Rh1BG135400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000831
Physical Location & Seq
Forward (+)
22629674 .. 22629997
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG135400.1

Sequence Viewer

Length: 324 bp
ATGCCTGACACCGCCGTGACCCGTCCTGGGCTTTGTCAGGCCAGAAATTTTCCGAGCTTTTACCACAGGCGAGATTCTCAGCGTTCATCCTTGATTGTTCCGCGATTTTTGATGTGTTTCCCCCATAAAAAGCCTTTGAGCTCGGCTAATTCTCCACCACCGCTTCTCGATGACGCCGGAAACAGTTCCAACCGGTCTGCCTTGCTGCTTGCGACCACGTCCCACGCCCTCAGCGCCAGACTCCACCCGATCCTCTCCTCCTCGTCGCGCCTCGTTGTTTCTACCTCCGGATCCTCGCATTCCGGCTTCTCCCTCGCGCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.53

Weight (kDa)

11.43

Isoelectric Point (pI)

63.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 103, 268, 317, 319
AccIII TCCGGA 1 cut(s) 287
AciI CCGC 3 cut(s) 12, 101, 161
AclWI GGATC 3 cut(s) 244, 285, 298
AcsI RAATTY 1 cut(s) 46
AcyI GRCGYC 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 27
AgeI ACCGGT 1 cut(s) 192
AjiI CACGTC 1 cut(s) 219
AjnI CCWGG 1 cut(s) 25
AleI CACNNNNGTG 1 cut(s) 14
AluBI AGCT 2 cut(s) 57, 141
AluI AGCT 2 cut(s) 57, 141
Alw21I GWGCWC 1 cut(s) 143
AlwI GGATC 3 cut(s) 244, 285, 298
Aor13HI TCCGGA 1 cut(s) 287
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 205
ApoI RAATTY 1 cut(s) 46
AsiGI ACCGGT 1 cut(s) 192
Asp700I GAANNNNTTC 1 cut(s) 184
AspLEI GCGC 3 cut(s) 236, 270, 319
BamHI GGATCC 1 cut(s) 290
BanII GRGCYC 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 143
BbvCI CCTCAGC 1 cut(s) 230
BbvI GCAGC 1 cut(s) 192
BciT130I CCWGG 1 cut(s) 27
BfoI RGCGCY 1 cut(s) 237
BisI GCNGC 1 cut(s) 206
BlsI GCNGC 1 cut(s) 207
Bme1390I CCNGG 1 cut(s) 27
BmgBI CACGTC 1 cut(s) 219
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 230
BsaHI GRCGYC 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 26
BsaWI WCCGGW 2 cut(s) 192, 287
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse118I RCCGGY 1 cut(s) 192
BseAI TCCGGA 1 cut(s) 287
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 27
BseMII CTCAG 2 cut(s) 92, 244
BseRI GAGGAG 2 cut(s) 247, 250
BseXI GCAGC 1 cut(s) 192
Bsh1236I CGCG 4 cut(s) 103, 268, 317, 319
BshFI GGCC 1 cut(s) 41
BshTI ACCGGT 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 143
BsiSI CCGG 4 cut(s) 177, 193, 288, 303
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 205
BsmI GAATGC 1 cut(s) 298
BsnI GGCC 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 143
Bsp13I TCCGGA 1 cut(s) 287
Bsp143I GATC 2 cut(s) 249, 290
BspACI CCGC 3 cut(s) 12, 101, 161
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 2 cut(s) 91, 243
BspEI TCCGGA 1 cut(s) 287
BspFNI CGCG 4 cut(s) 103, 268, 317, 319
BspLI GGNNCC 1 cut(s) 292
BspPI GGATC 3 cut(s) 244, 285, 298
BsrFI RCCGGY 1 cut(s) 192
BssAI RCCGGY 1 cut(s) 192
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 2 cut(s) 249, 290
BssNI GRCGYC 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 185
BstACI GRCGYC 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 2 cut(s) 78, 230
BstF5I GGATG 1 cut(s) 86
BstFNI CGCG 4 cut(s) 103, 268, 317, 319
BstH2I RGCGCY 1 cut(s) 237
BstHHI GCGC 3 cut(s) 236, 270, 319
BstKTI GATC 2 cut(s) 252, 293
BstMBI GATC 2 cut(s) 249, 290
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNI CCWGG 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 25
BstUI CGCG 4 cut(s) 103, 268, 317, 319
BstV1I GCAGC 1 cut(s) 192
BstX2I RGATCY 1 cut(s) 290
BstYI RGATCY 1 cut(s) 290
BsuRI GGCC 1 cut(s) 41
BtrI CACGTC 1 cut(s) 219
BtsCI GGATG 1 cut(s) 86
Cac8I GCNNGC 1 cut(s) 210
CfoI GCGC 3 cut(s) 236, 270, 319
Cfr10I RCCGGY 1 cut(s) 192
CseI GACGC 1 cut(s) 182
CspAI ACCGGT 1 cut(s) 192
CviJI RGCY 7 cut(s) 31, 41, 57, 133, 141, 146, 306
CviKI_1 RGCY 7 cut(s) 31, 41, 57, 133, 141, 146, 306
DdeI CTNAG 2 cut(s) 78, 230
DpnI GATC 2 cut(s) 251, 292
DpnII GATC 2 cut(s) 249, 290
Ecl136II GAGCTC 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 143
Eco53kI GAGCTC 1 cut(s) 141
EcoICRI GAGCTC 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 25
EcoT38I GRGCYC 1 cut(s) 143
FaiI YATR 1 cut(s) 126
FaqI GGGAC 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 206
FokI GGATG 1 cut(s) 73
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 206
GlaI GCGC 3 cut(s) 235, 269, 318
GluI GCNGC 1 cut(s) 206
HaeII RGCGCY 1 cut(s) 237
HaeIII GGCC 1 cut(s) 41
HapII CCGG 4 cut(s) 177, 193, 288, 303
HgaI GACGC 1 cut(s) 182
HhaI GCGC 3 cut(s) 236, 270, 319
Hin1I GRCGYC 1 cut(s) 174
Hin6I GCGC 3 cut(s) 234, 268, 317
HinP1I GCGC 3 cut(s) 234, 268, 317
HinfI GANTC 2 cut(s) 74, 240
HpaII CCGG 4 cut(s) 177, 193, 288, 303
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 2 cut(s) 167, 288
Hpy99I CGWCG 1 cut(s) 268
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4IV ACGT 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 2 cut(s) 78, 230
HpySE526I ACGT 1 cut(s) 218
Hsp92I GRCGYC 1 cut(s) 174
HspAI GCGC 3 cut(s) 234, 268, 317
Kpn2I TCCGGA 1 cut(s) 287
Kzo9I GATC 2 cut(s) 249, 290
Lsp1109I GCAGC 1 cut(s) 192
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 1 cut(s) 16
MalI GATC 2 cut(s) 251, 292
MboI GATC 2 cut(s) 249, 290
MflI RGATCY 1 cut(s) 290
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 2 cut(s) 46, 148
MlyI GAGTC 1 cut(s) 234
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 8 cut(s) 239, 263, 268, 271, 281, 295, 304, 323
MroI TCCGGA 1 cut(s) 287
MroXI GAANNNNTTC 1 cut(s) 184
MslI CAYNNNNRTG 1 cut(s) 14
MspI CCGG 4 cut(s) 177, 193, 288, 303
MspR9I CCNGG 1 cut(s) 27
Mva1269I GAATGC 1 cut(s) 298
MvaI CCWGG 1 cut(s) 27
MvnI CGCG 4 cut(s) 103, 268, 317, 319
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeII GATC 2 cut(s) 249, 290
NlaIV GGNNCC 1 cut(s) 292
NmeAIII GCCGAG 1 cut(s) 122
NmuCI GTSAC 1 cut(s) 16
OliI CACNNNNGTG 1 cut(s) 14
PctI GAATGC 1 cut(s) 298
PdmI GAANNNNTTC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 74
PflFI GACNNNGTC 1 cut(s) 217
PinAI ACCGGT 1 cut(s) 192
PkrI GCNGC 1 cut(s) 207
PleI GAGTC 1 cut(s) 234
PpsI GAGTC 1 cut(s) 234
Psp124BI GAGCTC 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 25
PspGI CCWGG 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 292
PsuI RGATCY 1 cut(s) 290
PsyI GACNNNGTC 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 14
SacI GAGCTC 1 cut(s) 143
SatI GCNGC 1 cut(s) 206
Sau3AI GATC 2 cut(s) 249, 290
SchI GAGTC 1 cut(s) 234
ScrFI CCNGG 1 cut(s) 27
SduI GDGCHC 1 cut(s) 143
SetI ASST 4 cut(s) 59, 143, 221, 287
SmiMI CAYNNNNRTG 1 cut(s) 14
Sse9I AATT 2 cut(s) 46, 148
SsiI CCGC 3 cut(s) 12, 101, 161
SstI GAGCTC 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 25
TaaI ACNGT 1 cut(s) 185
TaiI ACGT 1 cut(s) 221
TaqI TCGA 1 cut(s) 168
TasI AATT 2 cut(s) 46, 148
TfiI GAWTC 1 cut(s) 74
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 1 cut(s) 205
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 1 cut(s) 75
Tth111I GACNNNGTC 1 cut(s) 217
XapI RAATTY 1 cut(s) 46
XmnI GAANNNNTTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.