Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Forward (+)

23473184 .. 23477969

Gene Structure 4786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37559

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTCGTTGATCCCCAGAACCACACTCACACTCACACTCACACTCCCCAGAACACTCCTCGCCCTTCGATCCTTCTCCTGCAAAATGTCATCCGACCCGCCACTGTTGACTCACTCCCTCACTCTCCCGAGTCAACTCGCCGCCGAGCCCGTCCAGATCGTCGCCGCCCCCCACATCTCCTCCTCCCAGTTCAGGAGCGCTATTGATTCGTCTTTGTTTAAGCAGTGGCTGAAGAACATGGAGAGTGAAACTGGGATTCTACGCGACGGTTCTTTGGCTCTGAAACGAGTTCTAATTCAGGGTGTGGATATGTTTGGAAAGAGGATTGGGTTTCTGAAGTTTGAAGCAGATGTGATTGATAAAGAAACAGGGGAAAAGGTTCCAGGTATTGTGTTTGCACGCGGACCGGCTGTAGCTGTGCTTATACTTTTGGAATCGGAGGGCAAGGCTTATGCTATTCTTACTGAACAGGTTAGAGTACCTGTTGGAAGGATCATACTGGAGTTGCCTGCTGGAATGTTGGATGATGACAAGGGTGATTTTCTCGGCACCGCAATCCGTGAGGTTGCAGATGAACTTGTAGCAGAGTTTTCTGACCCTATCAATGGTGTCACATCCCCTGATCAAATTGACGAGGTGCACATTGAAGTGGCTGATTATATACAGAGTTTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

225

Amino Acids

24.5

Weight (kDa)

4.86

Isoelectric Point (pI)

50.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	548
AccII	CGCG	2 cut(s)	264, 402
AciI	CCGC	5 cut(s)	98, 141, 165, 402, 552
AclWI	GGATC	3 cut(s)	4, 63, 500
AcuI	CTGAAG	2 cut(s)	251, 356
AfaI	GTAC	1 cut(s)	480
AfeI	AGCGCT	1 cut(s)	199
AfiI	CCNNNNNNNGG	2 cut(s)	192, 605
AgsI	TTSAA	2 cut(s)	344, 647
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	1 cut(s)	416
AluI	AGCT	1 cut(s)	416
Alw21I	GWGCWC	1 cut(s)	642
Alw44I	GTGCAC	1 cut(s)	638
AlwI	GGATC	3 cut(s)	4, 63, 500
AlwNI	CAGNNNCTG	1 cut(s)	229
Ama87I	CYCGRG	1 cut(s)	127
Aor51HI	AGCGCT	1 cut(s)	199
ApaLI	GTGCAC	1 cut(s)	638
Asp700I	GAANNNNTTC	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	404
AsuHPI	GGTGA	1 cut(s)	548
AvaI	CYCGRG	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	404
BaeGI	GKGCMC	1 cut(s)	642
BanI	GGYRCC	1 cut(s)	548
BanII	GRGCYC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	642
BciT130I	CCWGG	1 cut(s)	384
BclI	TGATCA	1 cut(s)	622
BfmI	CTRYAG	1 cut(s)	411
BfoI	RGCGCY	1 cut(s)	201
BisI	GCNGC	2 cut(s)	141, 165
BlsI	GCNGC	2 cut(s)	142, 166
Bme1390I	CCNGG	1 cut(s)	384
Bme18I	GGWCC	1 cut(s)	404
BmeT110I	CYCGRG	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	404
BmiI	GGNNCC	2 cut(s)	381, 550
BmrFI	CCNGG	1 cut(s)	384
BmrI	ACTGGG	2 cut(s)	181, 261
BmuI	ACTGGG	2 cut(s)	181, 261
BpmI	CTGGAG	1 cut(s)	521
BsaXI	ACNNNNNCTCC	4 cut(s)	27, 57, 164, 194
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 605
Bse118I	RCCGGY	1 cut(s)	406
Bse1I	ACTGG	3 cut(s)	187, 256, 504
BseBI	CCWGG	1 cut(s)	384
BseGI	GGATG	3 cut(s)	89, 529, 614
BseLI	CCNNNNNNNGG	2 cut(s)	192, 605
BseNI	ACTGG	3 cut(s)	187, 256, 504
BseRI	GAGGAG	3 cut(s)	47, 169, 172
BseSI	GKGCMC	1 cut(s)	642
Bsh1236I	CGCG	2 cut(s)	264, 402
BshNI	GGYRCC	1 cut(s)	548
BsiHKAI	GWGCWC	1 cut(s)	642
BsiHKCI	CYCGRG	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	407
BslI	CCNNNNNNNGG	2 cut(s)	192, 605
BsoBI	CYCGRG	1 cut(s)	127
Bsp1286I	GDGCHC	2 cut(s)	150, 642
Bsp143I	GATC	5 cut(s)	9, 68, 156, 492, 622
BspACI	CCGC	5 cut(s)	98, 141, 165, 402, 552
BspFNI	CGCG	2 cut(s)	264, 402
BspLI	GGNNCC	2 cut(s)	381, 550
BspPI	GGATC	3 cut(s)	4, 63, 500
BspT107I	GGYRCC	1 cut(s)	548
BsrFI	RCCGGY	1 cut(s)	406
BsrI	ACTGG	3 cut(s)	187, 256, 504
BssAI	RCCGGY	1 cut(s)	406
BssMI	GATC	5 cut(s)	9, 68, 156, 492, 622
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	2 cut(s)	105, 269
BstC8I	GCNNGC	2 cut(s)	400, 510
BstF5I	GGATG	3 cut(s)	89, 529, 614
BstFNI	CGCG	2 cut(s)	264, 402
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	5 cut(s)	12, 71, 159, 495, 625
BstMBI	GATC	5 cut(s)	9, 68, 156, 492, 622
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	382
BstSFI	CTRYAG	1 cut(s)	411
BstSLI	GKGCMC	1 cut(s)	642
BstUI	CGCG	2 cut(s)	264, 402
BtsCI	GGATG	3 cut(s)	89, 529, 614
BtsI	GCAGTG	1 cut(s)	230
BtsIMutI	CAGTG	2 cut(s)	101, 230
Cac8I	GCNNGC	2 cut(s)	400, 510
CaiI	CAGNNNCTG	1 cut(s)	229
CfoI	GCGC	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	406
Cfr13I	GGNCC	1 cut(s)	404
CpoI	CGGWCCG	1 cut(s)	404
Csp6I	GTAC	1 cut(s)	479
CspI	CGGWCCG	1 cut(s)	404
CviAII	CATG	1 cut(s)	238
CviJI	RGCY	7 cut(s)	148, 229, 278, 410, 416, 449, 653
CviKI_1	RGCY	7 cut(s)	148, 229, 278, 410, 416, 449, 653
CviQI	GTAC	1 cut(s)	479
DpnI	GATC	5 cut(s)	11, 70, 158, 494, 624
DpnII	GATC	5 cut(s)	9, 68, 156, 492, 622
Eco24I	GRGCYC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	404
Eco47III	AGCGCT	1 cut(s)	199
Eco57I	CTGAAG	2 cut(s)	251, 356
Eco88I	CYCGRG	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	382
EcoT38I	GRGCYC	1 cut(s)	150
FaeI	CATG	1 cut(s)	241
FaiI	YATR	7 cut(s)	239, 311, 425, 453, 497, 660, 662
FatI	CATG	1 cut(s)	237
FauI	CCCGC	1 cut(s)	105
FbaI	TGATCA	1 cut(s)	622
Fnu4HI	GCNGC	2 cut(s)	141, 165
FokI	GGATG	3 cut(s)	76, 536, 601
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	2 cut(s)	141, 165
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	2 cut(s)	141, 165
GsuI	CTGGAG	1 cut(s)	521
HaeII	RGCGCY	1 cut(s)	201
HapII	CCGG	1 cut(s)	407
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	1 cut(s)	241
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HincII	GTYRAC	2 cut(s)	108, 134
HindII	GTYRAC	2 cut(s)	108, 134
HinfI	GANTC	5 cut(s)	109, 130, 206, 256, 434
HpaII	CCGG	1 cut(s)	407
HphI	GGTGA	1 cut(s)	548
Hpy166II	GTNNAC	3 cut(s)	108, 134, 640
Hpy188I	TCNGA	5 cut(s)	94, 282, 336, 439, 595
Hpy188III	TCNNGA	3 cut(s)	127, 154, 193
Hpy8I	GTNNAC	3 cut(s)	108, 134, 640
Hpy99I	CGWCG	2 cut(s)	164, 269
HpyAV	CCTTC	3 cut(s)	74, 82, 483
HpyCH4III	ACNGT	2 cut(s)	105, 269
HpyCH4V	TGCA	4 cut(s)	81, 398, 569, 640
Hsp92II	CATG	1 cut(s)	241
HspAI	GCGC	1 cut(s)	198
Ksp22I	TGATCA	1 cut(s)	622
Kzo9I	GATC	5 cut(s)	9, 68, 156, 492, 622
LmnI	GCTCC	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	5 cut(s)	11, 70, 158, 494, 624
MboI	GATC	5 cut(s)	9, 68, 156, 492, 622
MboII	GAAGA	1 cut(s)	244
MhlI	GDGCHC	2 cut(s)	150, 642
MluCI	AATT	2 cut(s)	294, 627
MlyI	GAGTC	2 cut(s)	103, 139
MmeI	TCCRAC	3 cut(s)	117, 466, 501
MnlI	CCTC	8 cut(s)	68, 128, 190, 193, 315, 433, 556, 628
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	1 cut(s)	219
MslI	CAYNNNNRTG	1 cut(s)	647
MspI	CCGG	1 cut(s)	407
MspR9I	CCNGG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	384
MvnI	CGCG	2 cut(s)	264, 402
NdeII	GATC	5 cut(s)	9, 68, 156, 492, 622
NlaIII	CATG	1 cut(s)	241
NlaIV	GGNNCC	2 cut(s)	381, 550
NmeAIII	GCCGAG	2 cut(s)	169, 525
NmuCI	GTSAC	1 cut(s)	610
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	3 cut(s)	206, 256, 434
PkrI	GCNGC	2 cut(s)	142, 166
PleI	GAGTC	2 cut(s)	103, 138
PpsI	GAGTC	2 cut(s)	103, 138
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	2 cut(s)	381, 550
PspPI	GGNCC	1 cut(s)	404
PstNI	CAGNNNCTG	1 cut(s)	229
RsaI	GTAC	1 cut(s)	480
RsaNI	GTAC	1 cut(s)	479
RseI	CAYNNNNRTG	1 cut(s)	647
Rsr2I	CGGWCCG	1 cut(s)	404
RsrII	CGGWCCG	1 cut(s)	404
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	2 cut(s)	141, 165
Sau3AI	GATC	5 cut(s)	9, 68, 156, 492, 622
Sau96I	GGNCC	1 cut(s)	404
SchI	GAGTC	2 cut(s)	103, 139
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	2 cut(s)	150, 642
SetI	ASST	7 cut(s)	381, 388, 418, 474, 484, 567, 639
SfcI	CTRYAG	1 cut(s)	411
SinI	GGWCC	1 cut(s)	404
SmiMI	CAYNNNNRTG	1 cut(s)	647
Sse9I	AATT	2 cut(s)	294, 627
SsiI	CCGC	5 cut(s)	98, 141, 165, 402, 552
StyD4I	CCNGG	1 cut(s)	382
TaaI	ACNGT	2 cut(s)	105, 269
TaqI	TCGA	1 cut(s)	67
TasI	AATT	2 cut(s)	294, 627
TauI	GCSGC	2 cut(s)	143, 167
TfiI	GAWTC	3 cut(s)	206, 256, 434
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	2 cut(s)	108, 230
TseFI	GTSAC	1 cut(s)	610
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	1 cut(s)	588
TspGWI	ACGGA	1 cut(s)	548
TspRI	CASTG	2 cut(s)	108, 230
VneI	GTGCAC	1 cut(s)	638
VpaK11BI	GGWCC	1 cut(s)	404
XmnI	GAANNNNTTC	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.