Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Forward (+)

74803268 .. 74804017

Gene Structure 750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG539700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGCTACTCCCAGGCTTCTCGGTCCTCCTGAGCTCCAAAAACCCTCACGCACCACCACCGCTCCGCCGCCACCCCAACCCGAATCCAAACCCGGCTCCAAACCCTCCACCGGCGAACCTTTCGTGGACCTGATGGTGGTGATCTCTTGGAGTGCTAGCGATTCTTCTTTGTTTAAGCAGTGGCTGAAGAACACCCAGAGTGAAAATGGGATTTTACACGGCGGTTCCATGTCTCTTACACGAGTTCTAATTCAGGAGTGGATATGTTCGGGAAGCACATCGGTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

96

Amino Acids

10.37

Weight (kDa)

7.92

Isoelectric Point (pI)

52.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	62
AciI	CCGC	4 cut(s)	60, 65, 68, 222
AcuI	CTGAAG	1 cut(s)	206
AfiI	CCNNNNNNNGG	2 cut(s)	110, 136
AjnI	CCWGG	1 cut(s)	11
AluBI	AGCT	1 cut(s)	34
AluI	AGCT	1 cut(s)	34
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	1 cut(s)	237
AlwNI	CAGNNNCTG	1 cut(s)	184
AspS9I	GGNCC	2 cut(s)	23, 127
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	151
AsuNHI	GCTAGC	1 cut(s)	155
AvaII	GGWCC	2 cut(s)	23, 127
BanII	GRGCYC	1 cut(s)	36
BauI	CACGAG	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	36
BccI	CCATC	1 cut(s)	127
BceAI	ACGGC	1 cut(s)	235
BciT130I	CCWGG	1 cut(s)	13
BcnI	CCSGG	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	237
BfaI	CTAG	1 cut(s)	156
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
Bme1390I	CCNGG	2 cut(s)	13, 93
Bme18I	GGWCC	2 cut(s)	23, 127
BmgT120I	GGNCC	2 cut(s)	23, 127
BmiI	GGNNCC	2 cut(s)	97, 226
BmrFI	CCNGG	2 cut(s)	13, 93
BmtI	GCTAGC	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	30
BpuMI	CCSGG	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	11
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 136
Bse118I	RCCGGY	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	13
BseDI	CCNNGG	1 cut(s)	11
BseLI	CCNNNNNNNGG	2 cut(s)	110, 136
BseMII	CTCAG	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	93, 111
BslI	CCNNNNNNNGG	2 cut(s)	110, 136
BsmAI	GTCTC	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	141
BspACI	CCGC	4 cut(s)	60, 65, 68, 222
BspCNI	CTCAG	1 cut(s)	22
BspLI	GGNNCC	2 cut(s)	97, 226
BspOI	GCTAGC	1 cut(s)	159
BsrBI	CCGCTC	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	11
BssMI	GATC	1 cut(s)	141
BssSI	CACGAG	1 cut(s)	240
Bst2BI	CACGAG	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	1 cut(s)	30
BstKTI	GATC	1 cut(s)	144
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	1 cut(s)	141
BstNI	CCWGG	1 cut(s)	13
BstSCI	CCNGG	2 cut(s)	11, 91
BtsI	GCAGTG	1 cut(s)	185
BtsIMutI	CAGTG	1 cut(s)	185
Cac8I	GCNNGC	1 cut(s)	157
CaiI	CAGNNNCTG	1 cut(s)	184
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	23, 127
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	5 cut(s)	5, 16, 34, 96, 184
CviKI_1	RGCY	5 cut(s)	5, 16, 34, 96, 184
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
EciI	GGCGGA	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	36
Eco47I	GGWCC	2 cut(s)	23, 127
Eco53kI	GAGCTC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	206
EcoICRI	GAGCTC	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	11
EcoT38I	GRGCYC	1 cut(s)	36
FaeI	CATG	1 cut(s)	232
FaiI	YATR	2 cut(s)	230, 265
FatI	CATG	1 cut(s)	228
Fnu4HI	GCNGC	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	68
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	1 cut(s)	68
HapII	CCGG	2 cut(s)	93, 111
Hin1II	CATG	1 cut(s)	232
HinfI	GANTC	2 cut(s)	83, 161
HpaII	CCGG	2 cut(s)	93, 111
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	290
Hpy188III	TCNNGA	3 cut(s)	29, 254, 270
Hpy8I	GTNNAC	1 cut(s)	127
HpyF3I	CTNAG	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	141
LmnI	GCTCC	3 cut(s)	39, 67, 101
LpnPI	CCDG	7 cut(s)	25, 42, 106, 124, 143, 209, 239
MaeI	CTAG	1 cut(s)	156
MalI	GATC	1 cut(s)	143
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	1 cut(s)	141
MboII	GAAGA	2 cut(s)	156, 199
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	1 cut(s)	249
MnlI	CCTC	3 cut(s)	36, 55, 115
MseI	TTAA	1 cut(s)	174
MspI	CCGG	2 cut(s)	93, 111
MspR9I	CCNGG	2 cut(s)	13, 93
MvaI	CCWGG	1 cut(s)	13
NciI	CCSGG	1 cut(s)	93
NdeII	GATC	1 cut(s)	141
NheI	GCTAGC	1 cut(s)	155
NlaIII	CATG	1 cut(s)	232
NlaIV	GGNNCC	2 cut(s)	97, 226
PfeI	GAWTC	2 cut(s)	83, 161
PkrI	GCNGC	1 cut(s)	69
Psp124BI	GAGCTC	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	11
PspN4I	GGNNCC	2 cut(s)	97, 226
PspPI	GGNCC	2 cut(s)	23, 127
PstNI	CAGNNNCTG	1 cut(s)	184
SacI	GAGCTC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	1 cut(s)	141
Sau96I	GGNCC	2 cut(s)	23, 127
ScrFI	CCNGG	2 cut(s)	13, 93
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	3 cut(s)	36, 121, 132
SgrAI	CRCCGGYG	1 cut(s)	110
SinI	GGWCC	2 cut(s)	23, 127
Sse9I	AATT	1 cut(s)	249
SsiI	CCGC	4 cut(s)	60, 65, 68, 222
SspMI	CTAG	1 cut(s)	156
SstI	GAGCTC	1 cut(s)	36
StyD4I	CCNGG	2 cut(s)	11, 91
TaqII	GACCGA	1 cut(s)	11
TasI	AATT	1 cut(s)	249
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	2 cut(s)	83, 161
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	1 cut(s)	185
TspRI	CASTG	1 cut(s)	185
VpaK11BI	GGWCC	2 cut(s)	23, 127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.