Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Forward (+)

9708196 .. 9711080

Gene Structure 2885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G084800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGACACGTTTTCTTCAAGCTTCAGTGCCTCTGAGTCTGAGCTCTCTGTCCAAAAGACTCAGCCTTTCTTCTTCCACTCGCCTTCAACTTCGATCCTTCTGCTGCAAAATGTCGTCTGACTCGCCACCCTTAACTCACTCTATCACTCTCCCGAGTCAACTCACCGAACCCGTCGAGATCGTCGCTGCCCCCAATATCTCCCATTCCGAGTTCAGGAGTGCTATCGATTCGTCTTTGTTCAAGCAGTGGCTGAAGAACATGGAAAGTGAAAATGGGGTTTTGTACGGCGGTGCATTGTCTCTTAGACGAGTTCTAATTCAGGGTGTGGATATGTTCGGAAAGCGCATTGGGTTTTTGAAATTTGTTGCAGATGTGTTTGATAAAGAAACTGGGAAAAAGGTTCCAGGTATTGTGTTTGCACGAGGACCGGCTGTAGCTGTGCTTATTCTTTTGGACTCGGAGGACAAGACCTATGCTGTTCTTACTGAACAGGTTAGAATCCCTGTCGGAAGGGTCATACTGGAGTTGCCCGCTGGAATGTTGGACGACGACAAGGGCAATTTTCTCGGCACTGCTATTCGTGAGGTTGAAGAGGAAACTGGCATATGCCTAAAACAAGAAGACATGGTGGACCTCACAGCATTCCTCGACCAATCTACTGGAGGCAGAATTTTTCCTTCCCCAGGAGGGTGCGATGAAGAAATCAGTCTCTTTTTGTACAGAGGGCAGGTGAATAAAGAGATTATTGAGCAGCTGCAAGGAAAAGAGACAGGTCTTCGAGAACACGGGGAGCTGATTAAGGTTTGTGTGGTTCCCTATGAAAAGCTCTGGTGCATGACAGCCGATGCAAAGGTTTTAGCAGCCATTGCGCTCTATGAAATGGCAAAAAAAGAAGGGCTCTTGCCTCACTTGAAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

307

Amino Acids

33.66

Weight (kDa)

5.73

Isoelectric Point (pI)

54.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	718
Acc36I	ACCTGC	1 cut(s)	718
AciI	CCGC	2 cut(s)	288, 531
AclWI	GGATC	1 cut(s)	87
AcsI	RAATTY	2 cut(s)	359, 669
AcuI	CTGAAG	2 cut(s)	6, 272
AfaI	GTAC	2 cut(s)	284, 719
AfiI	CCNNNNNNNGG	3 cut(s)	213, 683, 687
AflIII	ACRYGT	1 cut(s)	5
AgsI	TTSAA	6 cut(s)	17, 86, 241, 358, 590, 913
AjnI	CCWGG	2 cut(s)	403, 682
AluBI	AGCT	6 cut(s)	20, 42, 437, 754, 793, 826
AluI	AGCT	6 cut(s)	20, 42, 437, 754, 793, 826
Alw21I	GWGCWC	1 cut(s)	44
Alw26I	GTCTC	3 cut(s)	303, 713, 761
AlwI	GGATC	1 cut(s)	87
AlwNI	CAGNNNCTG	1 cut(s)	250
Ama87I	CYCGRG	1 cut(s)	151
ApeKI	GCWGC	5 cut(s)	102, 185, 751, 754, 860
ApoI	RAATTY	2 cut(s)	359, 669
AspLEI	GCGC	2 cut(s)	345, 871
AspS9I	GGNCC	2 cut(s)	425, 631
AsuHPI	GGTGA	2 cut(s)	154, 742
AvaI	CYCGRG	1 cut(s)	151
AvaII	GGWCC	2 cut(s)	425, 631
BanII	GRGCYC	2 cut(s)	44, 900
BauI	CACGAG	1 cut(s)	420
BbsI	GAAGAC	2 cut(s)	627, 767
Bbv12I	GWGCWC	1 cut(s)	44
BbvI	GCAGC	5 cut(s)	89, 172, 741, 763, 872
BceAI	ACGGC	1 cut(s)	301
BcgI	CGANNNNNNTGC	4 cut(s)	81, 115, 547, 581
BciT130I	CCWGG	2 cut(s)	405, 684
BcoDI	GTCTC	3 cut(s)	303, 713, 761
BfmI	CTRYAG	1 cut(s)	432
BfuAI	ACCTGC	1 cut(s)	718
BisI	GCNGC	5 cut(s)	103, 186, 752, 755, 861
BlsI	GCNGC	5 cut(s)	104, 187, 753, 756, 862
Bme1390I	CCNGG	2 cut(s)	405, 684
Bme18I	GGWCC	2 cut(s)	425, 631
BmeT110I	CYCGRG	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	425, 631
BmiI	GGNNCC	2 cut(s)	402, 813
BmrFI	CCNGG	2 cut(s)	405, 684
BmrI	ACTGGG	1 cut(s)	399
BmsI	GCATC	1 cut(s)	835
BmuI	ACTGGG	1 cut(s)	399
BpiI	GAAGAC	2 cut(s)	627, 767
BpmI	CTGGAG	2 cut(s)	542, 681
Bsa29I	ATCGAT	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	682
Bsc4I	CCNNNNNNNGG	3 cut(s)	213, 683, 687
Bse118I	RCCGGY	1 cut(s)	427
Bse1I	ACTGG	4 cut(s)	394, 525, 604, 664
Bse3DI	GCAATG	1 cut(s)	864
BseBI	CCWGG	2 cut(s)	405, 684
BseCI	ATCGAT	1 cut(s)	225
BseDI	CCNNGG	1 cut(s)	682
BseLI	CCNNNNNNNGG	3 cut(s)	213, 683, 687
BseMI	GCAATG	1 cut(s)	864
BseMII	CTCAG	3 cut(s)	23, 29, 73
BseNI	ACTGG	4 cut(s)	394, 525, 604, 664
BseXI	GCAGC	5 cut(s)	89, 172, 741, 763, 872
BshVI	ATCGAT	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	44
BsiHKCI	CYCGRG	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	428
BslI	CCNNNNNNNGG	3 cut(s)	213, 683, 687
BsmAI	GTCTC	3 cut(s)	303, 713, 761
BsmI	GAATGC	1 cut(s)	641
BsoBI	CYCGRG	1 cut(s)	151
Bsp1286I	GDGCHC	2 cut(s)	44, 900
Bsp1407I	TGTACA	1 cut(s)	717
Bsp143I	GATC	2 cut(s)	92, 177
BspACI	CCGC	2 cut(s)	288, 531
BspCNI	CTCAG	3 cut(s)	24, 30, 72
BspDI	ATCGAT	1 cut(s)	225
BspLI	GGNNCC	2 cut(s)	402, 813
BspMI	ACCTGC	1 cut(s)	718
BspPI	GGATC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	864
BsrFI	RCCGGY	1 cut(s)	427
BsrGI	TGTACA	1 cut(s)	717
BsrI	ACTGG	4 cut(s)	394, 525, 604, 664
BssAI	RCCGGY	1 cut(s)	427
BssECI	CCNNGG	1 cut(s)	682
BssMI	GATC	2 cut(s)	92, 177
BssSI	CACGAG	1 cut(s)	420
Bst2BI	CACGAG	1 cut(s)	420
Bst2UI	CCWGG	2 cut(s)	405, 684
Bst6I	CTCTTC	1 cut(s)	585
BstAPI	GCANNNNNTGC	1 cut(s)	866
BstAUI	TGTACA	1 cut(s)	717
BstC8I	GCNNGC	1 cut(s)	531
BstDEI	CTNAG	4 cut(s)	32, 38, 59, 302
BstENI	CCTNNNNNAGG	1 cut(s)	681
BstHHI	GCGC	2 cut(s)	345, 871
BstKTI	GATC	2 cut(s)	95, 180
BstMAI	GTCTC	3 cut(s)	303, 713, 761
BstMBI	GATC	2 cut(s)	92, 177
BstMWI	GCNNNNNNNGC	1 cut(s)	866
BstNI	CCWGG	2 cut(s)	405, 684
BstSCI	CCNGG	2 cut(s)	403, 682
BstSFI	CTRYAG	1 cut(s)	432
BstV1I	GCAGC	5 cut(s)	89, 172, 741, 763, 872
BstV2I	GAAGAC	2 cut(s)	627, 767
BstXI	CCANNNNNNTGG	1 cut(s)	659
Bsu15I	ATCGAT	1 cut(s)	225
BsuTUI	ATCGAT	1 cut(s)	225
BtgZI	GCGATG	1 cut(s)	708
BtsI	GCAGTG	2 cut(s)	251, 570
BtsIMutI	CAGTG	3 cut(s)	30, 251, 570
BveI	ACCTGC	1 cut(s)	718
Cac8I	GCNNGC	1 cut(s)	531
CaiI	CAGNNNCTG	1 cut(s)	250
CfoI	GCGC	2 cut(s)	345, 871
Cfr10I	RCCGGY	1 cut(s)	427
Cfr13I	GGNCC	2 cut(s)	425, 631
ClaI	ATCGAT	1 cut(s)	225
Csp6I	GTAC	2 cut(s)	283, 718
CviAII	CATG	4 cut(s)	259, 625, 835, 918
CviQI	GTAC	2 cut(s)	283, 718
DdeI	CTNAG	4 cut(s)	32, 38, 59, 302
DpnI	GATC	2 cut(s)	94, 179
DpnII	GATC	2 cut(s)	92, 177
Eam1104I	CTCTTC	1 cut(s)	585
EarI	CTCTTC	1 cut(s)	585
Ecl136II	GAGCTC	1 cut(s)	42
Eco24I	GRGCYC	2 cut(s)	44, 900
Eco47I	GGWCC	2 cut(s)	425, 631
Eco53kI	GAGCTC	1 cut(s)	42
Eco57I	CTGAAG	2 cut(s)	6, 272
Eco88I	CYCGRG	1 cut(s)	151
EcoICRI	GAGCTC	1 cut(s)	42
EcoNI	CCTNNNNNAGG	1 cut(s)	681
EcoRII	CCWGG	2 cut(s)	403, 682
EcoT38I	GRGCYC	2 cut(s)	44, 900
FaeI	CATG	4 cut(s)	262, 628, 838, 921
FatI	CATG	4 cut(s)	258, 624, 834, 917
FauI	CCCGC	1 cut(s)	538
FauNDI	CATATG	1 cut(s)	605
Fnu4HI	GCNGC	5 cut(s)	103, 186, 752, 755, 861
FriOI	GRGCYC	2 cut(s)	44, 900
Fsp4HI	GCNGC	5 cut(s)	103, 186, 752, 755, 861
GlaI	GCGC	2 cut(s)	344, 870
GluI	GCNGC	5 cut(s)	103, 186, 752, 755, 861
GsuI	CTGGAG	2 cut(s)	542, 681
HapII	CCGG	1 cut(s)	428
HhaI	GCGC	2 cut(s)	345, 871
Hin1II	CATG	4 cut(s)	262, 628, 838, 921
Hin6I	GCGC	2 cut(s)	343, 869
HinP1I	GCGC	2 cut(s)	343, 869
HincII	GTYRAC	1 cut(s)	158
HindII	GTYRAC	1 cut(s)	158
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	7 cut(s)	34, 57, 119, 154, 227, 455, 498
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	2 cut(s)	154, 742
Hpy166II	GTNNAC	2 cut(s)	158, 631
Hpy188I	TCNGA	7 cut(s)	33, 39, 118, 208, 338, 460, 509
Hpy188III	TCNNGA	5 cut(s)	151, 175, 214, 581, 779
Hpy8I	GTNNAC	2 cut(s)	158, 631
Hpy99I	CGWCG	3 cut(s)	176, 185, 551
HpyAV	CCTTC	5 cut(s)	92, 106, 504, 687, 887
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	7 cut(s)	105, 293, 368, 419, 757, 834, 848
HpyF10VI	GCNNNNNNNGC	1 cut(s)	866
HpyF3I	CTNAG	4 cut(s)	32, 38, 59, 302
HpySE526I	ACGT	1 cut(s)	7
Hsp92II	CATG	4 cut(s)	262, 628, 838, 921
HspAI	GCGC	2 cut(s)	343, 869
Kzo9I	GATC	2 cut(s)	92, 177
LmnI	GCTCC	1 cut(s)	790
Lsp1109I	GCAGC	5 cut(s)	89, 172, 741, 763, 872
LweI	GCATC	1 cut(s)	835
MaeII	ACGT	1 cut(s)	7
MalI	GATC	2 cut(s)	94, 179
MboI	GATC	2 cut(s)	92, 177
MboII	GAAGA	8 cut(s)	5, 60, 63, 265, 602, 632, 710, 767
MhlI	GDGCHC	2 cut(s)	44, 900
MluCI	AATT	4 cut(s)	315, 359, 559, 669
MlyI	GAGTC	5 cut(s)	43, 51, 113, 163, 449
MmeI	TCCRAC	2 cut(s)	487, 522
MseI	TTAA	2 cut(s)	131, 798
MspA1I	CMGCKG	2 cut(s)	533, 754
MspI	CCGG	1 cut(s)	428
MspR9I	CCNGG	2 cut(s)	405, 684
Mva1269I	GAATGC	1 cut(s)	641
MvaI	CCWGG	2 cut(s)	405, 684
MwoI	GCNNNNNNNGC	1 cut(s)	866
NdeI	CATATG	1 cut(s)	605
NdeII	GATC	2 cut(s)	92, 177
NlaIII	CATG	4 cut(s)	262, 628, 838, 921
NlaIV	GGNNCC	2 cut(s)	402, 813
NmeAIII	GCCGAG	1 cut(s)	546
PaqCI	CACCTGC	1 cut(s)	718
PctI	GAATGC	1 cut(s)	641
PfeI	GAWTC	2 cut(s)	227, 498
PkrI	GCNGC	5 cut(s)	104, 187, 753, 756, 862
PleI	GAGTC	5 cut(s)	42, 51, 113, 162, 449
PpsI	GAGTC	5 cut(s)	42, 51, 113, 162, 449
Psp124BI	GAGCTC	1 cut(s)	44
Psp6I	CCWGG	2 cut(s)	403, 682
PspGI	CCWGG	2 cut(s)	403, 682
PspN4I	GGNNCC	2 cut(s)	402, 813
PspPI	GGNCC	2 cut(s)	425, 631
PstNI	CAGNNNCTG	1 cut(s)	250
PvuII	CAGCTG	1 cut(s)	754
RsaI	GTAC	2 cut(s)	284, 719
RsaNI	GTAC	2 cut(s)	283, 718
SacI	GAGCTC	1 cut(s)	44
SaqAI	TTAA	2 cut(s)	131, 798
SatI	GCNGC	5 cut(s)	103, 186, 752, 755, 861
Sau3AI	GATC	2 cut(s)	92, 177
Sau96I	GGNCC	2 cut(s)	425, 631
SchI	GAGTC	5 cut(s)	43, 51, 113, 163, 449
ScrFI	CCNGG	2 cut(s)	405, 684
SduI	GDGCHC	2 cut(s)	44, 900
SfaNI	GCATC	1 cut(s)	835
SfcI	CTRYAG	1 cut(s)	432
SinI	GGWCC	2 cut(s)	425, 631
Sse9I	AATT	4 cut(s)	315, 359, 559, 669
SsiI	CCGC	2 cut(s)	288, 531
SstI	GAGCTC	1 cut(s)	44
StyD4I	CCNGG	2 cut(s)	403, 682
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	5 cut(s)	91, 174, 225, 648, 778
TasI	AATT	4 cut(s)	315, 359, 559, 669
TatI	WGTACW	1 cut(s)	717
TfiI	GAWTC	2 cut(s)	227, 498
Tru1I	TTAA	2 cut(s)	131, 798
Tru9I	TTAA	2 cut(s)	131, 798
TscAI	CASTG	3 cut(s)	30, 251, 577
TseI	GCWGC	5 cut(s)	102, 185, 751, 754, 860
TspDTI	ATGAA	3 cut(s)	711, 834, 891
TspRI	CASTG	3 cut(s)	30, 251, 577
VpaK11BI	GGWCC	2 cut(s)	425, 631
XagI	CCTNNNNNAGG	1 cut(s)	681
XapI	RAATTY	2 cut(s)	359, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.