	2 cut(s)	203, 490
SfaNI	GCATC	1 cut(s)	753
SfcI	CTRYAG	1 cut(s)	444
SinI	GGWCC	3 cut(s)	285, 455, 509
SmiMI	CAYNNNNRTG	1 cut(s)	206
SmlI	CTYRAG	2 cut(s)	585, 736
SmoI	CTYRAG	2 cut(s)	585, 736
Sse9I	AATT	3 cut(s)	568, 640, 668
SsiI	CCGC	3 cut(s)	71, 75, 357
SspMI	CTAG	1 cut(s)	362
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	2 cut(s)	373, 577
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	3 cut(s)	102, 631, 685
TasI	AATT	3 cut(s)	568, 640, 668
TauI	GCSGC	2 cut(s)	73, 360
TfiI	GAWTC	4 cut(s)	164, 400, 563, 595
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	1 cut(s)	376
TseI	GCWGC	2 cut(s)	89, 157
TspDTI	ATGAA	1 cut(s)	469
TspGWI	ACGGA	1 cut(s)	473
TspRI	CASTG	1 cut(s)	376
VpaK11BI	GGWCC	3 cut(s)	285, 455, 509
XapI	RAATTY	2 cut(s)	568, 640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	556
XmnI	GAANNNNTTC	1 cut(s)	465
XspI	CTAG	1 cut(s)	362
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.