Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Forward (+)

15984000 .. 15986003

Gene Structure 2004 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG119400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGTCCGAGCACTCAAAACGACTCCGCCTTTCGTCTAGTCCCACTGAGGTTGGATCCTTCAGCTGCAAAATGTCGTCTGACTCGTCACCACCGTTAACTCACTCCATTACTCTGTCCTGTCAACCCGCCCAACCCGTCCAGATCGTCGCTGCCCCCCATATCTCCGATCCCGATTTCAGGAGTGCTATCGATTCTTTCTTGTTTAAGCAGTGGCTGAAGAACACCCAGAGTGAAAATGGGATTTTACACGGCGGTTCCATGTCTCTTACACGAGTTTTAATTCAGGGAGTGGATATGTTCGGGAAGCACATCGGTTTTCTGAAATTCCAAGCAGATGTATTCGATAAACAAACAGGGAAAAAGGTTCCAGGTATTGTGTTTGCACGAGGACCAGCTGTAGCTGTGCTTATCCTTTTAGAGTCGGAGGAGAAGACATATGCTGTTCTTACTGAGCAGGCTCGAATCCCTGTGGGAAGGATTATATTGGAGTTGCCCGCTGGAATGTTGGATGTTGACAAGGGTGATTTTCTTGGAGCTGCAATCCGTGAGGTTGAGGAGGAGACTGGTATACACCTAAAACAAGATCACATGGTGAACCTCACATCCTTCCTCGACCAATCTACTGGGTGCAGAATATTTCCTTCGCCAGGAGGCTGTGATGAAGAAATTGGCCTCTTTTTATACAGAGGGAAGGTGGATAAAGAGATTATTGAGCAGCTGCAAGGTAAAGAAACAGGTCTTTATGAACGTGGAGAGCTGATTAAGGTTCATGTGGTTCCTTATGAAAGGCTCTGGTGCATGACAGCTGATGCGAAGGTTTTGGCAGCCGTTGCCCTTTATGAAATGTCCAAGAGAGAAGGGCTCTTGCCTCCACTGGAAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

294

Amino Acids

32.38

Weight (kDa)

5.67

Isoelectric Point (pI)

56.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	130 - 264	4e-13	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	568
AciI	CCGC	4 cut(s)	25, 126, 252, 495
AclWI	GGATC	3 cut(s)	48, 61, 161
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	2 cut(s)	43, 236
AdeI	CACNNNGTG	1 cut(s)	592
AfiI	CCNNNNNNNGG	2 cut(s)	177, 647
AjnI	CCWGG	2 cut(s)	367, 646
AloI	GAACNNNNNNTCC	2 cut(s)	587, 619
AluBI	AGCT	7 cut(s)	63, 395, 401, 536, 718, 757, 806
AluI	AGCT	7 cut(s)	63, 395, 401, 536, 718, 757, 806
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	2 cut(s)	267, 554
AlwI	GGATC	3 cut(s)	48, 61, 161
AlwNI	CAGNNNCTG	1 cut(s)	214
AoxI	GGCC	1 cut(s)	670
ApeKI	GCWGC	6 cut(s)	63, 149, 536, 715, 718, 824
ApoI	RAATTY	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	389
AsuHPI	GGTGA	3 cut(s)	78, 533, 604
AvaII	GGWCC	1 cut(s)	389
BamHI	GGATCC	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	864
BauI	CACGAG	2 cut(s)	270, 384
BbsI	GAAGAC	1 cut(s)	437
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	6 cut(s)	50, 136, 523, 705, 727, 836
BceAI	ACGGC	2 cut(s)	265, 812
BciT130I	CCWGG	2 cut(s)	369, 648
BcoDI	GTCTC	2 cut(s)	267, 554
BfaI	CTAG	2 cut(s)	36, 883
BfmI	CTRYAG	1 cut(s)	396
BisI	GCNGC	6 cut(s)	64, 150, 537, 716, 719, 825
BlsI	GCNGC	6 cut(s)	65, 151, 538, 717, 720, 826
Bme1390I	CCNGG	2 cut(s)	369, 648
Bme18I	GGWCC	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	389
BmiI	GGNNCC	4 cut(s)	55, 256, 366, 777
BmrFI	CCNGG	2 cut(s)	369, 648
BmrI	ACTGGG	1 cut(s)	633
BmsI	GCATC	1 cut(s)	799
BmuI	ACTGGG	1 cut(s)	633
BpiI	GAAGAC	1 cut(s)	437
BplI	GAGNNNNNCTC	2 cut(s)	846, 878
Bsa29I	ATCGAT	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 647
Bse1I	ACTGG	3 cut(s)	568, 628, 879
BseBI	CCWGG	2 cut(s)	369, 648
BseCI	ATCGAT	1 cut(s)	189
BseGI	GGATG	2 cut(s)	514, 602
BseLI	CCNNNNNNNGG	2 cut(s)	177, 647
BseMII	CTCAG	2 cut(s)	36, 441
BseNI	ACTGG	3 cut(s)	568, 628, 879
BseRI	GAGGAG	3 cut(s)	440, 569, 572
BseXI	GCAGC	6 cut(s)	50, 136, 523, 705, 727, 836
BsgI	GTGCAG	1 cut(s)	649
BshFI	GGCC	1 cut(s)	672
BshVI	ATCGAT	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	2 cut(s)	177, 647
BsmAI	GTCTC	2 cut(s)	267, 554
BsmFI	GGGAC	1 cut(s)	24
BsnI	GGCC	1 cut(s)	672
Bsp1286I	GDGCHC	2 cut(s)	12, 864
Bsp143I	GATC	4 cut(s)	53, 141, 166, 583
BspACI	CCGC	4 cut(s)	25, 126, 252, 495
BspANI	GGCC	1 cut(s)	672
BspCNI	CTCAG	2 cut(s)	37, 442
BspDI	ATCGAT	1 cut(s)	189
BspLI	GGNNCC	4 cut(s)	55, 256, 366, 777
BspPI	GGATC	3 cut(s)	48, 61, 161
BsrI	ACTGG	3 cut(s)	568, 628, 879
BssMI	GATC	4 cut(s)	53, 141, 166, 583
BssNAI	GTATAC	1 cut(s)	569
BssSI	CACGAG	2 cut(s)	270, 384
Bst1107I	GTATAC	1 cut(s)	569
Bst2BI	CACGAG	2 cut(s)	270, 384
Bst2UI	CCWGG	2 cut(s)	369, 648
Bst4CI	ACNGT	1 cut(s)	93
BstAPI	GCANNNNNTGC	1 cut(s)	830
BstC8I	GCNNGC	2 cut(s)	456, 495
BstDEI	CTNAG	2 cut(s)	45, 450
BstENI	CCTNNNNNAGG	1 cut(s)	645
BstF5I	GGATG	2 cut(s)	514, 602
BstKTI	GATC	4 cut(s)	56, 144, 169, 586
BstMAI	GTCTC	2 cut(s)	267, 554
BstMBI	GATC	4 cut(s)	53, 141, 166, 583
BstMWI	GCNNNNNNNGC	1 cut(s)	830
BstNI	CCWGG	2 cut(s)	369, 648
BstSCI	CCNGG	2 cut(s)	367, 646
BstSFI	CTRYAG	1 cut(s)	396
BstV1I	GCAGC	6 cut(s)	50, 136, 523, 705, 727, 836
BstV2I	GAAGAC	1 cut(s)	437
BstX2I	RGATCY	1 cut(s)	53
BstXI	CCANNNNNNTGG	1 cut(s)	623
BstYI	RGATCY	1 cut(s)	53
BstZ17I	GTATAC	1 cut(s)	569
Bsu15I	ATCGAT	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	672
BsuTUI	ATCGAT	1 cut(s)	189
BtsCI	GGATG	2 cut(s)	514, 602
BtsI	GCAGTG	1 cut(s)	215
BtsIMutI	CAGTG	3 cut(s)	42, 215, 872
Cac8I	GCNNGC	2 cut(s)	456, 495
CaiI	CAGNNNCTG	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	389
ClaI	ATCGAT	1 cut(s)	189
CspCI	CAANNNNNGTGG	2 cut(s)	31, 66
CviAII	CATG	4 cut(s)	259, 589, 770, 799
DdeI	CTNAG	2 cut(s)	45, 450
DpnI	GATC	4 cut(s)	55, 143, 168, 585
DpnII	GATC	4 cut(s)	53, 141, 166, 583
DraIII	CACNNNGTG	1 cut(s)	592
EciI	GGCGGA	1 cut(s)	14
Eco24I	GRGCYC	1 cut(s)	864
Eco47I	GGWCC	1 cut(s)	389
Eco57I	CTGAAG	2 cut(s)	43, 236
EcoNI	CCTNNNNNAGG	1 cut(s)	645
EcoRII	CCWGG	2 cut(s)	367, 646
EcoT38I	GRGCYC	1 cut(s)	864
FaeI	CATG	4 cut(s)	262, 592, 773, 802
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	4 cut(s)	258, 588, 769, 798
FauI	CCCGC	2 cut(s)	133, 502
FauNDI	CATATG	1 cut(s)	436
FblI	GTMKAC	1 cut(s)	568
Fnu4HI	GCNGC	6 cut(s)	64, 150, 537, 716, 719, 825
FokI	GGATG	2 cut(s)	521, 589
FriOI	GRGCYC	1 cut(s)	864
Fsp4HI	GCNGC	6 cut(s)	64, 150, 537, 716, 719, 825
FspBI	CTAG	2 cut(s)	36, 883
GluI	GCNGC	6 cut(s)	64, 150, 537, 716, 719, 825
HaeIII	GGCC	1 cut(s)	672
Hin1II	CATG	4 cut(s)	262, 592, 773, 802
HincII	GTYRAC	3 cut(s)	96, 122, 514
HindII	GTYRAC	3 cut(s)	96, 122, 514
HinfI	GANTC	5 cut(s)	21, 80, 191, 419, 462
HpaI	GTTAAC	1 cut(s)	96
HphI	GGTGA	3 cut(s)	78, 533, 604
Hpy166II	GTNNAC	5 cut(s)	96, 122, 514, 569, 595
Hpy188I	TCNGA	5 cut(s)	7, 79, 166, 321, 424
Hpy188III	TCNNGA	4 cut(s)	139, 170, 178, 301
Hpy8I	GTNNAC	5 cut(s)	96, 122, 514, 569, 595
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	7 cut(s)	67, 468, 616, 651, 685, 808, 851
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4IV	ACGT	1 cut(s)	748
HpyCH4V	TGCA	6 cut(s)	66, 383, 539, 630, 721, 798
HpyF10VI	GCNNNNNNNGC	1 cut(s)	830
HpyF3I	CTNAG	2 cut(s)	45, 450
HpySE526I	ACGT	1 cut(s)	748
Hsp92II	CATG	4 cut(s)	262, 592, 773, 802
KspAI	GTTAAC	1 cut(s)	96
Kzo9I	GATC	4 cut(s)	53, 141, 166, 583
LmnI	GCTCC	1 cut(s)	533
Lsp1109I	GCAGC	6 cut(s)	50, 136, 523, 705, 727, 836
LweI	GCATC	1 cut(s)	799
MaeI	CTAG	2 cut(s)	36, 883
MaeII	ACGT	1 cut(s)	748
MaeIII	GTNAC	1 cut(s)	84
MalI	GATC	4 cut(s)	55, 143, 168, 585
MboI	GATC	4 cut(s)	53, 141, 166, 583
MboII	GAAGA	3 cut(s)	229, 442, 674
MflI	RGATCY	1 cut(s)	53
MhlI	GDGCHC	2 cut(s)	12, 864
MluCI	AATT	3 cut(s)	279, 323, 666
MlyI	GAGTC	3 cut(s)	15, 74, 428
MmeI	TCCRAC	3 cut(s)	31, 402, 486
MseI	TTAA	4 cut(s)	95, 204, 278, 762
MspA1I	CMGCKG	5 cut(s)	63, 395, 497, 718, 806
MspR9I	CCNGG	2 cut(s)	369, 648
MvaI	CCWGG	2 cut(s)	369, 648
MwoI	GCNNNNNNNGC	1 cut(s)	830
NdeI	CATATG	1 cut(s)	436
NdeII	GATC	4 cut(s)	53, 141, 166, 583
NlaIII	CATG	4 cut(s)	262, 592, 773, 802
NlaIV	GGNNCC	4 cut(s)	55, 256, 366, 777
NmuCI	GTSAC	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	2 cut(s)	80, 89
PfeI	GAWTC	2 cut(s)	191, 462
PkrI	GCNGC	6 cut(s)	65, 151, 538, 717, 720, 826
PleI	GAGTC	3 cut(s)	15, 74, 427
PpsI	GAGTC	3 cut(s)	15, 74, 427
Psp6I	CCWGG	2 cut(s)	367, 646
PspGI	CCWGG	2 cut(s)	367, 646
PspN4I	GGNNCC	4 cut(s)	55, 256, 366, 777
PspPI	GGNCC	1 cut(s)	389
PstNI	CAGNNNCTG	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	53
PvuII	CAGCTG	4 cut(s)	63, 395, 718, 806
SaqAI	TTAA	4 cut(s)	95, 204, 278, 762
SatI	GCNGC	6 cut(s)	64, 150, 537, 716, 719, 825
Sau3AI	GATC	4 cut(s)	53, 141, 166, 583
Sau96I	GGNCC	1 cut(s)	389
SchI	GAGTC	3 cut(s)	15, 74, 428
ScrFI	CCNGG	2 cut(s)	369, 648
SduI	GDGCHC	2 cut(s)	12, 864
SfaNI	GCATC	1 cut(s)	799
SfcI	CTRYAG	1 cut(s)	396
SinI	GGWCC	1 cut(s)	389
Sse9I	AATT	3 cut(s)	279, 323, 666
SsiI	CCGC	4 cut(s)	25, 126, 252, 495
SspI	AATATT	1 cut(s)	636
SspMI	CTAG	2 cut(s)	36, 883
StyD4I	CCNGG	2 cut(s)	367, 646
TaaI	ACNGT	1 cut(s)	93
TaiI	ACGT	1 cut(s)	751
TaqI	TCGA	4 cut(s)	189, 342, 460, 612
TasI	AATT	3 cut(s)	279, 323, 666
TfiI	GAWTC	2 cut(s)	191, 462
Tru1I	TTAA	4 cut(s)	95, 204, 278, 762
Tru9I	TTAA	4 cut(s)	95, 204, 278, 762
TscAI	CASTG	3 cut(s)	49, 215, 879
TseFI	GTSAC	1 cut(s)	84
TseI	GCWGC	6 cut(s)	63, 149, 536, 715, 718, 824
Tsp45I	GTSAC	1 cut(s)	84
TspDTI	ATGAA	5 cut(s)	675, 758, 759, 798, 855
TspGWI	ACGGA	1 cut(s)	533
TspRI	CASTG	3 cut(s)	49, 215, 879
VpaK11BI	GGWCC	1 cut(s)	389
XagI	CCTNNNNNAGG	1 cut(s)	645
XapI	RAATTY	1 cut(s)	323
XcmI	CCANNNNNNNNNTGG	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	568
XspI	CTAG	2 cut(s)	36, 883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.