Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Forward (+)

4216387 .. 4216908

Gene Structure 522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0058700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGGCGATATTGCTGTTGAAATGGCTGCTTCTAATTCACAGCCATCGGGTAATCAACCTTCTAGGTCGAGATACGATCTGACGTTTAAGCCAGGACGAGACTCGGAAAGTGACATAAGAAATACCATGTTGGTGGTGGCTGCCCTAATTACAGCCGCAACCTTTACAGCAGGCATCAACCCACCTGGCGGAGTTTGGCAAGAAGATAACGTTTCTCGTAAACAGTATTCGGGTAAGTCGATTTTAGGTACTCAAAGCGTTACTACATACCGAGTGTTCTTCTTGTTGAACTCGACAGCTTTTTCATCGGCTACACTTGTAATAAACTACCTTGTGTGGAACTTTCCATATTCTCCGGAGATATGGGGTGCTCTGGGTTGTATGGCGGCAACTGTTAAATATAGAGATTTATGGTATAATTGTCTTGATATGTTCTTCTCCAAACTGGAGGATATATATAGAGGTACAAATTTCCTAGAGCTAAGTGTGAATACAATAAGTCAAGAACTACGGCTACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

173

Amino Acids

19.32

Weight (kDa)

5.79

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGG	PF13962	37 - 114	4.7e-20	Domain of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	355
AciI	CCGC	3 cut(s)	156, 189, 386
AclI	AACGTT	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	469
AfaI	GTAC	2 cut(s)	250, 466
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	20, 289
AjnI	CCWGG	2 cut(s)	91, 184
AluBI	AGCT	2 cut(s)	299, 481
AluI	AGCT	2 cut(s)	299, 481
Alw21I	GWGCWC	1 cut(s)	373
Alw26I	GTCTC	1 cut(s)	93
Aor13HI	TCCGGA	1 cut(s)	355
ApeKI	GCWGC	2 cut(s)	26, 140
ApoI	RAATTY	1 cut(s)	469
BarI	GAAGNNNNNNTAC	2 cut(s)	43, 75
Bbv12I	GWGCWC	1 cut(s)	373
BbvI	GCAGC	2 cut(s)	13, 127
BccI	CCATC	1 cut(s)	52
BciT130I	CCWGG	2 cut(s)	93, 186
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	2 cut(s)	63, 476
BisI	GCNGC	4 cut(s)	27, 141, 156, 387
BlsI	GCNGC	4 cut(s)	28, 142, 157, 388
Bme1390I	CCNGG	2 cut(s)	93, 186
BmrFI	CCNGG	2 cut(s)	93, 186
BmsI	GCATC	1 cut(s)	183
BpmI	CTGGAG	1 cut(s)	467
BsaWI	WCCGGW	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	450
BseAI	TCCGGA	1 cut(s)	355
BseBI	CCWGG	2 cut(s)	93, 186
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseNI	ACTGG	1 cut(s)	450
BseXI	GCAGC	2 cut(s)	13, 127
BsiHKAI	GWGCWC	1 cut(s)	373
BsiSI	CCGG	1 cut(s)	356
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp13I	TCCGGA	1 cut(s)	355
Bsp143I	GATC	1 cut(s)	76
BspACI	CCGC	3 cut(s)	156, 189, 386
BspEI	TCCGGA	1 cut(s)	355
BsrI	ACTGG	1 cut(s)	450
BssMI	GATC	1 cut(s)	76
Bst2UI	CCWGG	2 cut(s)	93, 186
Bst4CI	ACNGT	2 cut(s)	225, 394
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	1 cut(s)	482
BstKTI	GATC	1 cut(s)	79
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	1 cut(s)	76
BstNI	CCWGG	2 cut(s)	93, 186
BstSCI	CCNGG	2 cut(s)	91, 184
BstV1I	GCAGC	2 cut(s)	13, 127
BstXI	CCANNNNNNTGG	1 cut(s)	133
Cac8I	GCNNGC	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	249, 465
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	9 cut(s)	26, 43, 91, 140, 155, 299, 311, 481, 514
CviKI_1	RGCY	9 cut(s)	26, 43, 91, 140, 155, 299, 311, 481, 514
CviQI	GTAC	2 cut(s)	249, 465
DdeI	CTNAG	1 cut(s)	482
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
EciI	GGCGGA	1 cut(s)	204
EcoRII	CCWGG	2 cut(s)	91, 184
FaeI	CATG	1 cut(s)	130
FatI	CATG	1 cut(s)	126
Fnu4HI	GCNGC	4 cut(s)	27, 141, 156, 387
Fsp4HI	GCNGC	4 cut(s)	27, 141, 156, 387
FspBI	CTAG	2 cut(s)	63, 476
GluI	GCNGC	4 cut(s)	27, 141, 156, 387
GsuI	CTGGAG	1 cut(s)	467
HapII	CCGG	1 cut(s)	356
Hin1II	CATG	1 cut(s)	130
HinfI	GANTC	1 cut(s)	101
HpaII	CCGG	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188I	TCNGA	2 cut(s)	81, 106
Hpy188III	TCNNGA	4 cut(s)	69, 356, 425, 503
Hpy8I	GTNNAC	1 cut(s)	221
HpyAV	CCTTC	1 cut(s)	69
HpyCH4III	ACNGT	2 cut(s)	225, 394
HpyCH4IV	ACGT	2 cut(s)	83, 210
HpyF3I	CTNAG	1 cut(s)	482
HpySE526I	ACGT	2 cut(s)	83, 210
Hsp92II	CATG	1 cut(s)	130
Kpn2I	TCCGGA	1 cut(s)	355
Kzo9I	GATC	1 cut(s)	76
LpnPI	CCDG	8 cut(s)	78, 105, 156, 171, 198, 359, 369, 431
Lsp1109I	GCAGC	2 cut(s)	13, 127
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	2 cut(s)	63, 476
MaeII	ACGT	2 cut(s)	83, 210
MaeIII	GTNAC	2 cut(s)	110, 259
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	3 cut(s)	215, 271, 427
MhlI	GDGCHC	1 cut(s)	373
MluCI	AATT	4 cut(s)	34, 147, 418, 469
MlyI	GAGTC	1 cut(s)	95
MnlI	CCTC	2 cut(s)	442, 455
MroI	TCCGGA	1 cut(s)	355
MseI	TTAA	3 cut(s)	87, 396, 520
MslI	CAYNNNNRTG	1 cut(s)	131
MspI	CCGG	1 cut(s)	356
MspR9I	CCNGG	2 cut(s)	93, 186
MvaI	CCWGG	2 cut(s)	93, 186
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	1 cut(s)	236
PkrI	GCNGC	4 cut(s)	28, 142, 157, 388
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
Psp1406I	AACGTT	1 cut(s)	210
Psp6I	CCWGG	2 cut(s)	91, 184
PspGI	CCWGG	2 cut(s)	91, 184
PsrI	GAACNNNNNNTAC	1 cut(s)	498
RsaI	GTAC	2 cut(s)	250, 466
RsaNI	GTAC	2 cut(s)	249, 465
RseI	CAYNNNNRTG	1 cut(s)	131
SaqAI	TTAA	3 cut(s)	87, 396, 520
SatI	GCNGC	4 cut(s)	27, 141, 156, 387
Sau3AI	GATC	1 cut(s)	76
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	93, 186
SduI	GDGCHC	1 cut(s)	373
SfaNI	GCATC	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	131
Sse9I	AATT	4 cut(s)	34, 147, 418, 469
SsiI	CCGC	3 cut(s)	156, 189, 386
SspMI	CTAG	2 cut(s)	63, 476
StyD4I	CCNGG	2 cut(s)	91, 184
TaaI	ACNGT	2 cut(s)	225, 394
TaiI	ACGT	2 cut(s)	86, 213
TaqI	TCGA	3 cut(s)	68, 239, 293
TasI	AATT	4 cut(s)	34, 147, 418, 469
TauI	GCSGC	2 cut(s)	158, 389
Tru1I	TTAA	3 cut(s)	87, 396, 520
Tru9I	TTAA	3 cut(s)	87, 396, 520
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	2 cut(s)	26, 140
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	294
XapI	RAATTY	1 cut(s)	469
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XspI	CTAG	2 cut(s)	63, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.