Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Forward (+)

50599630 .. 50605527

Gene Structure 5898 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00256200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGACACATGGAGTTTGTGAGATGTTGTGGATTCGTAATGTGTTGAAAGATTTGAGTTTTAAACTCAAAAAACCTATGGACTTGCATTGTGATAGCACGTATGCTATTGAGATTGCTCATAATCCCCTTTATTCATCAATAGATTTCAGGAGTGCTATTGATTCGTCTCTGTTTAAGCAGTGGCTGAAGAACATGGAGAGTGAAACTGGGATTCTACGCGGCGGTTCTTTGGCTCTGAAACGAGTTCTAATTCAGGGTGTGGATATGTTTGGAAAGAGGATTGGGTTTCTGAAGTTTGAAGCAGATGTGATTGATAAAGAAACAGGGAAAAAGGTTCCAGGTATTGTGTTTGCACGCGGACCGGCTGTAGCTGTGCTTATACTTTTGGAATCGGAGGGCAAGACTTATGCTGTTCTTACCGAACAGGTTAGAGTACCTGTTGGAAGGATCATACTGGAGTTGCCTGCTGGAATGTTGAATGATGACAAGGGTGATTTTCTCGGCACCGCAATCTGTGAGGTGGAAGAAGAGACTGGCATATGTCTAAAACAAGAAGACGTGGTGGACCTCACAGCCTTCCTCGACCAATCTACTGGATGCAGAATGTTTCCATCTCCTGGAGGGTGTGATGAAGAACTCAGCCTCTATCTGTACAGAGGGCAGGTGGATAAAGAGATTATTGATCAGCTGCAAGGTAAAGAAACAGGTCTTCGTGACCATGGAGAGCTGATTAGGGTTCGTGTGCTCCCTTATGAAAAGCTCTGGCGCATGACAGCCGATGCAAAGGTTTTAACAGCCGTTGCACTCTATGAAATGGCAAAAAGAGAAGGGCTCTTGCCTCCCCTGAAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

284

Amino Acids

31.71

Weight (kDa)

5.44

Isoelectric Point (pI)

37.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	119 - 260	1.9e-10	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	652
Acc36I	ACCTGC	1 cut(s)	652
AccB1I	GGYRCC	1 cut(s)	503
AccB7I	CCANNNNNTGG	1 cut(s)	617
AccII	CGCG	2 cut(s)	219, 357
AciI	CCGC	4 cut(s)	219, 222, 357, 507
AclWI	GGATC	1 cut(s)	455
AcuI	CTGAAG	2 cut(s)	206, 311
AfaI	GTAC	2 cut(s)	435, 653
AfiI	CCNNNNNNNGG	1 cut(s)	617
AgsI	TTSAA	3 cut(s)	46, 299, 478
AjiI	CACGTC	1 cut(s)	559
AjnI	CCWGG	2 cut(s)	337, 616
AluBI	AGCT	4 cut(s)	371, 688, 727, 760
AluI	AGCT	4 cut(s)	371, 688, 727, 760
Alw21I	GWGCWC	1 cut(s)	747
Alw26I	GTCTC	2 cut(s)	171, 524
AlwI	GGATC	1 cut(s)	455
AlwNI	CAGNNNCTG	1 cut(s)	184
ApeKI	GCWGC	1 cut(s)	688
AspLEI	GCGC	1 cut(s)	768
AspS9I	GGNCC	2 cut(s)	359, 565
AsuHPI	GGTGA	1 cut(s)	503
AvaII	GGWCC	2 cut(s)	359, 565
BanI	GGYRCC	1 cut(s)	503
BanII	GRGCYC	1 cut(s)	834
BbsI	GAAGAC	2 cut(s)	561, 701
Bbv12I	GWGCWC	1 cut(s)	747
BbvI	GCAGC	1 cut(s)	675
BccI	CCATC	1 cut(s)	619
BceAI	ACGGC	1 cut(s)	782
BciT130I	CCWGG	2 cut(s)	339, 618
BclI	TGATCA	1 cut(s)	682
BcoDI	GTCTC	2 cut(s)	171, 524
BfmI	CTRYAG	1 cut(s)	366
BfuAI	ACCTGC	1 cut(s)	652
BisI	GCNGC	2 cut(s)	220, 689
BlsI	GCNGC	2 cut(s)	221, 690
Bme1390I	CCNGG	2 cut(s)	339, 618
Bme18I	GGWCC	2 cut(s)	359, 565
BmgBI	CACGTC	1 cut(s)	559
BmgT120I	GGNCC	2 cut(s)	359, 565
BmiI	GGNNCC	2 cut(s)	336, 505
BmrFI	CCNGG	2 cut(s)	339, 618
BmrI	ACTGGG	1 cut(s)	216
BmsI	GCATC	2 cut(s)	587, 769
BmuI	ACTGGG	1 cut(s)	216
BpiI	GAAGAC	2 cut(s)	561, 701
BplI	GAGNNNNNCTC	2 cut(s)	816, 848
BpmI	CTGGAG	2 cut(s)	476, 639
BsaAI	YACGTR	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	718
Bsc4I	CCNNNNNNNGG	1 cut(s)	617
Bse118I	RCCGGY	1 cut(s)	361
Bse1I	ACTGG	4 cut(s)	211, 459, 538, 598
BseBI	CCWGG	2 cut(s)	339, 618
BseDI	CCNNGG	1 cut(s)	718
BseGI	GGATG	1 cut(s)	602
BseLI	CCNNNNNNNGG	1 cut(s)	617
BseMII	CTCAG	1 cut(s)	652
BseNI	ACTGG	4 cut(s)	211, 459, 538, 598
BseXI	GCAGC	1 cut(s)	675
Bsh1236I	CGCG	2 cut(s)	219, 357
BshNI	GGYRCC	1 cut(s)	503
BsiHKAI	GWGCWC	1 cut(s)	747
BsiSI	CCGG	1 cut(s)	362
BslI	CCNNNNNNNGG	1 cut(s)	617
BsmAI	GTCTC	2 cut(s)	171, 524
BsmBI	CGTCTC	1 cut(s)	171
Bsp1286I	GDGCHC	2 cut(s)	747, 834
Bsp1407I	TGTACA	1 cut(s)	651
Bsp143I	GATC	2 cut(s)	447, 682
Bsp19I	CCATGG	1 cut(s)	718
BspACI	CCGC	4 cut(s)	219, 222, 357, 507
BspCNI	CTCAG	1 cut(s)	651
BspFNI	CGCG	2 cut(s)	219, 357
BspLI	GGNNCC	2 cut(s)	336, 505
BspMI	ACCTGC	1 cut(s)	652
BspPI	GGATC	1 cut(s)	455
BspT107I	GGYRCC	1 cut(s)	503
BsrFI	RCCGGY	1 cut(s)	361
BsrGI	TGTACA	1 cut(s)	651
BsrI	ACTGG	4 cut(s)	211, 459, 538, 598
BssAI	RCCGGY	1 cut(s)	361
BssECI	CCNNGG	1 cut(s)	718
BssMI	GATC	2 cut(s)	447, 682
BssT1I	CCWWGG	1 cut(s)	718
Bst2UI	CCWGG	2 cut(s)	339, 618
Bst6I	CTCTTC	1 cut(s)	522
BstAUI	TGTACA	1 cut(s)	651
BstBAI	YACGTR	1 cut(s)	99
BstC8I	GCNNGC	2 cut(s)	355, 465
BstDEI	CTNAG	1 cut(s)	638
BstDSI	CCRYGG	1 cut(s)	718
BstF5I	GGATG	1 cut(s)	602
BstFNI	CGCG	2 cut(s)	219, 357
BstHHI	GCGC	1 cut(s)	768
BstKTI	GATC	2 cut(s)	450, 685
BstMAI	GTCTC	2 cut(s)	171, 524
BstMBI	GATC	2 cut(s)	447, 682
BstNI	CCWGG	2 cut(s)	339, 618
BstSCI	CCNGG	2 cut(s)	337, 616
BstSFI	CTRYAG	1 cut(s)	366
BstUI	CGCG	2 cut(s)	219, 357
BstV1I	GCAGC	1 cut(s)	675
BstV2I	GAAGAC	2 cut(s)	561, 701
BstXI	CCANNNNNNTGG	1 cut(s)	593
BtgI	CCRYGG	1 cut(s)	718
BtrI	CACGTC	1 cut(s)	559
BtsCI	GGATG	1 cut(s)	602
BtsI	GCAGTG	1 cut(s)	185
BtsIMutI	CAGTG	1 cut(s)	185
BveI	ACCTGC	1 cut(s)	652
Cac8I	GCNNGC	2 cut(s)	355, 465
CaiI	CAGNNNCTG	1 cut(s)	184
CfoI	GCGC	1 cut(s)	768
Cfr10I	RCCGGY	1 cut(s)	361
Cfr13I	GGNCC	2 cut(s)	359, 565
CpoI	CGGWCCG	1 cut(s)	359
Csp6I	GTAC	2 cut(s)	434, 652
CspI	CGGWCCG	1 cut(s)	359
CviAII	CATG	5 cut(s)	8, 193, 719, 769, 852
CviQI	GTAC	2 cut(s)	434, 652
DdeI	CTNAG	1 cut(s)	638
DpnI	GATC	2 cut(s)	449, 684
DpnII	GATC	2 cut(s)	447, 682
DraI	TTTAAA	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	522
EarI	CTCTTC	1 cut(s)	522
Eco130I	CCWWGG	1 cut(s)	718
Eco24I	GRGCYC	1 cut(s)	834
Eco47I	GGWCC	2 cut(s)	359, 565
Eco57I	CTGAAG	2 cut(s)	206, 311
EcoRII	CCWGG	2 cut(s)	337, 616
EcoT14I	CCWWGG	1 cut(s)	718
EcoT38I	GRGCYC	1 cut(s)	834
ErhI	CCWWGG	1 cut(s)	718
Esp3I	CGTCTC	1 cut(s)	171
FaeI	CATG	5 cut(s)	11, 196, 722, 772, 855
FatI	CATG	5 cut(s)	7, 192, 718, 768, 851
FauNDI	CATATG	1 cut(s)	539
FbaI	TGATCA	1 cut(s)	682
Fnu4HI	GCNGC	2 cut(s)	220, 689
FokI	GGATG	1 cut(s)	609
FriOI	GRGCYC	1 cut(s)	834
Fsp4HI	GCNGC	2 cut(s)	220, 689
GlaI	GCGC	1 cut(s)	767
GluI	GCNGC	2 cut(s)	220, 689
GsuI	CTGGAG	2 cut(s)	476, 639
HapII	CCGG	1 cut(s)	362
HhaI	GCGC	1 cut(s)	768
Hin1II	CATG	5 cut(s)	11, 196, 722, 772, 855
Hin6I	GCGC	1 cut(s)	766
HinP1I	GCGC	1 cut(s)	766
HinfI	GANTC	4 cut(s)	31, 161, 211, 389
HpaII	CCGG	1 cut(s)	362
HphI	GGTGA	1 cut(s)	503
Hpy166II	GTNNAC	1 cut(s)	565
Hpy188I	TCNGA	3 cut(s)	237, 291, 394
Hpy188III	TCNNGA	2 cut(s)	148, 713
Hpy8I	GTNNAC	1 cut(s)	565
HpyAV	CCTTC	3 cut(s)	438, 586, 821
HpyCH4IV	ACGT	2 cut(s)	98, 558
HpyCH4V	TGCA	6 cut(s)	85, 353, 600, 691, 782, 803
HpyF3I	CTNAG	1 cut(s)	638
HpySE526I	ACGT	2 cut(s)	98, 558
Hsp92II	CATG	5 cut(s)	11, 196, 722, 772, 855
HspAI	GCGC	1 cut(s)	766
Ksp22I	TGATCA	1 cut(s)	682
Kzo9I	GATC	2 cut(s)	447, 682
LmnI	GCTCC	1 cut(s)	750
Lsp1109I	GCAGC	1 cut(s)	675
LweI	GCATC	2 cut(s)	587, 769
MaeII	ACGT	2 cut(s)	98, 558
MaeIII	GTNAC	1 cut(s)	713
MalI	GATC	2 cut(s)	449, 684
MboI	GATC	2 cut(s)	447, 682
MboII	GAAGA	6 cut(s)	199, 536, 539, 566, 644, 701
MhlI	GDGCHC	2 cut(s)	747, 834
MluCI	AATT	1 cut(s)	249
MmeI	TCCRAC	1 cut(s)	421
MnlI	CCTC	9 cut(s)	270, 388, 511, 578, 590, 614, 650, 653, 849
MseI	TTAA	3 cut(s)	60, 174, 791
MspA1I	CMGCKG	1 cut(s)	688
MspI	CCGG	1 cut(s)	362
MspR9I	CCNGG	2 cut(s)	339, 618
MvaI	CCWGG	2 cut(s)	339, 618
MvnI	CGCG	2 cut(s)	219, 357
NcoI	CCATGG	1 cut(s)	718
NdeI	CATATG	1 cut(s)	539
NdeII	GATC	2 cut(s)	447, 682
NlaIII	CATG	5 cut(s)	11, 196, 722, 772, 855
NlaIV	GGNNCC	2 cut(s)	336, 505
NmeAIII	GCCGAG	1 cut(s)	480
NmuCI	GTSAC	1 cut(s)	713
PaqCI	CACCTGC	1 cut(s)	652
PfeI	GAWTC	4 cut(s)	31, 161, 211, 389
PflMI	CCANNNNNTGG	1 cut(s)	617
PfoI	TCCNGGA	1 cut(s)	616
PkrI	GCNGC	2 cut(s)	221, 690
Ppu21I	YACGTR	1 cut(s)	99
Psp6I	CCWGG	2 cut(s)	337, 616
PspGI	CCWGG	2 cut(s)	337, 616
PspN4I	GGNNCC	2 cut(s)	336, 505
PspPI	GGNCC	2 cut(s)	359, 565
PstNI	CAGNNNCTG	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	688
RsaI	GTAC	2 cut(s)	435, 653
RsaNI	GTAC	2 cut(s)	434, 652
Rsr2I	CGGWCCG	1 cut(s)	359
RsrII	CGGWCCG	1 cut(s)	359
SaqAI	TTAA	3 cut(s)	60, 174, 791
SatI	GCNGC	2 cut(s)	220, 689
Sau3AI	GATC	2 cut(s)	447, 682
Sau96I	GGNCC	2 cut(s)	359, 565
ScrFI	CCNGG	2 cut(s)	339, 618
SduI	GDGCHC	2 cut(s)	747, 834
SfaNI	GCATC	2 cut(s)	587, 769
SfcI	CTRYAG	1 cut(s)	366
SinI	GGWCC	2 cut(s)	359, 565
Sse9I	AATT	1 cut(s)	249
SsiI	CCGC	4 cut(s)	219, 222, 357, 507
StyD4I	CCNGG	2 cut(s)	337, 616
StyI	CCWWGG	1 cut(s)	718
TaiI	ACGT	2 cut(s)	101, 561
TaqI	TCGA	1 cut(s)	582
TasI	AATT	1 cut(s)	249
TatI	WGTACW	1 cut(s)	651
TauI	GCSGC	1 cut(s)	222
TfiI	GAWTC	4 cut(s)	31, 161, 211, 389
Tru1I	TTAA	3 cut(s)	60, 174, 791
Tru9I	TTAA	3 cut(s)	60, 174, 791
TscAI	CASTG	1 cut(s)	185
TseFI	GTSAC	1 cut(s)	713
TseI	GCWGC	1 cut(s)	688
Tsp45I	GTSAC	1 cut(s)	713
TspDTI	ATGAA	4 cut(s)	123, 645, 768, 825
TspRI	CASTG	1 cut(s)	185
Van91I	CCANNNNNTGG	1 cut(s)	617
VpaK11BI	GGWCC	2 cut(s)	359, 565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.