Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Reverse (-)

48247113 .. 48248256

Gene Structure 1144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG260600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGCATCTTGCAGGAGTGCTATCGATTCTTCTTTGTTTAAGCAGTGGCTGAAGAACACCCAGAGTGAAAATGGGATTTTACACGGCGGTTCCATGTCTCTTACACGAGTTCTAATTCAGGTTCCAGGTATTGTGTTTGCACGAGGAGCAGCTGTAGCTGTGCTTATCCTTTTGAAGTCAGAGGAGATGACATATGCTGTTCTTACTGAGCAGAGGATGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

74

Amino Acids

8.1

Weight (kDa)

7.94

Isoelectric Point (pI)

54.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	87
AcuI	CTGAAG	1 cut(s)	71
AgsI	TTSAA	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	2 cut(s)	152, 158
AluI	AGCT	2 cut(s)	152, 158
Alw26I	GTCTC	1 cut(s)	102
AlwNI	CAGNNNCTG	1 cut(s)	49
ApeKI	GCWGC	1 cut(s)	149
BauI	CACGAG	2 cut(s)	105, 141
BbvI	GCAGC	1 cut(s)	161
BccI	CCATC	1 cut(s)	211
BceAI	ACGGC	1 cut(s)	100
BciT130I	CCWGG	1 cut(s)	126
BcoDI	GTCTC	1 cut(s)	102
BfmI	CTRYAG	1 cut(s)	153
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	126
BmiI	GGNNCC	2 cut(s)	91, 123
BmrFI	CCNGG	1 cut(s)	126
BmsI	GCATC	1 cut(s)	14
Bsa29I	ATCGAT	1 cut(s)	24
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
BseBI	CCWGG	1 cut(s)	126
BseCI	ATCGAT	1 cut(s)	24
BseGI	GGATG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	198
BseRI	GAGGAG	2 cut(s)	159, 197
BseXI	GCAGC	1 cut(s)	161
BshVI	ATCGAT	1 cut(s)	24
BsmAI	GTCTC	1 cut(s)	102
BspACI	CCGC	1 cut(s)	87
BspCNI	CTCAG	1 cut(s)	199
BspDI	ATCGAT	1 cut(s)	24
BspLI	GGNNCC	2 cut(s)	91, 123
BssSI	CACGAG	2 cut(s)	105, 141
Bst2BI	CACGAG	2 cut(s)	105, 141
Bst2UI	CCWGG	1 cut(s)	126
BstDEI	CTNAG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	222
BstMAI	GTCTC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 155
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	124
BstSFI	CTRYAG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	161
Bsu15I	ATCGAT	1 cut(s)	24
BsuTUI	ATCGAT	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	222
BtsI	GCAGTG	1 cut(s)	50
BtsIMutI	CAGTG	1 cut(s)	50
CaiI	CAGNNNCTG	1 cut(s)	49
ClaI	ATCGAT	1 cut(s)	24
CviAII	CATG	1 cut(s)	94
CviJI	RGCY	3 cut(s)	49, 152, 158
CviKI_1	RGCY	3 cut(s)	49, 152, 158
DdeI	CTNAG	1 cut(s)	207
Eco57I	CTGAAG	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	124
FaeI	CATG	1 cut(s)	97
FaiI	YATR	3 cut(s)	95, 193, 195
FatI	CATG	1 cut(s)	93
FauNDI	CATATG	1 cut(s)	193
Fnu4HI	GCNGC	1 cut(s)	150
Fsp4HI	GCNGC	1 cut(s)	150
GluI	GCNGC	1 cut(s)	150
Hin1II	CATG	1 cut(s)	97
HinfI	GANTC	1 cut(s)	26
Hpy188I	TCNGA	1 cut(s)	181
HpyCH4V	TGCA	2 cut(s)	12, 140
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 155
HpyF3I	CTNAG	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	97
LmnI	GCTCC	1 cut(s)	146
LpnPI	CCDG	4 cut(s)	74, 104, 111, 138
Lsp1109I	GCAGC	1 cut(s)	161
LweI	GCATC	1 cut(s)	14
MboII	GAAGA	2 cut(s)	21, 64
MluCI	AATT	1 cut(s)	114
MnlI	CCTC	3 cut(s)	137, 175, 207
MseI	TTAA	1 cut(s)	39
MspA1I	CMGCKG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	2 cut(s)	146, 155
NdeI	CATATG	1 cut(s)	193
NlaIII	CATG	1 cut(s)	97
NlaIV	GGNNCC	2 cut(s)	91, 123
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	2 cut(s)	91, 123
PstNI	CAGNNNCTG	1 cut(s)	49
PvuII	CAGCTG	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	1 cut(s)	150
ScrFI	CCNGG	1 cut(s)	126
SetI	ASST	4 cut(s)	123, 130, 154, 160
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	153
Sse9I	AATT	1 cut(s)	114
SsiI	CCGC	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	124
TaqI	TCGA	1 cut(s)	24
TasI	AATT	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	1 cut(s)	50
TseI	GCWGC	1 cut(s)	149
TspRI	CASTG	1 cut(s)	50
XcmI	CCANNNNNNNNNTGG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.