Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0010999

Physical Location & Seq

Genomic Coordinates Forward (+)

9933053 .. 9935187

Gene Structure 2135 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1113000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCCCTCGTCGGCGTTCTTGCTCTTCAGGGGCTTGGGGTGAAGGGCGTGGAGATAAGGAAGCCAGAGCAGCTTGAAACCGTGGCCTCCCTTATAATCCCTGGAGGGGAGAGCACCACCATGGCTAAGCTCGCCGAGTACCACAACCTGTTTCCTGCTCTGCGTGAGTTTGTTAAAATGGGGAAGCCTGTTTGGGGGACCTGTGCAGGTCTTATTTTCTTAGCAAACAAAGCTACAGGACAGAAAATAGGAGGACAGGAACTTGTTGGCGGCCTAGATTGCACCGTCCACAGAAACTTCTTTGGCAGTCAGATTCAGAGCTTTGAGGCTGAGCTTGCAGTACCAGAGCTTGCTTCTACGGAAGGTGGTCCTCAAGTATTTCGTGGAGTTTTCATCCGTGCTCCCGCTATCCTTGATGTAGGACCAGAAGTTGAAGTTCTGGCTGATTATCCTGTTCCATCTAATAAGGTGGTGGATTCAAATTCTGCAGTTGAAGCTCAAGAGGAGAATCCTGTGCCTGAGAATAAAGTGATTGTAGCAGTTCGACAGAAGAATTTGCTGGCAACTGCCTTCCATCCTGAATTGACAGCAGACACTCGATGGCATAGTTACTTCTTGAAGATGTCAACTGAAACAGGAGAAGGAGGCATCGTTGCTGTTGGAGCAGATCTAAGTTTAAACCAACAAAACAAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004359 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008614 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0032991 GO:0034641 GO:0042364 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0046982 GO:0046983 GO:0051186 GO:0051188 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1903600

KEGG Pathways

Metabolic & Signaling

ko00750 map00750

Pfam Domains

Protein Families

SNO

Protein Analysis

233

Amino Acids

24.79

Weight (kDa)

5.1

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNO	PF01174	10 - 209	2.7e-43	SNO glutamine amidotransferase family
GATase_3	PF07685	16 - 96	1.4e-07	CobB/CobQ-like glutamine amidotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60540
fragaria_vesca	FvH4_3g32570 FvH4_3g32570 FvH4_3g32570 FvH4_3g32570 FvH4_3g32570 FvH4_3g32570
malus_domestica	MD03G1113000.v1.1 MD11G1133800.v1.1
prunus_persica	Prupe.6G100100_v2.0.a1
pyrus_communis	pycom11g11030
rosa_chinensis	RchiOBHm_Chr5g0059641
rosa_laevigata	RLG00000035317
rosa_multiflora	Rmu_sc0001146.1_g000002
rosa_roxburghii	Rroxscaffold_1G00020970
rosa_rugosa	Rorug05G0323800
rosa_samantha	Rh5AG389100 Rh5BG400800 Rh5DG417200
rosa_wichuraiana	Rw5G036630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	95
Acc36I	ACCTGC	1 cut(s)	197
AciI	CCGC	2 cut(s)	270, 405
AcsI	RAATTY	2 cut(s)	481, 553
AcuI	CTGAAG	1 cut(s)	11
AfaI	GTAC	2 cut(s)	140, 342
AfiI	CCNNNNNNNGG	2 cut(s)	106, 194
AgsI	TTSAA	5 cut(s)	77, 434, 480, 494, 619
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	7 cut(s)	73, 130, 233, 321, 334, 349, 497
AluI	AGCT	7 cut(s)	73, 130, 233, 321, 334, 349, 497
Alw21I	GWGCWC	2 cut(s)	116, 403
AoxI	GGCC	3 cut(s)	3, 84, 271
ApeKI	GCWGC	1 cut(s)	70
ApoI	RAATTY	2 cut(s)	481, 553
AspS9I	GGNCC	4 cut(s)	4, 198, 368, 422
AsuHPI	GGTGA	1 cut(s)	52
AvaII	GGWCC	3 cut(s)	198, 368, 422
Bbv12I	GWGCWC	2 cut(s)	116, 403
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	3 cut(s)	466, 582, 594
BciT130I	CCWGG	1 cut(s)	102
BfaI	CTAG	1 cut(s)	275
BfmI	CTRYAG	2 cut(s)	234, 486
BfuAI	ACCTGC	1 cut(s)	197
BglII	AGATCT	1 cut(s)	667
BisI	GCNGC	2 cut(s)	71, 271
BlpI	GCTNAGC	2 cut(s)	126, 330
BlsI	GCNGC	2 cut(s)	72, 272
Bme1390I	CCNGG	1 cut(s)	102
Bme18I	GGWCC	3 cut(s)	198, 368, 422
BmgT120I	GGNCC	4 cut(s)	4, 198, 368, 422
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	102
BmsI	GCATC	1 cut(s)	657
BpmI	CTGGAG	1 cut(s)	123
Bpu1102I	GCTNAGC	2 cut(s)	126, 330
BpuEI	CTTGAG	2 cut(s)	357, 483
BsaJI	CCNNGG	3 cut(s)	81, 100, 120
BsaXI	ACNNNNNCTCC	2 cut(s)	636, 666
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 194
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	3 cut(s)	81, 100, 120
BseGI	GGATG	2 cut(s)	393, 574
BseLI	CCNNNNNNNGG	2 cut(s)	106, 194
BseMII	CTCAG	2 cut(s)	321, 510
BseRI	GAGGAG	1 cut(s)	518
BseXI	GCAGC	1 cut(s)	82
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	3 cut(s)	5, 86, 273
BsiHKAI	GWGCWC	2 cut(s)	116, 403
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	2 cut(s)	106, 194
BsmFI	GGGAC	1 cut(s)	211
BsnI	GGCC	3 cut(s)	5, 86, 273
Bsp1286I	GDGCHC	2 cut(s)	116, 403
Bsp143I	GATC	1 cut(s)	667
Bsp1720I	GCTNAGC	2 cut(s)	126, 330
Bsp19I	CCATGG	1 cut(s)	120
BspACI	CCGC	2 cut(s)	270, 405
BspANI	GGCC	3 cut(s)	5, 86, 273
BspCNI	CTCAG	2 cut(s)	322, 511
BspLI	GGNNCC	1 cut(s)	199
BspMAI	CTGCAG	1 cut(s)	490
BspMI	ACCTGC	1 cut(s)	197
BspQI	GCTCTTC	1 cut(s)	30
BssECI	CCNNGG	3 cut(s)	81, 100, 120
BssMI	GATC	1 cut(s)	667
BssT1I	CCWWGG	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	102
Bst4CI	ACNGT	2 cut(s)	82, 286
Bst6I	CTCTTC	1 cut(s)	30
BstC8I	GCNNGC	4 cut(s)	132, 336, 351, 561
BstDEI	CTNAG	5 cut(s)	126, 220, 330, 519, 671
BstDSI	CCRYGG	2 cut(s)	81, 120
BstF5I	GGATG	2 cut(s)	393, 574
BstKTI	GATC	1 cut(s)	670
BstMBI	GATC	1 cut(s)	667
BstMWI	GCNNNNNNNGC	7 cut(s)	70, 131, 230, 279, 335, 494, 662
BstNI	CCWGG	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	100
BstSFI	CTRYAG	2 cut(s)	234, 486
BstV1I	GCAGC	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	667
BstYI	RGATCY	1 cut(s)	667
BsuRI	GGCC	3 cut(s)	5, 86, 273
BtgI	CCRYGG	2 cut(s)	81, 120
BtsCI	GGATG	2 cut(s)	393, 574
BveI	ACCTGC	1 cut(s)	197
Cac8I	GCNNGC	4 cut(s)	132, 336, 351, 561
Cfr13I	GGNCC	4 cut(s)	4, 198, 368, 422
Csp6I	GTAC	2 cut(s)	139, 341
CviAII	CATG	1 cut(s)	121
CviQI	GTAC	2 cut(s)	139, 341
DdeI	CTNAG	5 cut(s)	126, 220, 330, 519, 671
DpnI	GATC	1 cut(s)	669
DpnII	GATC	1 cut(s)	667
DraI	TTTAAA	1 cut(s)	678
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	120
Eco47I	GGWCC	3 cut(s)	198, 368, 422
Eco57I	CTGAAG	1 cut(s)	11
EcoO109I	RGGNCCY	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	1 cut(s)	124
FaiI	YATR	3 cut(s)	95, 122, 606
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	1 cut(s)	120
FauI	CCCGC	1 cut(s)	412
Fnu4HI	GCNGC	2 cut(s)	71, 271
FokI	GGATG	2 cut(s)	380, 561
Fsp4HI	GCNGC	2 cut(s)	71, 271
FspBI	CTAG	1 cut(s)	275
GluI	GCNGC	2 cut(s)	71, 271
GsuI	CTGGAG	1 cut(s)	123
HaeIII	GGCC	3 cut(s)	5, 86, 273
Hin1II	CATG	1 cut(s)	124
HincII	GTYRAC	1 cut(s)	627
HindII	GTYRAC	1 cut(s)	627
HinfI	GANTC	3 cut(s)	313, 476, 508
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	2 cut(s)	289, 627
Hpy188I	TCNGA	2 cut(s)	312, 318
Hpy188III	TCNNGA	3 cut(s)	500, 578, 616
Hpy8I	GTNNAC	2 cut(s)	289, 627
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	4 cut(s)	37, 356, 580, 635
HpyCH4III	ACNGT	2 cut(s)	82, 286
HpyCH4V	TGCA	4 cut(s)	206, 282, 338, 488
HpyF10VI	GCNNNNNNNGC	7 cut(s)	70, 131, 230, 279, 335, 494, 662
HpyF3I	CTNAG	5 cut(s)	126, 220, 330, 519, 671
Hsp92II	CATG	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	667
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	2 cut(s)	406, 662
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	1 cut(s)	657
MaeI	CTAG	1 cut(s)	275
MaeIII	GTNAC	1 cut(s)	608
MalI	GATC	1 cut(s)	669
MboI	GATC	1 cut(s)	667
MboII	GAAGA	3 cut(s)	17, 562, 631
MflI	RGATCY	1 cut(s)	667
MhlI	GDGCHC	2 cut(s)	116, 403
MluCI	AATT	3 cut(s)	481, 553, 581
MmeI	TCCRAC	1 cut(s)	640
MnlI	CCTC	8 cut(s)	17, 97, 98, 245, 319, 381, 496, 638
MseI	TTAA	2 cut(s)	174, 677
MslI	CAYNNNNRTG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	102
MssI	GTTTAAAC	1 cut(s)	678
MvaI	CCWGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	7 cut(s)	70, 131, 230, 279, 335, 494, 662
NcoI	CCATGG	1 cut(s)	120
NdeII	GATC	1 cut(s)	667
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	1 cut(s)	199
NmeAIII	GCCGAG	1 cut(s)	160
PciSI	GCTCTTC	1 cut(s)	30
PfeI	GAWTC	3 cut(s)	313, 476, 508
PkrI	GCNGC	2 cut(s)	72, 272
PmeI	GTTTAAAC	1 cut(s)	678
PpuMI	RGGWCCY	1 cut(s)	198
PsiI	TTATAA	1 cut(s)	95
Psp5II	RGGWCCY	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	4 cut(s)	4, 198, 368, 422
PspPPI	RGGWCCY	1 cut(s)	198
PstI	CTGCAG	1 cut(s)	490
PsuI	RGATCY	1 cut(s)	667
RsaI	GTAC	2 cut(s)	140, 342
RsaNI	GTAC	2 cut(s)	139, 341
RseI	CAYNNNNRTG	1 cut(s)	119
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	2 cut(s)	174, 677
SatI	GCNGC	2 cut(s)	71, 271
Sau3AI	GATC	1 cut(s)	667
Sau96I	GGNCC	4 cut(s)	4, 198, 368, 422
ScrFI	CCNGG	1 cut(s)	102
SduI	GDGCHC	2 cut(s)	116, 403
SfaNI	GCATC	1 cut(s)	657
SfcI	CTRYAG	2 cut(s)	234, 486
SinI	GGWCC	3 cut(s)	198, 368, 422
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	2 cut(s)	372, 498
SmoI	CTYRAG	2 cut(s)	372, 498
Sse9I	AATT	3 cut(s)	481, 553, 581
SsiI	CCGC	2 cut(s)	270, 405
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	1 cut(s)	100
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	2 cut(s)	82, 286
TaqI	TCGA	2 cut(s)	544, 598
TasI	AATT	3 cut(s)	481, 553, 581
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	3 cut(s)	313, 476, 508
Tru1I	TTAA	2 cut(s)	174, 677
Tru9I	TTAA	2 cut(s)	174, 677
TseI	GCWGC	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	382
TspGWI	ACGGA	2 cut(s)	374, 386
VpaK11BI	GGWCC	3 cut(s)	198, 368, 422
XapI	RAATTY	2 cut(s)	481, 553
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.