Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Reverse (-)

43686660 .. 43691544

Gene Structure 4885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG247800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCTACTCCCAGGCTTCTCGGTCCTCCTGAGCTCCAAAAACCCTCACGCACCACCACCGCTCCGCCGCCACCCCAACCCGAATCCAAACCCGGCTCCAAACCCTCCACCGGCGAACCTTTCGTGGACCTGATGGTGGTGATCTCTTGGTCAGATGTCTCTCTCGTATCGTCGCTGCCCCCCCATATCTCCGATTCCGATTTCAGGAGTGCTAGCGATTCTTCTTTGTTTAAGCAGTGGCTGAAGAACACCCAGAGTGAAAATGGGATTTTACACGGCGGTTCCATGTCTCTTACACGAGTTCTAATTCAGGTTCCAGGTATTGTGTTTGCACGAGGAGCAGCTGTAGCTGTGCTTATCCTTTTGAAGTCAGAGGAGATGACGTATGCTGTTCTTACTGAGCAGGAGTCTGGAATTGTTGTGCGTCTTTGTGTTGTTGGTGCTGCAATCCAAGAAGTGATGGAATCATATGAGGTTGAAATAAATGGGAAGGTGTATCAAGGGACTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

170

Amino Acids

18.28

Weight (kDa)

5.17

Isoelectric Point (pI)

49.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	62
AciI	CCGC	4 cut(s)	60, 65, 68, 279
AcuI	CTGAAG	1 cut(s)	263
AfiI	CCNNNNNNNGG	3 cut(s)	110, 136, 204
AgsI	TTSAA	2 cut(s)	367, 479
AjnI	CCWGG	2 cut(s)	11, 316
AluBI	AGCT	3 cut(s)	34, 344, 350
AluI	AGCT	3 cut(s)	34, 344, 350
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	2 cut(s)	163, 294
AlwNI	CAGNNNCTG	1 cut(s)	241
ApeKI	GCWGC	3 cut(s)	175, 341, 443
AspS9I	GGNCC	2 cut(s)	23, 127
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	151
AsuNHI	GCTAGC	1 cut(s)	212
AvaII	GGWCC	2 cut(s)	23, 127
BanII	GRGCYC	1 cut(s)	36
BauI	CACGAG	2 cut(s)	297, 333
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	3 cut(s)	162, 353, 430
BccI	CCATC	2 cut(s)	127, 454
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	2 cut(s)	13, 318
BcnI	CCSGG	1 cut(s)	93
BcoDI	GTCTC	2 cut(s)	163, 294
BfaI	CTAG	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	345
BisI	GCNGC	4 cut(s)	68, 176, 342, 444
BlsI	GCNGC	4 cut(s)	69, 177, 343, 445
Bme1390I	CCNGG	3 cut(s)	13, 93, 318
Bme18I	GGWCC	2 cut(s)	23, 127
BmgT120I	GGNCC	2 cut(s)	23, 127
BmiI	GGNNCC	3 cut(s)	97, 283, 315
BmrFI	CCNGG	3 cut(s)	13, 93, 318
BmtI	GCTAGC	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	30
BpuMI	CCSGG	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	11
BsaXI	ACNNNNNCTCC	6 cut(s)	46, 76, 330, 360, 368, 398
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 136, 204
Bse118I	RCCGGY	1 cut(s)	110
BseBI	CCWGG	2 cut(s)	13, 318
BseDI	CCNNGG	1 cut(s)	11
BseLI	CCNNNNNNNGG	3 cut(s)	110, 136, 204
BseMII	CTCAG	2 cut(s)	21, 390
BseRI	GAGGAG	2 cut(s)	351, 389
BseXI	GCAGC	3 cut(s)	162, 353, 430
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	93, 111
BslI	CCNNNNNNNGG	3 cut(s)	110, 136, 204
BsmAI	GTCTC	2 cut(s)	163, 294
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	141
BspACI	CCGC	4 cut(s)	60, 65, 68, 279
BspCNI	CTCAG	2 cut(s)	22, 391
BspLI	GGNNCC	3 cut(s)	97, 283, 315
BspOI	GCTAGC	1 cut(s)	216
BsrBI	CCGCTC	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	11
BssMI	GATC	1 cut(s)	141
BssSI	CACGAG	2 cut(s)	297, 333
Bst2BI	CACGAG	2 cut(s)	297, 333
Bst2UI	CCWGG	2 cut(s)	13, 318
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	2 cut(s)	30, 399
BstKTI	GATC	1 cut(s)	144
BstMAI	GTCTC	2 cut(s)	163, 294
BstMBI	GATC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	2 cut(s)	338, 347
BstNI	CCWGG	2 cut(s)	13, 318
BstSCI	CCNGG	3 cut(s)	11, 91, 316
BstSFI	CTRYAG	1 cut(s)	345
BstV1I	GCAGC	3 cut(s)	162, 353, 430
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	242
Cac8I	GCNNGC	1 cut(s)	214
CaiI	CAGNNNCTG	1 cut(s)	241
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	23, 127
CseI	GACGC	1 cut(s)	413
CviAII	CATG	1 cut(s)	286
CviJI	RGCY	7 cut(s)	5, 16, 34, 96, 241, 344, 350
CviKI_1	RGCY	7 cut(s)	5, 16, 34, 96, 241, 344, 350
DdeI	CTNAG	2 cut(s)	30, 399
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
EciI	GGCGGA	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	36
Eco47I	GGWCC	2 cut(s)	23, 127
Eco53kI	GAGCTC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	34
EcoRII	CCWGG	2 cut(s)	11, 316
EcoT38I	GRGCYC	1 cut(s)	36
FaeI	CATG	1 cut(s)	289
FaiI	YATR	5 cut(s)	186, 287, 387, 469, 471
FatI	CATG	1 cut(s)	285
FauNDI	CATATG	1 cut(s)	469
Fnu4HI	GCNGC	4 cut(s)	68, 176, 342, 444
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	4 cut(s)	68, 176, 342, 444
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	4 cut(s)	68, 176, 342, 444
HapII	CCGG	2 cut(s)	93, 111
HgaI	GACGC	1 cut(s)	413
Hin1II	CATG	1 cut(s)	289
HinfI	GANTC	5 cut(s)	83, 194, 218, 407, 464
HpaII	CCGG	2 cut(s)	93, 111
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	4 cut(s)	154, 193, 199, 373
Hpy188III	TCNNGA	3 cut(s)	29, 205, 411
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	1 cut(s)	175
HpyAV	CCTTC	1 cut(s)	484
HpyCH4IV	ACGT	1 cut(s)	383
HpyCH4V	TGCA	2 cut(s)	332, 446
HpyF10VI	GCNNNNNNNGC	2 cut(s)	338, 347
HpyF3I	CTNAG	2 cut(s)	30, 399
HpySE526I	ACGT	1 cut(s)	383
Hsp92II	CATG	1 cut(s)	289
Kzo9I	GATC	1 cut(s)	141
LmnI	GCTCC	4 cut(s)	39, 67, 101, 338
Lsp1109I	GCAGC	3 cut(s)	162, 353, 430
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	1 cut(s)	383
MalI	GATC	1 cut(s)	143
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	1 cut(s)	141
MboII	GAAGA	2 cut(s)	213, 256
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	2 cut(s)	306, 414
MlyI	GAGTC	1 cut(s)	416
MnlI	CCTC	6 cut(s)	36, 55, 115, 329, 367, 466
MseI	TTAA	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	2 cut(s)	93, 111
MspR9I	CCNGG	3 cut(s)	13, 93, 318
MvaI	CCWGG	2 cut(s)	13, 318
MwoI	GCNNNNNNNGC	2 cut(s)	338, 347
NciI	CCSGG	1 cut(s)	93
NdeI	CATATG	1 cut(s)	469
NdeII	GATC	1 cut(s)	141
NheI	GCTAGC	1 cut(s)	212
NlaIII	CATG	1 cut(s)	289
NlaIV	GGNNCC	3 cut(s)	97, 283, 315
PfeI	GAWTC	4 cut(s)	83, 194, 218, 464
PkrI	GCNGC	4 cut(s)	69, 177, 343, 445
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
Psp124BI	GAGCTC	1 cut(s)	36
Psp6I	CCWGG	2 cut(s)	11, 316
PspGI	CCWGG	2 cut(s)	11, 316
PspN4I	GGNNCC	3 cut(s)	97, 283, 315
PspPI	GGNCC	2 cut(s)	23, 127
PstNI	CAGNNNCTG	1 cut(s)	241
PvuII	CAGCTG	1 cut(s)	344
SacI	GAGCTC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	4 cut(s)	68, 176, 342, 444
Sau3AI	GATC	1 cut(s)	141
Sau96I	GGNCC	2 cut(s)	23, 127
SchI	GAGTC	1 cut(s)	416
ScrFI	CCNGG	3 cut(s)	13, 93, 318
SduI	GDGCHC	1 cut(s)	36
SfcI	CTRYAG	1 cut(s)	345
SgrAI	CRCCGGYG	1 cut(s)	110
SinI	GGWCC	2 cut(s)	23, 127
Sse9I	AATT	2 cut(s)	306, 414
SsiI	CCGC	4 cut(s)	60, 65, 68, 279
SspMI	CTAG	1 cut(s)	213
SstI	GAGCTC	1 cut(s)	36
StyD4I	CCNGG	3 cut(s)	11, 91, 316
TaiI	ACGT	1 cut(s)	386
TaqII	GACCGA	1 cut(s)	11
TasI	AATT	2 cut(s)	306, 414
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	4 cut(s)	83, 194, 218, 464
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	1 cut(s)	242
TseI	GCWGC	3 cut(s)	175, 341, 443
TspRI	CASTG	1 cut(s)	242
VpaK11BI	GGWCC	2 cut(s)	23, 127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.