Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Reverse (-)

30120000 .. 30120710

Gene Structure 711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0279000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGCTTTCTCTGACTCTCGAAAGAGAGGTTGTGCAATGGCGGCTTGTCTCGGCGGGCGACGACATCGTATCTGTGACCGGGAAGGATTTTGTTTTATCTTTCTCACGTCTATACATCGGAGATGACGACGGGCTTGCTCGACGAGGTCTCTTAGTTCCTGTTGTTGTCATGGGTTGTCCTAGCAGTGCGAGAGGCCGAGTGTTCGATCCAGGTTTAGATCGGAGGGGCTTTGAGGACGGCCAAGCTATGAGGGTCGGGTCGGCCTCTGGGTTGACGACATCAAGAGGCTGTGGAAGCGACGGCCTCGGTGATGGTGCTGCAAGTTTGGATCTGGTGATGCTGATCTTGGAGCGCTGCAGATCTAGTCTGTTAATTGATAACGATGGTTTTGGTGGTGATGCGTTTGGCGGGTGGTGTGCGAGATTGGGAGTCTCCAAGCACAATGGGCGGACGGGGTTCACTAGCTTGCGAGGTGCTAGGGCGGCTATTGGTTCTGACGGTGGAGACGGAGCTGCGACTCTGGCTAGGCTTCTTTGGGCTTGGGCCATCATCCCAGAGTGGGAGTCTGTTAGGGTTTCCAAGCTCTGGGTTATGGTGGTGTGGATCTGGTCTGTTAAGGCCCAAAATGGTTTAGGTTTTCACAAGGCTTGGACTATCCCTTTATTTGGGGGTTGGATGGATTGGGCCTCTATGGCCCAGGGTACTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

236

Amino Acids

25.22

Weight (kDa)

6.73

Isoelectric Point (pI)

24.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	585
AciI	CCGC	5 cut(s)	40, 53, 408, 448, 482
AclWI	GGATC	3 cut(s)	200, 336, 611
AcoI	YGGCCR	1 cut(s)	238
AfaI	GTAC	1 cut(s)	703
AfeI	AGCGCT	1 cut(s)	353
AfiI	CCNNNNNNNGG	3 cut(s)	559, 585, 665
AjiI	CACGTC	1 cut(s)	107
AjnI	CCWGG	2 cut(s)	208, 696
AluBI	AGCT	4 cut(s)	245, 465, 512, 583
AluI	AGCT	4 cut(s)	245, 465, 512, 583
Alw26I	GTCTC	4 cut(s)	52, 152, 436, 498
AlwI	GGATC	3 cut(s)	200, 336, 611
Aor51HI	AGCGCT	1 cut(s)	353
AoxI	GGCC	8 cut(s)	193, 238, 261, 301, 543, 618, 684, 693
ApeKI	GCWGC	3 cut(s)	317, 354, 512
AspLEI	GCGC	1 cut(s)	354
AspS9I	GGNCC	4 cut(s)	543, 619, 684, 694
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	3 cut(s)	320, 346, 407
BbvI	GCAGC	3 cut(s)	304, 341, 499
BccI	CCATC	4 cut(s)	305, 377, 554, 670
BceAI	ACGGC	2 cut(s)	253, 316
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciT130I	CCWGG	2 cut(s)	210, 698
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	4 cut(s)	52, 152, 436, 498
BfaI	CTAG	5 cut(s)	180, 363, 462, 477, 525
BfmI	CTRYAG	1 cut(s)	355
BfoI	RGCGCY	1 cut(s)	355
BglI	GCCNNNNNGGC	1 cut(s)	692
BglII	AGATCT	1 cut(s)	359
BisI	GCNGC	5 cut(s)	41, 318, 355, 483, 513
BlsI	GCNGC	5 cut(s)	42, 319, 356, 484, 514
Bme1390I	CCNGG	3 cut(s)	79, 210, 698
BmgBI	CACGTC	1 cut(s)	107
BmgT120I	GGNCC	4 cut(s)	543, 619, 684, 694
BmrFI	CCNGG	3 cut(s)	79, 210, 698
BmsI	GCATC	2 cut(s)	327, 388
BpuMI	CCSGG	1 cut(s)	79
BsaBI	GATNNNNATC	1 cut(s)	341
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	3 cut(s)	304, 696, 697
Bsc4I	CCNNNNNNNGG	3 cut(s)	559, 585, 665
Bse3DI	GCAATG	1 cut(s)	41
Bse8I	GATNNNNATC	1 cut(s)	341
BseBI	CCWGG	2 cut(s)	210, 698
BseDI	CCNNGG	3 cut(s)	304, 696, 697
BseGI	GGATG	2 cut(s)	549, 681
BseJI	GATNNNNATC	1 cut(s)	341
BseLI	CCNNNNNNNGG	3 cut(s)	559, 585, 665
BseMI	GCAATG	1 cut(s)	41
BseXI	GCAGC	3 cut(s)	304, 341, 499
BshFI	GGCC	8 cut(s)	195, 240, 263, 303, 545, 620, 686, 695
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	3 cut(s)	559, 585, 665
BsmAI	GTCTC	4 cut(s)	52, 152, 436, 498
BsmBI	CGTCTC	1 cut(s)	498
BsnI	GGCC	8 cut(s)	195, 240, 263, 303, 545, 620, 686, 695
Bso31I	GGTCTC	1 cut(s)	152
Bsp143I	GATC	6 cut(s)	205, 217, 328, 342, 359, 603
BspACI	CCGC	5 cut(s)	40, 53, 408, 448, 482
BspANI	GGCC	8 cut(s)	195, 240, 263, 303, 545, 620, 686, 695
BspMAI	CTGCAG	1 cut(s)	359
BspPI	GGATC	3 cut(s)	200, 336, 611
BspTNI	GGTCTC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	41
BssECI	CCNNGG	3 cut(s)	304, 696, 697
BssMI	GATC	6 cut(s)	205, 217, 328, 342, 359, 603
Bst2UI	CCWGG	2 cut(s)	210, 698
Bst4CI	ACNGT	2 cut(s)	500, 706
BstC8I	GCNNGC	3 cut(s)	55, 135, 467
BstDEI	CTNAG	1 cut(s)	151
BstF5I	GGATG	2 cut(s)	549, 681
BstH2I	RGCGCY	1 cut(s)	355
BstHHI	GCGC	1 cut(s)	354
BstKTI	GATC	6 cut(s)	208, 220, 331, 345, 362, 606
BstMAI	GTCTC	4 cut(s)	52, 152, 436, 498
BstMBI	GATC	6 cut(s)	205, 217, 328, 342, 359, 603
BstMWI	GCNNNNNNNGC	6 cut(s)	40, 294, 445, 482, 521, 692
BstNI	CCWGG	2 cut(s)	210, 698
BstSCI	CCNGG	3 cut(s)	77, 208, 696
BstSFI	CTRYAG	1 cut(s)	355
BstV1I	GCAGC	3 cut(s)	304, 341, 499
BstX2I	RGATCY	3 cut(s)	328, 359, 603
BstYI	RGATCY	3 cut(s)	328, 359, 603
BsuRI	GGCC	8 cut(s)	195, 240, 263, 303, 545, 620, 686, 695
BtrI	CACGTC	1 cut(s)	107
BtsCI	GGATG	2 cut(s)	549, 681
BtsI	GCAGTG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	190
Cac8I	GCNNGC	3 cut(s)	55, 135, 467
CfoI	GCGC	1 cut(s)	354
Cfr13I	GGNCC	4 cut(s)	543, 619, 684, 694
Csp6I	GTAC	1 cut(s)	702
CviAII	CATG	1 cut(s)	169
CviQI	GTAC	1 cut(s)	702
DdeI	CTNAG	1 cut(s)	151
DpnI	GATC	6 cut(s)	207, 219, 330, 344, 361, 605
DpnII	GATC	6 cut(s)	205, 217, 328, 342, 359, 603
EaeI	YGGCCR	1 cut(s)	238
EciI	GGCGGA	1 cut(s)	463
Eco31I	GGTCTC	1 cut(s)	152
Eco47III	AGCGCT	1 cut(s)	353
EcoRII	CCWGG	2 cut(s)	208, 696
Esp3I	CGTCTC	1 cut(s)	498
FaeI	CATG	1 cut(s)	172
FaiI	YATR	5 cut(s)	112, 170, 248, 593, 692
FatI	CATG	1 cut(s)	168
FauI	CCCGC	2 cut(s)	46, 401
Fnu4HI	GCNGC	5 cut(s)	41, 318, 355, 483, 513
FokI	GGATG	2 cut(s)	536, 688
Fsp4HI	GCNGC	5 cut(s)	41, 318, 355, 483, 513
FspBI	CTAG	5 cut(s)	180, 363, 462, 477, 525
GlaI	GCGC	1 cut(s)	353
GluI	GCNGC	5 cut(s)	41, 318, 355, 483, 513
HaeII	RGCGCY	1 cut(s)	355
HaeIII	GGCC	8 cut(s)	195, 240, 263, 303, 545, 620, 686, 695
HapII	CCGG	1 cut(s)	78
HhaI	GCGC	1 cut(s)	354
Hin1II	CATG	1 cut(s)	172
Hin6I	GCGC	1 cut(s)	352
HinP1I	GCGC	1 cut(s)	352
HincII	GTYRAC	1 cut(s)	273
HindII	GTYRAC	1 cut(s)	273
HinfI	GANTC	4 cut(s)	13, 429, 517, 563
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	3 cut(s)	320, 346, 407
Hpy166II	GTNNAC	2 cut(s)	273, 459
Hpy188I	TCNGA	4 cut(s)	12, 119, 222, 496
Hpy188III	TCNNGA	2 cut(s)	17, 282
Hpy8I	GTNNAC	2 cut(s)	273, 459
Hpy99I	CGWCG	4 cut(s)	62, 131, 144, 302
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	2 cut(s)	500, 706
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	3 cut(s)	34, 320, 357
HpyF10VI	GCNNNNNNNGC	6 cut(s)	40, 294, 445, 482, 521, 692
HpyF3I	CTNAG	1 cut(s)	151
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	1 cut(s)	172
HspAI	GCGC	1 cut(s)	352
Kzo9I	GATC	6 cut(s)	205, 217, 328, 342, 359, 603
LmnI	GCTCC	2 cut(s)	349, 509
Lsp1109I	GCAGC	3 cut(s)	304, 341, 499
LweI	GCATC	2 cut(s)	327, 388
MaeI	CTAG	5 cut(s)	180, 363, 462, 477, 525
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	6 cut(s)	207, 219, 330, 344, 361, 605
MboI	GATC	6 cut(s)	205, 217, 328, 342, 359, 603
MflI	RGATCY	3 cut(s)	328, 359, 603
MluCI	AATT	1 cut(s)	372
MlyI	GAGTC	4 cut(s)	7, 438, 511, 572
MmeI	TCCRAC	1 cut(s)	653
MseI	TTAA	3 cut(s)	371, 615, 709
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	3 cut(s)	79, 210, 698
MvaI	CCWGG	2 cut(s)	210, 698
MwoI	GCNNNNNNNGC	6 cut(s)	40, 294, 445, 482, 521, 692
NciI	CCSGG	1 cut(s)	79
NdeII	GATC	6 cut(s)	205, 217, 328, 342, 359, 603
NlaIII	CATG	1 cut(s)	172
NmeAIII	GCCGAG	2 cut(s)	29, 221
NmuCI	GTSAC	1 cut(s)	73
PasI	CCCWGGG	1 cut(s)	697
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PflFI	GACNNNGTC	1 cut(s)	144
PflMI	CCANNNNNTGG	1 cut(s)	585
PkrI	GCNGC	5 cut(s)	42, 319, 356, 484, 514
PleI	GAGTC	4 cut(s)	7, 437, 511, 571
PpsI	GAGTC	4 cut(s)	7, 437, 511, 571
Psp6I	CCWGG	2 cut(s)	208, 696
PspGI	CCWGG	2 cut(s)	208, 696
PspPI	GGNCC	4 cut(s)	543, 619, 684, 694
PstI	CTGCAG	1 cut(s)	359
PsuI	RGATCY	3 cut(s)	328, 359, 603
PsyI	GACNNNGTC	1 cut(s)	144
RsaI	GTAC	1 cut(s)	703
RsaNI	GTAC	1 cut(s)	702
SaqAI	TTAA	3 cut(s)	371, 615, 709
SatI	GCNGC	5 cut(s)	41, 318, 355, 483, 513
Sau3AI	GATC	6 cut(s)	205, 217, 328, 342, 359, 603
Sau96I	GGNCC	4 cut(s)	543, 619, 684, 694
SchI	GAGTC	4 cut(s)	7, 438, 511, 572
ScrFI	CCNGG	3 cut(s)	79, 210, 698
SfaNI	GCATC	2 cut(s)	327, 388
SfcI	CTRYAG	1 cut(s)	355
SfiI	GGCCNNNNNGGCC	1 cut(s)	692
Sse9I	AATT	1 cut(s)	372
SsiI	CCGC	5 cut(s)	40, 53, 408, 448, 482
SspMI	CTAG	5 cut(s)	180, 363, 462, 477, 525
StyD4I	CCNGG	3 cut(s)	77, 208, 696
TaaI	ACNGT	2 cut(s)	500, 706
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	3 cut(s)	18, 139, 204
TasI	AATT	1 cut(s)	372
TauI	GCSGC	2 cut(s)	43, 485
Tru1I	TTAA	3 cut(s)	371, 615, 709
Tru9I	TTAA	3 cut(s)	371, 615, 709
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	3 cut(s)	317, 354, 512
Tsp45I	GTSAC	1 cut(s)	73
TspGWI	ACGGA	1 cut(s)	522
TspRI	CASTG	1 cut(s)	190
Tth111I	GACNNNGTC	1 cut(s)	144
Van91I	CCANNNNNTGG	1 cut(s)	585
XspI	CTAG	5 cut(s)	180, 363, 462, 477, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.