RchiOBHm_Chr1g0341841

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000831
Physical Location & Seq
Reverse (-)
33691206 .. 33691448
243 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56852

Sequence Viewer

Length: 243 bp
ATGACGCCAGAAACAGCTCCGACATGTCTGCCTTGCTGCTTGCGACCACGTCCCACGCCCTCAGCACCGGACTCCACCCTCTCCTCTCCTCCTCGTCGCGCCTCGTTGTTGCTACCGCCGGATCCTCGCATTCCGGCTTCTCCCTCTCGCGGTAGCTCTGGCGACTCATCTCCAGAGCTTCGCCTCGCCGTCGCCGCCACAAATCCTTGCACCACCCAACGCCGCGTCTCCGGCTTCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.31

Weight (kDa)

9.46

Isoelectric Point (pI)

88.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 99, 150, 225
AciI CCGC 4 cut(s) 116, 150, 195, 223
AclWI GGATC 2 cut(s) 116, 129
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 149
AflIII ACRYGT 1 cut(s) 23
AjiI CACGTC 1 cut(s) 50
AluBI AGCT 3 cut(s) 17, 156, 178
AluI AGCT 3 cut(s) 17, 156, 178
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 2 cut(s) 116, 129
ApeKI GCWGC 1 cut(s) 36
AspLEI GCGC 1 cut(s) 101
BamHI GGATCC 1 cut(s) 121
BbvCI CCTCAGC 1 cut(s) 61
BbvI GCAGC 1 cut(s) 23
BceAI ACGGC 1 cut(s) 173
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BcoDI GTCTC 1 cut(s) 232
BisI GCNGC 3 cut(s) 37, 195, 223
BlsI GCNGC 3 cut(s) 38, 196, 224
BmgBI CACGTC 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 123
BpmI CTGGAG 1 cut(s) 156
Bpu10I CCTNAGC 1 cut(s) 61
BsaHI GRCGYC 1 cut(s) 5
BsaWI WCCGGW 1 cut(s) 67
Bsc4I CCNNNNNNNGG 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMII CTCAG 1 cut(s) 75
BseRI GAGGAG 3 cut(s) 73, 78, 81
BseXI GCAGC 1 cut(s) 23
Bsh1236I CGCG 3 cut(s) 99, 150, 225
BsiSI CCGG 4 cut(s) 68, 119, 134, 231
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 232
BsmBI CGTCTC 1 cut(s) 232
BsmFI GGGAC 1 cut(s) 36
BsmI GAATGC 1 cut(s) 129
Bsp143I GATC 1 cut(s) 121
BspACI CCGC 4 cut(s) 116, 150, 195, 223
BspCNI CTCAG 1 cut(s) 74
BspFNI CGCG 3 cut(s) 99, 150, 225
BspLI GGNNCC 1 cut(s) 123
BspPI GGATC 2 cut(s) 116, 129
BssMI GATC 1 cut(s) 121
BssNI GRCGYC 1 cut(s) 5
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 41
BstDEI CTNAG 1 cut(s) 61
BstFNI CGCG 3 cut(s) 99, 150, 225
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 1 cut(s) 124
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 2 cut(s) 194, 231
BstNSI RCATGY 1 cut(s) 27
BstUI CGCG 3 cut(s) 99, 150, 225
BstV1I GCAGC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BtrI CACGTC 1 cut(s) 50
Cac8I GCNNGC 1 cut(s) 41
CfoI GCGC 1 cut(s) 101
CseI GACGC 2 cut(s) 13, 214
CviAII CATG 1 cut(s) 24
CviJI RGCY 5 cut(s) 17, 137, 156, 178, 234
CviKI_1 RGCY 5 cut(s) 17, 137, 156, 178, 234
DdeI CTNAG 1 cut(s) 61
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
Esp3I CGTCTC 1 cut(s) 232
FaeI CATG 1 cut(s) 27
FaiI YATR 1 cut(s) 25
FaqI GGGAC 1 cut(s) 36
FatI CATG 1 cut(s) 23
Fnu4HI GCNGC 3 cut(s) 37, 195, 223
Fsp4HI GCNGC 3 cut(s) 37, 195, 223
GlaI GCGC 1 cut(s) 100
GluI GCNGC 3 cut(s) 37, 195, 223
GsuI CTGGAG 1 cut(s) 156
HapII CCGG 4 cut(s) 68, 119, 134, 231
HgaI GACGC 2 cut(s) 13, 214
HhaI GCGC 1 cut(s) 101
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 27
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HinfI GANTC 2 cut(s) 71, 164
HpaII CCGG 4 cut(s) 68, 119, 134, 231
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 1 cut(s) 173
Hpy99I CGWCG 2 cut(s) 99, 194
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 1 cut(s) 210
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 231
HpyF3I CTNAG 1 cut(s) 61
HpySE526I ACGT 1 cut(s) 49
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 27
HspAI GCGC 1 cut(s) 99
Kzo9I GATC 1 cut(s) 121
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 6 cut(s) 21, 81, 132, 144, 147, 186
Lsp1109I GCAGC 1 cut(s) 23
MaeII ACGT 1 cut(s) 49
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MflI RGATCY 1 cut(s) 121
MlyI GAGTC 2 cut(s) 65, 158
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 9 cut(s) 70, 89, 94, 99, 102, 112, 135, 154, 194
MspI CCGG 4 cut(s) 68, 119, 134, 231
Mva1269I GAATGC 1 cut(s) 129
MvnI CGCG 3 cut(s) 99, 150, 225
MwoI GCNNNNNNNGC 2 cut(s) 194, 231
NdeII GATC 1 cut(s) 121
NlaIII CATG 1 cut(s) 27
NlaIV GGNNCC 1 cut(s) 123
NspI RCATGY 1 cut(s) 27
PciI ACATGT 1 cut(s) 23
PctI GAATGC 1 cut(s) 129
PflFI GACNNNGTC 1 cut(s) 48
PkrI GCNGC 3 cut(s) 38, 196, 224
PleI GAGTC 2 cut(s) 65, 158
PpsI GAGTC 2 cut(s) 65, 158
PscI ACATGT 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 123
PsuI RGATCY 1 cut(s) 121
PsyI GACNNNGTC 1 cut(s) 48
SatI GCNGC 3 cut(s) 37, 195, 223
Sau3AI GATC 1 cut(s) 121
SchI GAGTC 2 cut(s) 65, 158
SetI ASST 4 cut(s) 19, 52, 158, 180
SsiI CCGC 4 cut(s) 116, 150, 195, 223
TaiI ACGT 1 cut(s) 52
TauI GCSGC 2 cut(s) 197, 225
TseI GCWGC 1 cut(s) 36
Tth111I GACNNNGTC 1 cut(s) 48
XceI RCATGY 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.