Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTCCGAGCACTCAAAACGACTCCGCCTTTCGTCTAGTCCCGCTGAGGTTGGATCCTTCAGCTGCAAAATGTCGTCTGACTCGTCACCACCGTTAACTCACTCCATTACTCTGTCCTGTCAACCCGCCCAACCCGTCCAGATAATCGCTGCCCCCATATCTCCGATCCCGATTTCAGGCGAGAGTGCTATCGATTCTTCCTTGTTTCAGCAGTGGCTGAAGAACACCCAGAGTGAAAATGGGTTTTTACACGGCGGTTCCATGTCTCTTACACGAGTTTTAATTCAGGGAGTGGATATGTTCGGGAAGCACATCGGTTTTCTGAAATTTCAAGCAGATGTATTCGATAAACAAACAGGGATAAAGGTTCCAGGTATTGTGTTTGCACGAGGACCAGCTGCAGCTGTGCTTATCCTTTTGGAGTCAGAGGACAAGACGTATGCTGTTCTTACTGAGCAGGCTAGAATCCCTGTGGGAAGGTTTATATTGGAGTTGCCCGCTGGAATGTTGGATGTTGACAACGGTGATTTTCTTGGAGCTGCAATCCGTGAGGTTGAGGAGGAGACTGGTATACACCTAAAACAAGATCACATGGTGAACCTCACATCCTTCCTCGACCAATCCACTGGGTGCAGAATATTTCCTTCGCCAGTATGCTGCTCTATTTATTTTCTGGAATGTCATTTGAAACTCAAATGTATGAGACCTCTTTTTTGTTCCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

241

Amino Acids

26.25

Weight (kDa)

5.96

Isoelectric Point (pI)

62.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	571
AciI	CCGC	5 cut(s)	25, 42, 126, 255, 498
AclWI	GGATC	3 cut(s)	48, 61, 160
AcsI	RAATTY	1 cut(s)	326
AcuI	CTGAAG	2 cut(s)	43, 239
AdeI	CACNNNGTG	2 cut(s)	595, 630
AfiI	CCNNNNNNNGG	1 cut(s)	176
AgsI	TTSAA	2 cut(s)	332, 688
AjnI	CCWGG	1 cut(s)	370
AloI	GAACNNNNNNTCC	2 cut(s)	590, 622
AluBI	AGCT	4 cut(s)	63, 398, 404, 539
AluI	AGCT	4 cut(s)	63, 398, 404, 539
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	3 cut(s)	270, 557, 697
AlwI	GGATC	3 cut(s)	48, 61, 160
AlwNI	CAGNNNCTG	1 cut(s)	217
ApeKI	GCWGC	6 cut(s)	63, 149, 398, 401, 539, 657
ApoI	RAATTY	1 cut(s)	326
ArsI	GACNNNNNNTTYG	1 cut(s)	696
AspS9I	GGNCC	1 cut(s)	392
AsuHPI	GGTGA	3 cut(s)	78, 536, 607
AvaII	GGWCC	1 cut(s)	392
BamHI	GGATCC	1 cut(s)	53
BauI	CACGAG	2 cut(s)	273, 387
Bbv12I	GWGCWC	1 cut(s)	12
BbvCI	CCTCAGC	1 cut(s)	45
BbvI	GCAGC	6 cut(s)	50, 136, 385, 413, 526, 644
BceAI	ACGGC	1 cut(s)	268
BciT130I	CCWGG	1 cut(s)	372
BcoDI	GTCTC	3 cut(s)	270, 557, 697
BfaI	CTAG	2 cut(s)	36, 462
BfmI	CTRYAG	1 cut(s)	399
BisI	GCNGC	6 cut(s)	64, 150, 399, 402, 540, 658
BlsI	GCNGC	6 cut(s)	65, 151, 400, 403, 541, 659
Bme1390I	CCNGG	1 cut(s)	372
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	3 cut(s)	55, 259, 369
BmrFI	CCNGG	1 cut(s)	372
BmrI	ACTGGG	1 cut(s)	636
BmuI	ACTGGG	1 cut(s)	636
Bpu10I	CCTNAGC	1 cut(s)	45
Bsa29I	ATCGAT	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	697
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse1I	ACTGG	3 cut(s)	571, 631, 650
BseBI	CCWGG	1 cut(s)	372
BseCI	ATCGAT	1 cut(s)	192
BseGI	GGATG	2 cut(s)	517, 605
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMII	CTCAG	2 cut(s)	36, 444
BseNI	ACTGG	3 cut(s)	571, 631, 650
BseRI	GAGGAG	2 cut(s)	572, 575
BseXI	GCAGC	6 cut(s)	50, 136, 385, 413, 526, 644
BsgI	GTGCAG	1 cut(s)	652
BshVI	ATCGAT	1 cut(s)	192
BsiHKAI	GWGCWC	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmAI	GTCTC	3 cut(s)	270, 557, 697
BsmFI	GGGAC	1 cut(s)	24
Bso31I	GGTCTC	1 cut(s)	697
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	3 cut(s)	53, 165, 586
BspACI	CCGC	5 cut(s)	25, 42, 126, 255, 498
BspCNI	CTCAG	2 cut(s)	37, 445
BspDI	ATCGAT	1 cut(s)	192
BspLI	GGNNCC	3 cut(s)	55, 259, 369
BspMAI	CTGCAG	1 cut(s)	403
BspPI	GGATC	3 cut(s)	48, 61, 160
BspTNI	GGTCTC	1 cut(s)	697
BsrI	ACTGG	3 cut(s)	571, 631, 650
BssMI	GATC	3 cut(s)	53, 165, 586
BssNAI	GTATAC	1 cut(s)	572
BssSI	CACGAG	2 cut(s)	273, 387
Bst1107I	GTATAC	1 cut(s)	572
Bst2BI	CACGAG	2 cut(s)	273, 387
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	2 cut(s)	93, 524
BstC8I	GCNNGC	2 cut(s)	459, 498
BstDEI	CTNAG	2 cut(s)	45, 453
BstF5I	GGATG	2 cut(s)	517, 605
BstKTI	GATC	3 cut(s)	56, 168, 589
BstMAI	GTCTC	3 cut(s)	270, 557, 697
BstMBI	GATC	3 cut(s)	53, 165, 586
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	370
BstSFI	CTRYAG	1 cut(s)	399
BstV1I	GCAGC	6 cut(s)	50, 136, 385, 413, 526, 644
BstX2I	RGATCY	1 cut(s)	53
BstXI	CCANNNNNNTGG	1 cut(s)	626
BstYI	RGATCY	1 cut(s)	53
BstZ17I	GTATAC	1 cut(s)	572
Bsu15I	ATCGAT	1 cut(s)	192
BsuTUI	ATCGAT	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	517, 605
BtsI	GCAGTG	1 cut(s)	218
BtsIMutI	CAGTG	2 cut(s)	218, 624
Cac8I	GCNNGC	2 cut(s)	459, 498
CaiI	CAGNNNCTG	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	392
ClaI	ATCGAT	1 cut(s)	192
CviAII	CATG	2 cut(s)	262, 592
CviJI	RGCY	6 cut(s)	63, 217, 398, 404, 461, 539
CviKI_1	RGCY	6 cut(s)	63, 217, 398, 404, 461, 539
DdeI	CTNAG	2 cut(s)	45, 453
DpnI	GATC	3 cut(s)	55, 167, 588
DpnII	GATC	3 cut(s)	53, 165, 586
DraIII	CACNNNGTG	2 cut(s)	595, 630
EciI	GGCGGA	1 cut(s)	14
Eco31I	GGTCTC	1 cut(s)	697
Eco47I	GGWCC	1 cut(s)	392
Eco57I	CTGAAG	2 cut(s)	43, 239
EcoRII	CCWGG	1 cut(s)	370
FaeI	CATG	2 cut(s)	265, 595
FaiI	YATR	9 cut(s)	158, 263, 299, 441, 485, 572, 593, 655, 701
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	2 cut(s)	261, 591
FauI	CCCGC	3 cut(s)	49, 133, 505
FblI	GTMKAC	1 cut(s)	571
Fnu4HI	GCNGC	6 cut(s)	64, 150, 399, 402, 540, 658
FokI	GGATG	2 cut(s)	524, 592
Fsp4HI	GCNGC	6 cut(s)	64, 150, 399, 402, 540, 658
FspBI	CTAG	2 cut(s)	36, 462
GluI	GCNGC	6 cut(s)	64, 150, 399, 402, 540, 658
Hin1II	CATG	2 cut(s)	265, 595
HincII	GTYRAC	3 cut(s)	96, 122, 517
HindII	GTYRAC	3 cut(s)	96, 122, 517
HinfI	GANTC	5 cut(s)	21, 80, 194, 422, 465
HpaI	GTTAAC	1 cut(s)	96
HphI	GGTGA	3 cut(s)	78, 536, 607
Hpy166II	GTNNAC	5 cut(s)	96, 122, 517, 572, 598
Hpy188I	TCNGA	5 cut(s)	7, 79, 165, 324, 427
Hpy188III	TCNNGA	4 cut(s)	139, 169, 304, 674
Hpy8I	GTNNAC	5 cut(s)	96, 122, 517, 572, 598
HpyAV	CCTTC	4 cut(s)	67, 471, 619, 654
HpyCH4III	ACNGT	2 cut(s)	93, 524
HpyCH4IV	ACGT	1 cut(s)	437
HpyCH4V	TGCA	5 cut(s)	66, 386, 401, 542, 633
HpyF3I	CTNAG	2 cut(s)	45, 453
HpySE526I	ACGT	1 cut(s)	437
Hsp92II	CATG	2 cut(s)	265, 595
KspAI	GTTAAC	1 cut(s)	96
Kzo9I	GATC	3 cut(s)	53, 165, 586
LmnI	GCTCC	1 cut(s)	536
Lsp1109I	GCAGC	6 cut(s)	50, 136, 385, 413, 526, 644
MaeI	CTAG	2 cut(s)	36, 462
MaeII	ACGT	1 cut(s)	437
MaeIII	GTNAC	1 cut(s)	84
MalI	GATC	3 cut(s)	55, 167, 588
MboI	GATC	3 cut(s)	53, 165, 586
MboII	GAAGA	2 cut(s)	189, 232
MflI	RGATCY	1 cut(s)	53
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	2 cut(s)	282, 326
MlyI	GAGTC	3 cut(s)	15, 74, 431
MmeI	TCCRAC	2 cut(s)	31, 489
MnlI	CCTC	9 cut(s)	40, 383, 421, 544, 550, 553, 611, 623, 717
MseI	TTAA	2 cut(s)	95, 281
MspA1I	CMGCKG	5 cut(s)	44, 63, 398, 404, 500
MspR9I	CCNGG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	372
NdeII	GATC	3 cut(s)	53, 165, 586
NlaIII	CATG	2 cut(s)	265, 595
NlaIV	GGNNCC	3 cut(s)	55, 259, 369
NmuCI	GTSAC	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	2 cut(s)	80, 89
PfeI	GAWTC	2 cut(s)	194, 465
PkrI	GCNGC	6 cut(s)	65, 151, 400, 403, 541, 659
PleI	GAGTC	3 cut(s)	15, 74, 430
PpsI	GAGTC	3 cut(s)	15, 74, 430
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	3 cut(s)	55, 259, 369
PspPI	GGNCC	1 cut(s)	392
PstI	CTGCAG	1 cut(s)	403
PstNI	CAGNNNCTG	1 cut(s)	217
PsuI	RGATCY	1 cut(s)	53
PvuII	CAGCTG	3 cut(s)	63, 398, 404
SaqAI	TTAA	2 cut(s)	95, 281
SatI	GCNGC	6 cut(s)	64, 150, 399, 402, 540, 658
Sau3AI	GATC	3 cut(s)	53, 165, 586
Sau96I	GGNCC	1 cut(s)	392
SchI	GAGTC	3 cut(s)	15, 74, 431
ScrFI	CCNGG	1 cut(s)	372
SduI	GDGCHC	1 cut(s)	12
SfcI	CTRYAG	1 cut(s)	399
SinI	GGWCC	1 cut(s)	392
Sse9I	AATT	2 cut(s)	282, 326
SsiI	CCGC	5 cut(s)	25, 42, 126, 255, 498
SspI	AATATT	1 cut(s)	639
SspMI	CTAG	2 cut(s)	36, 462
StyD4I	CCNGG	1 cut(s)	370
TaaI	ACNGT	2 cut(s)	93, 524
TaiI	ACGT	1 cut(s)	440
TaqI	TCGA	3 cut(s)	192, 345, 615
TasI	AATT	2 cut(s)	282, 326
TfiI	GAWTC	2 cut(s)	194, 465
Tru1I	TTAA	2 cut(s)	95, 281
Tru9I	TTAA	2 cut(s)	95, 281
TscAI	CASTG	2 cut(s)	218, 631
TseFI	GTSAC	1 cut(s)	84
TseI	GCWGC	6 cut(s)	63, 149, 398, 401, 539, 657
Tsp45I	GTSAC	1 cut(s)	84
TspGWI	ACGGA	1 cut(s)	536
TspRI	CASTG	2 cut(s)	218, 631
VpaK11BI	GGWCC	1 cut(s)	392
XapI	RAATTY	1 cut(s)	326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	571
XspI	CTAG	2 cut(s)	36, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.