Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Reverse (-)

9973061 .. 9983773

Gene Structure 10713 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1073000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGCAGGTGCAGGGAGAGAGCTCGCCCGCGGATTTGTGGAAGATGCTTCAAGCTTGGAAGCCACTGAGTCTGAACATTCTCCCGAAAACACTCCGCCTTTCCTCTTCTTCTCCCACTCGCCTTCCAATCAAATCCTTCTCCTGCAAAATGTCGTCCGACTCGCCGCCCTTAACTCACTCCATCACTCTCCCGAGTCAACTCGCCGAACCCGTCCAGATCGTTGCCGCCCCCAACATCTCCCCTTCCGAGTTCAGGAGCGCCATCGATTCGTCTTTGTTCAAACAATGGCTGAAGAACATGGAAAGTGAAAGTGGGGTTTTAAGTGGCGGTGGCTTGTTTCTTAAACGAGTTTTAATTCAGGGTGTTGATATGTTCGAAAAGCGAATCGGGTTTTTGAAATTTGTAGCAGATGTGATTGATAAAGAAACTGGGGAAAAGGTTCCAGGTATTGTGTTTGCACGAGGACCGGCTGTAGCCGTGCTAATCCTTTTGGACTCAGAGGGCAAGACCTATGCTGTTCTTACTGAACAGGTTAGAATCCCGGTTGGAAGGATCATATTGGAATTGCCTGCTGGAATGTTGGATGATGACAAGGGTGATTTTCTCGGCACTGCAATCCGTGAGGTTGAAGAGGAGACTGGTATATGCCTAACACAAAAAGATATGGTGGACCTCACAGCCTTCCTCGACGAATCTACTGGACGCAGAATTTTTCCTTCACCAGGAGGGTGCGATGAAGAAATAAGCCTATTTTTGTATAGAGGGCCGGTGGATAAAGGGATTATTGAGCAGCTGCAAGGGAAAGAAACAGGTCTTCGTGAACATGGCGAGCTGATTAAGCTCCGCGTGGTTCCGTATGAAAAGCTCTGGTGCACAACAGCTGATGCAAAGGTTTTAGCAGCCCTTACGCTTTATGAAAGGGCCAAAAGAGAAGGGCTCTTGCCTCCGCCAGAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

320

Amino Acids

35.01

Weight (kDa)

5.28

Isoelectric Point (pI)

59.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	154 - 290	3.5e-14	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	29, 846
AciI	CCGC	8 cut(s)	27, 29, 94, 164, 225, 327, 844, 947
AclWI	GGATC	1 cut(s)	560
AcsI	RAATTY	2 cut(s)	398, 708
AcuI	CTGAAG	1 cut(s)	311
AfiI	CCNNNNNNNGG	2 cut(s)	252, 722
AgsI	TTSAA	4 cut(s)	50, 280, 397, 629
AjnI	CCWGG	2 cut(s)	442, 721
AluBI	AGCT	7 cut(s)	21, 53, 793, 832, 841, 865, 881
AluI	AGCT	7 cut(s)	21, 53, 793, 832, 841, 865, 881
Alw21I	GWGCWC	2 cut(s)	23, 875
Alw26I	GTCTC	1 cut(s)	629
Alw44I	GTGCAC	1 cut(s)	871
AlwI	GGATC	1 cut(s)	560
Ama87I	CYCGRG	1 cut(s)	190
AoxI	GGCC	2 cut(s)	764, 921
ApaLI	GTGCAC	1 cut(s)	871
ApeKI	GCWGC	3 cut(s)	790, 793, 899
ApoI	RAATTY	2 cut(s)	398, 708
Asp700I	GAANNNNTTC	1 cut(s)	438
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	4 cut(s)	464, 670, 764, 921
AsuC2I	CCSGG	1 cut(s)	542
AsuHPI	GGTGA	2 cut(s)	608, 711
AsuII	TTCGAA	1 cut(s)	375
AvaI	CYCGRG	1 cut(s)	190
AvaII	GGWCC	2 cut(s)	464, 670
BaeGI	GKGCMC	1 cut(s)	875
BanII	GRGCYC	2 cut(s)	23, 939
BauI	CACGAG	1 cut(s)	459
BbsI	GAAGAC	1 cut(s)	806
Bbv12I	GWGCWC	2 cut(s)	23, 875
BbvI	GCAGC	3 cut(s)	780, 802, 911
BccI	CCATC	2 cut(s)	188, 269
BceAI	ACGGC	1 cut(s)	461
BciT130I	CCWGG	2 cut(s)	444, 723
BcnI	CCSGG	1 cut(s)	542
BcoDI	GTCTC	1 cut(s)	629
BfmI	CTRYAG	1 cut(s)	471
BfoI	RGCGCY	1 cut(s)	261
BisI	GCNGC	5 cut(s)	164, 225, 791, 794, 900
BlsI	GCNGC	5 cut(s)	165, 226, 792, 795, 901
Bme1390I	CCNGG	3 cut(s)	444, 542, 723
Bme18I	GGWCC	2 cut(s)	464, 670
BmeT110I	CYCGRG	1 cut(s)	190
BmgT120I	GGNCC	4 cut(s)	464, 670, 764, 921
BmiI	GGNNCC	2 cut(s)	441, 852
BmrFI	CCNGG	3 cut(s)	444, 542, 723
BmrI	ACTGGG	1 cut(s)	438
BmsI	GCATC	2 cut(s)	33, 874
BmuI	ACTGGG	1 cut(s)	438
BpiI	GAAGAC	1 cut(s)	806
BplI	GAGNNNNNCTC	2 cut(s)	921, 953
Bpu14I	TTCGAA	1 cut(s)	375
BpuMI	CCSGG	1 cut(s)	542
Bsa29I	ATCGAT	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	252, 722
Bse118I	RCCGGY	2 cut(s)	466, 766
Bse1I	ACTGG	3 cut(s)	433, 643, 703
BseBI	CCWGG	2 cut(s)	444, 723
BseCI	ATCGAT	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	589
BseLI	CCNNNNNNNGG	2 cut(s)	252, 722
BseMII	CTCAG	2 cut(s)	56, 510
BseNI	ACTGG	3 cut(s)	433, 643, 703
BseRI	GAGGAG	1 cut(s)	647
BseSI	GKGCMC	1 cut(s)	875
BseXI	GCAGC	3 cut(s)	780, 802, 911
BsgI	GTGCAG	1 cut(s)	29
Bsh1236I	CGCG	2 cut(s)	29, 846
BshFI	GGCC	2 cut(s)	766, 923
BshVI	ATCGAT	1 cut(s)	264
BsiHKAI	GWGCWC	2 cut(s)	23, 875
BsiHKCI	CYCGRG	1 cut(s)	190
BsiSI	CCGG	3 cut(s)	467, 542, 767
BslI	CCNNNNNNNGG	2 cut(s)	252, 722
BsmAI	GTCTC	1 cut(s)	629
BsnI	GGCC	2 cut(s)	766, 923
BsoBI	CYCGRG	1 cut(s)	190
Bsp119I	TTCGAA	1 cut(s)	375
Bsp1286I	GDGCHC	3 cut(s)	23, 875, 939
Bsp143I	GATC	2 cut(s)	216, 552
BspACI	CCGC	8 cut(s)	27, 29, 94, 164, 225, 327, 844, 947
BspANI	GGCC	2 cut(s)	766, 923
BspCNI	CTCAG	2 cut(s)	57, 509
BspDI	ATCGAT	1 cut(s)	264
BspFNI	CGCG	2 cut(s)	29, 846
BspLI	GGNNCC	2 cut(s)	441, 852
BspPI	GGATC	1 cut(s)	560
BspT104I	TTCGAA	1 cut(s)	375
BsrFI	RCCGGY	2 cut(s)	466, 766
BsrI	ACTGG	3 cut(s)	433, 643, 703
BssAI	RCCGGY	2 cut(s)	466, 766
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	2 cut(s)	216, 552
BssSI	CACGAG	1 cut(s)	459
Bst2BI	CACGAG	1 cut(s)	459
Bst2UI	CCWGG	2 cut(s)	444, 723
Bst6I	CTCTTC	2 cut(s)	109, 624
BstBI	TTCGAA	1 cut(s)	375
BstC8I	GCNNGC	4 cut(s)	23, 27, 570, 830
BstDEI	CTNAG	2 cut(s)	65, 496
BstDSI	CCRYGG	1 cut(s)	27
BstENI	CCTNNNNNAGG	1 cut(s)	720
BstF5I	GGATG	1 cut(s)	589
BstFNI	CGCG	2 cut(s)	29, 846
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	2 cut(s)	219, 555
BstMAI	GTCTC	1 cut(s)	629
BstMBI	GATC	2 cut(s)	216, 552
BstMWI	GCNNNNNNNGC	1 cut(s)	838
BstNI	CCWGG	2 cut(s)	444, 723
BstSCI	CCNGG	3 cut(s)	442, 540, 721
BstSFI	CTRYAG	1 cut(s)	471
BstSLI	GKGCMC	1 cut(s)	875
BstUI	CGCG	2 cut(s)	29, 846
BstV1I	GCAGC	3 cut(s)	780, 802, 911
BstV2I	GAAGAC	1 cut(s)	806
Bsu15I	ATCGAT	1 cut(s)	264
BsuRI	GGCC	2 cut(s)	766, 923
BsuTUI	ATCGAT	1 cut(s)	264
BtgI	CCRYGG	1 cut(s)	27
BtgZI	GCGATG	1 cut(s)	747
BtsCI	GGATG	1 cut(s)	589
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	2 cut(s)	62, 609
Cac8I	GCNNGC	4 cut(s)	23, 27, 570, 830
CfoI	GCGC	1 cut(s)	260
Cfr10I	RCCGGY	2 cut(s)	466, 766
Cfr13I	GGNCC	4 cut(s)	464, 670, 764, 921
Cfr42I	CCGCGG	1 cut(s)	30
ClaI	ATCGAT	1 cut(s)	264
CseI	GACGC	1 cut(s)	711
CviAII	CATG	2 cut(s)	298, 824
DdeI	CTNAG	2 cut(s)	65, 496
DpnI	GATC	2 cut(s)	218, 554
DpnII	GATC	2 cut(s)	216, 552
Eam1104I	CTCTTC	2 cut(s)	109, 624
EarI	CTCTTC	2 cut(s)	109, 624
EciI	GGCGGA	2 cut(s)	83, 936
Ecl136II	GAGCTC	1 cut(s)	21
Eco24I	GRGCYC	2 cut(s)	23, 939
Eco47I	GGWCC	2 cut(s)	464, 670
Eco53kI	GAGCTC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	311
Eco88I	CYCGRG	1 cut(s)	190
EcoICRI	GAGCTC	1 cut(s)	21
EcoNI	CCTNNNNNAGG	1 cut(s)	720
EcoRII	CCWGG	2 cut(s)	442, 721
EcoT38I	GRGCYC	2 cut(s)	23, 939
FaeI	CATG	2 cut(s)	301, 827
FatI	CATG	2 cut(s)	297, 823
FauI	CCCGC	1 cut(s)	34
Fnu4HI	GCNGC	5 cut(s)	164, 225, 791, 794, 900
FokI	GGATG	1 cut(s)	596
FriOI	GRGCYC	2 cut(s)	23, 939
Fsp4HI	GCNGC	5 cut(s)	164, 225, 791, 794, 900
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	5 cut(s)	164, 225, 791, 794, 900
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	2 cut(s)	766, 923
HapII	CCGG	3 cut(s)	467, 542, 767
HgaI	GACGC	1 cut(s)	711
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	2 cut(s)	301, 827
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HincII	GTYRAC	1 cut(s)	197
HindII	GTYRAC	1 cut(s)	197
HindIII	AAGCTT	1 cut(s)	51
HinfI	GANTC	8 cut(s)	67, 158, 193, 266, 384, 494, 537, 692
HpaII	CCGG	3 cut(s)	467, 542, 767
HphI	GGTGA	2 cut(s)	608, 711
Hpy166II	GTNNAC	4 cut(s)	197, 670, 821, 873
Hpy188I	TCNGA	4 cut(s)	72, 157, 247, 499
Hpy188III	TCNNGA	5 cut(s)	82, 190, 214, 253, 818
Hpy8I	GTNNAC	4 cut(s)	197, 670, 821, 873
Hpy99I	CGWCG	1 cut(s)	692
HpyAV	CCTTC	7 cut(s)	131, 145, 252, 543, 691, 726, 926
HpyCH4V	TGCA	8 cut(s)	4, 10, 144, 458, 614, 796, 873, 887
HpyF10VI	GCNNNNNNNGC	1 cut(s)	838
HpyF3I	CTNAG	2 cut(s)	65, 496
Hsp92II	CATG	2 cut(s)	301, 827
HspAI	GCGC	1 cut(s)	258
KspI	CCGCGG	1 cut(s)	30
Kzo9I	GATC	2 cut(s)	216, 552
LmnI	GCTCC	2 cut(s)	255, 846
Lsp1109I	GCAGC	3 cut(s)	780, 802, 911
LweI	GCATC	2 cut(s)	33, 874
MalI	GATC	2 cut(s)	218, 554
MboI	GATC	2 cut(s)	216, 552
MboII	GAAGA	7 cut(s)	52, 96, 99, 304, 641, 749, 806
MhlI	GDGCHC	3 cut(s)	23, 875, 939
MluCI	AATT	4 cut(s)	354, 398, 563, 708
MlyI	GAGTC	4 cut(s)	76, 152, 202, 488
MmeI	TCCRAC	3 cut(s)	180, 526, 561
MroXI	GAANNNNTTC	1 cut(s)	438
MseI	TTAA	5 cut(s)	170, 320, 342, 353, 837
MspA1I	CMGCKG	3 cut(s)	29, 793, 881
MspI	CCGG	3 cut(s)	467, 542, 767
MspR9I	CCNGG	3 cut(s)	444, 542, 723
MvaI	CCWGG	2 cut(s)	444, 723
MvnI	CGCG	2 cut(s)	29, 846
MwoI	GCNNNNNNNGC	1 cut(s)	838
NciI	CCSGG	1 cut(s)	542
NdeII	GATC	2 cut(s)	216, 552
NlaIII	CATG	2 cut(s)	301, 827
NlaIV	GGNNCC	2 cut(s)	441, 852
NmeAIII	GCCGAG	1 cut(s)	585
NspV	TTCGAA	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	4 cut(s)	266, 384, 537, 692
PkrI	GCNGC	5 cut(s)	165, 226, 792, 795, 901
PleI	GAGTC	4 cut(s)	75, 152, 201, 488
PpsI	GAGTC	4 cut(s)	75, 152, 201, 488
Psp124BI	GAGCTC	1 cut(s)	23
Psp6I	CCWGG	2 cut(s)	442, 721
PspGI	CCWGG	2 cut(s)	442, 721
PspN4I	GGNNCC	2 cut(s)	441, 852
PspPI	GGNCC	4 cut(s)	464, 670, 764, 921
PvuII	CAGCTG	2 cut(s)	793, 881
SacI	GAGCTC	1 cut(s)	23
SacII	CCGCGG	1 cut(s)	30
SaqAI	TTAA	5 cut(s)	170, 320, 342, 353, 837
SatI	GCNGC	5 cut(s)	164, 225, 791, 794, 900
Sau3AI	GATC	2 cut(s)	216, 552
Sau96I	GGNCC	4 cut(s)	464, 670, 764, 921
SchI	GAGTC	4 cut(s)	76, 152, 202, 488
ScrFI	CCNGG	3 cut(s)	444, 542, 723
SduI	GDGCHC	3 cut(s)	23, 875, 939
SfaNI	GCATC	2 cut(s)	33, 874
SfcI	CTRYAG	1 cut(s)	471
Sfr303I	CCGCGG	1 cut(s)	30
SfuI	TTCGAA	1 cut(s)	375
SgrBI	CCGCGG	1 cut(s)	30
SinI	GGWCC	2 cut(s)	464, 670
Sse9I	AATT	4 cut(s)	354, 398, 563, 708
SsiI	CCGC	8 cut(s)	27, 29, 94, 164, 225, 327, 844, 947
SstI	GAGCTC	1 cut(s)	23
StyD4I	CCNGG	3 cut(s)	442, 540, 721
TaqI	TCGA	3 cut(s)	264, 375, 687
TasI	AATT	4 cut(s)	354, 398, 563, 708
TauI	GCSGC	2 cut(s)	166, 227
TfiI	GAWTC	4 cut(s)	266, 384, 537, 692
Tru1I	TTAA	5 cut(s)	170, 320, 342, 353, 837
Tru9I	TTAA	5 cut(s)	170, 320, 342, 353, 837
TscAI	CASTG	2 cut(s)	69, 616
TseI	GCWGC	3 cut(s)	790, 793, 899
TspDTI	ATGAA	3 cut(s)	750, 873, 930
TspGWI	ACGGA	2 cut(s)	608, 843
TspRI	CASTG	2 cut(s)	69, 616
VneI	GTGCAC	1 cut(s)	871
VpaK11BI	GGWCC	2 cut(s)	464, 670
XagI	CCTNNNNNAGG	1 cut(s)	720
XapI	RAATTY	2 cut(s)	398, 708
XmnI	GAANNNNTTC	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.