Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Forward (+)

38867717 .. 38871943

Gene Structure 4227 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0323800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGAAAACAAGGGTAAGAGGGAGGTGGTGGTCTCAGCTTTGCAGTTCGCTTGCACCGACGACGTCGCCACCAACGTCGCCACCGCCGAAAGGTTGGTTAGAGCTGCTCATTCAAAGGGTGCAAACATCATTCTTATACAGGAGCTTTTTGAAGGATATTACTTCTGTCAAGCACAAAGGGAGGACTTCATTCAGCGAGCAAAGCCTTACAGCAACCATCCAACTATTCTTAGGATGCAGAAACTTGCAAAAGAGTTGGGTGTGGTAATACCAGTTAGCTTTTTTGAAGAGGCGAACAATGCCCACTACAATTCAATTGCCATTATTGATGCAGATGGTGCCGATCTTGGACTTTATAGAAAGTCCCACATCCCAGATGGACCAGGCTACCAGGAAAAGTTCTACTTCAATCCAGGTGACACTGGATTCAAGGTTTTCCAGACCAAGTTCGCAAAAATAGGAGTTGCAATTTGCTGGGATCAATGGTTTCCTGAGGCAGCCCGAGCTTTGGTTCTTCAAGGTGCAGAGATTTTGTTTTATCCTACTGCTATTGGTTCTGAACCTCAAGATGGAGGACTTGATTCTAGGGATCACTGGAGGCGAGTAATGCAAGGGCATGCTGGGGCGAATTTGGTGCCTGTAGTAACATCAAACCGCATAGGAAAGGAGATAATTGAGACTGAGCATGGAAAGAGTGAGATCACATTTTATGGTAACTCTTTCATAGCAGGACCTACTGGAGAAATTGTTACAGCTGCTAATGATAAAGATGAAGCGGTACTAGTGGCAGAATTTGATTTGGATAAGATCAAATGCAAGAGGCATAGCTGGGGAGTATTCCGTGATCGACGTCCAGAGTTATACAAGGTGCTACTTTCGTTAGATGGCAAGAACACCCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004359 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008614 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0032991 GO:0034641 GO:0042364 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0046982 GO:0046983 GO:0051186 GO:0051188 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1903600

KEGG Pathways

Metabolic & Signaling

ko00750 map00750

Pfam Domains

Protein Families

SNO

Protein Analysis

300

Amino Acids

33.47

Weight (kDa)

6.09

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CN_hydrolase	PF00795	13 - 270	1.4e-54	Carbon-nitrogen hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	66, 853
AccB1I	GGYRCC	2 cut(s)	338, 634
AciI	CCGC	3 cut(s)	84, 655, 776
AclWI	GGATC	2 cut(s)	486, 597
AcsI	RAATTY	2 cut(s)	628, 791
AcyI	GRCGYC	2 cut(s)	63, 850
AfaI	GTAC	1 cut(s)	780
AfiI	CCNNNNNNNGG	3 cut(s)	90, 508, 569
AgsI	TTSAA	7 cut(s)	114, 152, 287, 315, 409, 430, 518
AhlI	ACTAGT	1 cut(s)	781
AjnI	CCWGG	3 cut(s)	382, 390, 412
AluBI	AGCT	7 cut(s)	38, 104, 145, 279, 506, 755, 828
AluI	AGCT	7 cut(s)	38, 104, 145, 279, 506, 755, 828
Alw26I	GTCTC	2 cut(s)	37, 671
AlwI	GGATC	2 cut(s)	486, 597
Ama87I	CYCGRG	1 cut(s)	501
ApeKI	GCWGC	3 cut(s)	104, 497, 755
ApoI	RAATTY	2 cut(s)	628, 791
AspS9I	GGNCC	2 cut(s)	380, 731
AsuHPI	GGTGA	1 cut(s)	428
AvaI	CYCGRG	1 cut(s)	501
AvaII	GGWCC	2 cut(s)	380, 731
AxyI	CCTNAGG	1 cut(s)	492
BanI	GGYRCC	2 cut(s)	338, 634
BbvI	GCAGC	3 cut(s)	91, 509, 742
BccI	CCATC	5 cut(s)	225, 329, 371, 563, 878
BcgI	CGANNNNNNTGC	2 cut(s)	616, 650
BciT130I	CCWGG	3 cut(s)	384, 392, 414
BcoDI	GTCTC	2 cut(s)	37, 671
BcuI	ACTAGT	1 cut(s)	781
BfaI	CTAG	2 cut(s)	585, 782
BfmI	CTRYAG	1 cut(s)	639
BisI	GCNGC	3 cut(s)	105, 498, 756
BlsI	GCNGC	3 cut(s)	106, 499, 757
Bme1390I	CCNGG	3 cut(s)	384, 392, 414
Bme18I	GGWCC	2 cut(s)	380, 731
BmeT110I	CYCGRG	1 cut(s)	501
BmgT120I	GGNCC	2 cut(s)	380, 731
BmiI	GGNNCC	2 cut(s)	340, 636
BmrFI	CCNGG	3 cut(s)	384, 392, 414
BmsI	GCATC	2 cut(s)	225, 319
BpmI	CTGGAG	2 cut(s)	616, 759
BpuEI	CTTGAG	1 cut(s)	549
BsaHI	GRCGYC	2 cut(s)	63, 850
BsaI	GGTCTC	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	732, 762
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 508, 569
Bse1I	ACTGG	4 cut(s)	272, 427, 599, 742
Bse21I	CCTNAGG	1 cut(s)	492
BseBI	CCWGG	3 cut(s)	384, 392, 414
BseGI	GGATG	3 cut(s)	217, 240, 369
BseLI	CCNNNNNNNGG	3 cut(s)	90, 508, 569
BseMII	CTCAG	3 cut(s)	48, 483, 672
BseNI	ACTGG	4 cut(s)	272, 427, 599, 742
BseXI	GCAGC	3 cut(s)	91, 509, 742
BseYI	CCCAGC	3 cut(s)	474, 620, 828
BsgI	GTGCAG	1 cut(s)	543
BshNI	GGYRCC	2 cut(s)	338, 634
BsiHKCI	CYCGRG	1 cut(s)	501
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	3 cut(s)	90, 508, 569
BsmAI	GTCTC	2 cut(s)	37, 671
BsmFI	GGGAC	1 cut(s)	349
Bso31I	GGTCTC	1 cut(s)	37
BsoBI	CYCGRG	1 cut(s)	501
Bsp143I	GATC	6 cut(s)	343, 478, 589, 699, 807, 844
BspACI	CCGC	3 cut(s)	84, 655, 776
BspCNI	CTCAG	3 cut(s)	47, 484, 673
BspLI	GGNNCC	2 cut(s)	340, 636
BspPI	GGATC	2 cut(s)	486, 597
BspT107I	GGYRCC	2 cut(s)	338, 634
BspTNI	GGTCTC	1 cut(s)	37
BsrI	ACTGG	4 cut(s)	272, 427, 599, 742
BssMI	GATC	6 cut(s)	343, 478, 589, 699, 807, 844
BssNI	GRCGYC	2 cut(s)	63, 850
Bst2UI	CCWGG	3 cut(s)	384, 392, 414
Bst6I	CTCTTC	1 cut(s)	282
BstACI	GRCGYC	2 cut(s)	63, 850
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstC8I	GCNNGC	3 cut(s)	52, 198, 618
BstDEI	CTNAG	4 cut(s)	34, 230, 492, 681
BstF5I	GGATG	3 cut(s)	217, 240, 369
BstKTI	GATC	6 cut(s)	346, 481, 592, 702, 810, 847
BstMAI	GTCTC	2 cut(s)	37, 671
BstMBI	GATC	6 cut(s)	343, 478, 589, 699, 807, 844
BstMWI	GCNNNNNNNGC	5 cut(s)	202, 299, 338, 503, 607
BstNI	CCWGG	3 cut(s)	384, 392, 414
BstNSI	RCATGY	1 cut(s)	620
BstSCI	CCNGG	3 cut(s)	382, 390, 412
BstSFI	CTRYAG	1 cut(s)	639
BstV1I	GCAGC	3 cut(s)	91, 509, 742
Bsu36I	CCTNAGG	1 cut(s)	492
BtsCI	GGATG	3 cut(s)	217, 240, 369
BtsIMutI	CAGTG	2 cut(s)	420, 592
Cac8I	GCNNGC	3 cut(s)	52, 198, 618
Cfr13I	GGNCC	2 cut(s)	380, 731
Csp6I	GTAC	1 cut(s)	779
CviAII	CATG	2 cut(s)	617, 686
CviQI	GTAC	1 cut(s)	779
DdeI	CTNAG	4 cut(s)	34, 230, 492, 681
DpnI	GATC	6 cut(s)	345, 480, 591, 701, 809, 846
DpnII	GATC	6 cut(s)	343, 478, 589, 699, 807, 844
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	2 cut(s)	380, 731
Eco81I	CCTNAGG	1 cut(s)	492
Eco88I	CYCGRG	1 cut(s)	501
EcoO109I	RGGNCCY	1 cut(s)	731
EcoRII	CCWGG	3 cut(s)	382, 390, 412
FaeI	CATG	2 cut(s)	620, 689
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	2 cut(s)	616, 685
Fnu4HI	GCNGC	3 cut(s)	105, 498, 756
FokI	GGATG	3 cut(s)	204, 247, 356
Fsp4HI	GCNGC	3 cut(s)	105, 498, 756
FspBI	CTAG	2 cut(s)	585, 782
GluI	GCNGC	3 cut(s)	105, 498, 756
GsaI	CCCAGC	3 cut(s)	478, 624, 832
GsuI	CTGGAG	2 cut(s)	616, 759
Hin1I	GRCGYC	2 cut(s)	63, 850
Hin1II	CATG	2 cut(s)	620, 689
HinfI	GANTC	2 cut(s)	426, 581
HphI	GGTGA	1 cut(s)	428
Hpy188I	TCNGA	1 cut(s)	559
Hpy188III	TCNNGA	4 cut(s)	439, 491, 566, 854
Hpy99I	CGWCG	5 cut(s)	62, 65, 68, 80, 852
HpyAV	CCTTC	1 cut(s)	146
HpyCH4IV	ACGT	3 cut(s)	63, 75, 850
HpyF10VI	GCNNNNNNNGC	5 cut(s)	202, 299, 338, 503, 607
HpyF3I	CTNAG	4 cut(s)	34, 230, 492, 681
HpySE526I	ACGT	3 cut(s)	63, 75, 850
Hsp92I	GRCGYC	2 cut(s)	63, 850
Hsp92II	CATG	2 cut(s)	620, 689
Kzo9I	GATC	6 cut(s)	343, 478, 589, 699, 807, 844
LmnI	GCTCC	1 cut(s)	142
Lsp1109I	GCAGC	3 cut(s)	91, 509, 742
LweI	GCATC	2 cut(s)	225, 319
MaeI	CTAG	2 cut(s)	585, 782
MaeII	ACGT	3 cut(s)	63, 75, 850
MaeIII	GTNAC	4 cut(s)	416, 643, 713, 748
MalI	GATC	6 cut(s)	345, 480, 591, 701, 809, 846
MboI	GATC	6 cut(s)	343, 478, 589, 699, 807, 844
MboII	GAAGA	2 cut(s)	299, 506
MfeI	CAATTG	1 cut(s)	315
MluCI	AATT	7 cut(s)	310, 315, 468, 628, 672, 744, 791
MmeI	TCCRAC	1 cut(s)	245
MnlI	CCTC	9 cut(s)	12, 16, 175, 283, 487, 566, 573, 591, 813
MspA1I	CMGCKG	1 cut(s)	755
MspR9I	CCNGG	3 cut(s)	384, 392, 414
MunI	CAATTG	1 cut(s)	315
MvaI	CCWGG	3 cut(s)	384, 392, 414
MwoI	GCNNNNNNNGC	5 cut(s)	202, 299, 338, 503, 607
NdeII	GATC	6 cut(s)	343, 478, 589, 699, 807, 844
NlaIII	CATG	2 cut(s)	620, 689
NlaIV	GGNNCC	2 cut(s)	340, 636
NmuCI	GTSAC	1 cut(s)	416
NspI	RCATGY	1 cut(s)	620
PaeI	GCATGC	1 cut(s)	620
PcsI	WCGNNNNNNNCGW	3 cut(s)	54, 72, 84
PfeI	GAWTC	2 cut(s)	426, 581
PflFI	GACNNNGTC	1 cut(s)	62
PkrI	GCNGC	3 cut(s)	106, 499, 757
PpuMI	RGGWCCY	1 cut(s)	731
Psp5II	RGGWCCY	1 cut(s)	731
Psp6I	CCWGG	3 cut(s)	382, 390, 412
PspFI	CCCAGC	3 cut(s)	474, 620, 828
PspGI	CCWGG	3 cut(s)	382, 390, 412
PspN4I	GGNNCC	2 cut(s)	340, 636
PspPI	GGNCC	2 cut(s)	380, 731
PspPPI	RGGWCCY	1 cut(s)	731
PsyI	GACNNNGTC	1 cut(s)	62
PvuII	CAGCTG	1 cut(s)	755
RsaI	GTAC	1 cut(s)	780
RsaNI	GTAC	1 cut(s)	779
SatI	GCNGC	3 cut(s)	105, 498, 756
Sau3AI	GATC	6 cut(s)	343, 478, 589, 699, 807, 844
Sau96I	GGNCC	2 cut(s)	380, 731
ScrFI	CCNGG	3 cut(s)	384, 392, 414
SfaNI	GCATC	2 cut(s)	225, 319
SfcI	CTRYAG	1 cut(s)	639
SinI	GGWCC	2 cut(s)	380, 731
SmlI	CTYRAG	1 cut(s)	564
SmoI	CTYRAG	1 cut(s)	564
SpeI	ACTAGT	1 cut(s)	781
SphI	GCATGC	1 cut(s)	620
Sse9I	AATT	7 cut(s)	310, 315, 468, 628, 672, 744, 791
SsiI	CCGC	3 cut(s)	84, 655, 776
SspMI	CTAG	2 cut(s)	585, 782
StyD4I	CCNGG	3 cut(s)	382, 390, 412
TaiI	ACGT	3 cut(s)	66, 78, 853
TaqI	TCGA	1 cut(s)	847
TasI	AATT	7 cut(s)	310, 315, 468, 628, 672, 744, 791
TfiI	GAWTC	2 cut(s)	426, 581
TscAI	CASTG	2 cut(s)	427, 599
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	3 cut(s)	104, 497, 755
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	3 cut(s)	178, 712, 786
TspGWI	ACGGA	1 cut(s)	830
TspRI	CASTG	2 cut(s)	427, 599
Tth111I	GACNNNGTC	1 cut(s)	62
VpaK11BI	GGWCC	2 cut(s)	380, 731
XapI	RAATTY	2 cut(s)	628, 791
XceI	RCATGY	1 cut(s)	620
XcmI	CCANNNNNNNNNTGG	1 cut(s)	374
XspI	CTAG	2 cut(s)	585, 782
ZraI	GACGTC	2 cut(s)	64, 851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.