Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Reverse (-)

15042399 .. 15044870

Gene Structure 2472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG186900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTTTGGAAAGAGGTTTGGGTTTCTGAAGTTCGAAGCAGATGTGATTAATAAAGAAACAGGGAAAAAGGTTCCAGGTGTTGTGTTTGCACGCGGACCGGCTGTAGCTGTGCTTATACTTTTGGAATCGGAGGGCAAGACTTATGCTGTTCTTACTGAACAGGCTAGAGTACCTGTTGGAAGGATCATACTGGAGTTGCCTGCTGGAATGTTGGATGATGACAAGGGTGATTTTCTCGGCACCGCAATCCGTGAGGTGGAAGAAGAGACTGGCATATGCCTAAAACAAGAAGACATGGTGGACCTCACAGCCTTCCTCGACCAATCTACTGGATGCAGAATCTTTCCTTCTCCTGGAGGGTGTGATGAAGAACTCAGCCTCTATCTGTACAGAGGGCAGGTGGATAAAGAGATTATTGATCAGCTGCAAGGTAAAGAAACAGGTCTTCGTGACCATGGAGAGCTGATTAGGGTTCGTGTGCTCCCTTATGAAAAGCTCTGGCGCATGACAGCCGATGCAAAGGTTTTAACAGCCGTCGCACTCTATGAAATGGCAAAAAGAGAAGGGCTCTTGCCTCCCCTGAAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

196

Amino Acids

21.76

Weight (kDa)

5.04

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	31 - 172	8e-15	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	388
Acc36I	ACCTGC	1 cut(s)	388
AccB1I	GGYRCC	1 cut(s)	239
AccII	CGCG	1 cut(s)	93
AciI	CCGC	2 cut(s)	93, 243
AclWI	GGATC	1 cut(s)	191
AcuI	CTGAAG	1 cut(s)	47
AfaI	GTAC	2 cut(s)	171, 389
AfiI	CCNNNNNNNGG	2 cut(s)	256, 353
AjnI	CCWGG	2 cut(s)	73, 352
AluBI	AGCT	4 cut(s)	107, 424, 463, 496
AluI	AGCT	4 cut(s)	107, 424, 463, 496
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	1 cut(s)	260
AlwI	GGATC	1 cut(s)	191
ApeKI	GCWGC	1 cut(s)	424
AseI	ATTAAT	1 cut(s)	48
AspLEI	GCGC	1 cut(s)	504
AspS9I	GGNCC	2 cut(s)	95, 301
AsuHPI	GGTGA	1 cut(s)	239
AsuII	TTCGAA	1 cut(s)	33
AvaII	GGWCC	2 cut(s)	95, 301
BanI	GGYRCC	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	570
BbsI	GAAGAC	2 cut(s)	297, 437
Bbv12I	GWGCWC	1 cut(s)	483
BbvI	GCAGC	1 cut(s)	411
BceAI	ACGGC	1 cut(s)	518
BciT130I	CCWGG	2 cut(s)	75, 354
BclI	TGATCA	1 cut(s)	418
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	1 cut(s)	165
BfmI	CTRYAG	1 cut(s)	102
BfuAI	ACCTGC	1 cut(s)	388
BisI	GCNGC	1 cut(s)	425
BlsI	GCNGC	1 cut(s)	426
Bme1390I	CCNGG	2 cut(s)	75, 354
Bme18I	GGWCC	2 cut(s)	95, 301
BmgT120I	GGNCC	2 cut(s)	95, 301
BmiI	GGNNCC	2 cut(s)	72, 241
BmrFI	CCNGG	2 cut(s)	75, 354
BmsI	GCATC	2 cut(s)	323, 505
BpiI	GAAGAC	2 cut(s)	297, 437
BplI	GAGNNNNNCTC	2 cut(s)	552, 584
BpmI	CTGGAG	2 cut(s)	212, 375
Bpu14I	TTCGAA	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	454
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 353
Bse118I	RCCGGY	1 cut(s)	97
Bse1I	ACTGG	3 cut(s)	195, 274, 334
BseBI	CCWGG	2 cut(s)	75, 354
BseDI	CCNNGG	1 cut(s)	454
BseGI	GGATG	2 cut(s)	220, 338
BseLI	CCNNNNNNNGG	2 cut(s)	256, 353
BseMII	CTCAG	1 cut(s)	388
BseNI	ACTGG	3 cut(s)	195, 274, 334
BseXI	GCAGC	1 cut(s)	411
Bsh1236I	CGCG	1 cut(s)	93
BshNI	GGYRCC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	483
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	2 cut(s)	256, 353
BsmAI	GTCTC	1 cut(s)	260
Bsp119I	TTCGAA	1 cut(s)	33
Bsp1286I	GDGCHC	2 cut(s)	483, 570
Bsp1407I	TGTACA	1 cut(s)	387
Bsp143I	GATC	2 cut(s)	183, 418
Bsp19I	CCATGG	1 cut(s)	454
BspACI	CCGC	2 cut(s)	93, 243
BspCNI	CTCAG	1 cut(s)	387
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	72, 241
BspMI	ACCTGC	1 cut(s)	388
BspPI	GGATC	1 cut(s)	191
BspT104I	TTCGAA	1 cut(s)	33
BspT107I	GGYRCC	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	97
BsrGI	TGTACA	1 cut(s)	387
BsrI	ACTGG	3 cut(s)	195, 274, 334
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	454
BssMI	GATC	2 cut(s)	183, 418
BssT1I	CCWWGG	1 cut(s)	454
Bst2UI	CCWGG	2 cut(s)	75, 354
Bst6I	CTCTTC	1 cut(s)	258
BstAUI	TGTACA	1 cut(s)	387
BstBI	TTCGAA	1 cut(s)	33
BstC8I	GCNNGC	2 cut(s)	91, 201
BstDEI	CTNAG	1 cut(s)	374
BstDSI	CCRYGG	1 cut(s)	454
BstF5I	GGATG	2 cut(s)	220, 338
BstFNI	CGCG	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	504
BstKTI	GATC	2 cut(s)	186, 421
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	2 cut(s)	183, 418
BstNI	CCWGG	2 cut(s)	75, 354
BstSCI	CCNGG	2 cut(s)	73, 352
BstSFI	CTRYAG	1 cut(s)	102
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	411
BstV2I	GAAGAC	2 cut(s)	297, 437
BstXI	CCANNNNNNTGG	1 cut(s)	329
BtgI	CCRYGG	1 cut(s)	454
BtsCI	GGATG	2 cut(s)	220, 338
BveI	ACCTGC	1 cut(s)	388
Cac8I	GCNNGC	2 cut(s)	91, 201
CfoI	GCGC	1 cut(s)	504
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	2 cut(s)	95, 301
CpoI	CGGWCCG	1 cut(s)	95
Csp6I	GTAC	2 cut(s)	170, 388
CspI	CGGWCCG	1 cut(s)	95
CviAII	CATG	4 cut(s)	295, 455, 505, 588
CviQI	GTAC	2 cut(s)	170, 388
DdeI	CTNAG	1 cut(s)	374
DpnI	GATC	2 cut(s)	185, 420
DpnII	GATC	2 cut(s)	183, 418
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	454
Eco24I	GRGCYC	1 cut(s)	570
Eco47I	GGWCC	2 cut(s)	95, 301
Eco57I	CTGAAG	1 cut(s)	47
EcoRII	CCWGG	2 cut(s)	73, 352
EcoT14I	CCWWGG	1 cut(s)	454
EcoT38I	GRGCYC	1 cut(s)	570
ErhI	CCWWGG	1 cut(s)	454
FaeI	CATG	4 cut(s)	298, 458, 508, 591
FatI	CATG	4 cut(s)	294, 454, 504, 587
FauNDI	CATATG	1 cut(s)	275
FbaI	TGATCA	1 cut(s)	418
Fnu4HI	GCNGC	1 cut(s)	425
FokI	GGATG	2 cut(s)	227, 345
FriOI	GRGCYC	1 cut(s)	570
Fsp4HI	GCNGC	1 cut(s)	425
FspBI	CTAG	1 cut(s)	165
GlaI	GCGC	1 cut(s)	503
GluI	GCNGC	1 cut(s)	425
GsuI	CTGGAG	2 cut(s)	212, 375
HapII	CCGG	1 cut(s)	98
HhaI	GCGC	1 cut(s)	504
Hin1II	CATG	4 cut(s)	298, 458, 508, 591
Hin6I	GCGC	1 cut(s)	502
HinP1I	GCGC	1 cut(s)	502
HinfI	GANTC	2 cut(s)	125, 339
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	2 cut(s)	27, 130
Hpy188III	TCNNGA	1 cut(s)	449
Hpy8I	GTNNAC	1 cut(s)	301
Hpy99I	CGWCG	1 cut(s)	539
HpyAV	CCTTC	4 cut(s)	174, 322, 357, 557
HpyCH4V	TGCA	4 cut(s)	89, 336, 427, 518
HpyF3I	CTNAG	1 cut(s)	374
Hsp92II	CATG	4 cut(s)	298, 458, 508, 591
HspAI	GCGC	1 cut(s)	502
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	2 cut(s)	183, 418
LmnI	GCTCC	1 cut(s)	486
Lsp1109I	GCAGC	1 cut(s)	411
LweI	GCATC	2 cut(s)	323, 505
MaeI	CTAG	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	2 cut(s)	185, 420
MboI	GATC	2 cut(s)	183, 418
MboII	GAAGA	5 cut(s)	272, 275, 302, 380, 437
MhlI	GDGCHC	2 cut(s)	483, 570
MmeI	TCCRAC	2 cut(s)	157, 192
MnlI	CCTC	9 cut(s)	6, 124, 247, 314, 326, 350, 386, 389, 585
MseI	TTAA	2 cut(s)	48, 527
MspA1I	CMGCKG	1 cut(s)	424
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	2 cut(s)	75, 354
MvaI	CCWGG	2 cut(s)	75, 354
MvnI	CGCG	1 cut(s)	93
NcoI	CCATGG	1 cut(s)	454
NdeI	CATATG	1 cut(s)	275
NdeII	GATC	2 cut(s)	183, 418
NlaIII	CATG	4 cut(s)	298, 458, 508, 591
NlaIV	GGNNCC	2 cut(s)	72, 241
NmeAIII	GCCGAG	1 cut(s)	216
NmuCI	GTSAC	1 cut(s)	449
NspV	TTCGAA	1 cut(s)	33
PaqCI	CACCTGC	1 cut(s)	388
PfeI	GAWTC	2 cut(s)	125, 339
PfoI	TCCNGGA	1 cut(s)	352
PkrI	GCNGC	1 cut(s)	426
PshBI	ATTAAT	1 cut(s)	48
Psp6I	CCWGG	2 cut(s)	73, 352
PspGI	CCWGG	2 cut(s)	73, 352
PspN4I	GGNNCC	2 cut(s)	72, 241
PspPI	GGNCC	2 cut(s)	95, 301
PvuII	CAGCTG	1 cut(s)	424
RsaI	GTAC	2 cut(s)	171, 389
RsaNI	GTAC	2 cut(s)	170, 388
Rsr2I	CGGWCCG	1 cut(s)	95
RsrII	CGGWCCG	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	48, 527
SatI	GCNGC	1 cut(s)	425
Sau3AI	GATC	2 cut(s)	183, 418
Sau96I	GGNCC	2 cut(s)	95, 301
ScrFI	CCNGG	2 cut(s)	75, 354
SduI	GDGCHC	2 cut(s)	483, 570
SfaNI	GCATC	2 cut(s)	323, 505
SfcI	CTRYAG	1 cut(s)	102
SfuI	TTCGAA	1 cut(s)	33
SinI	GGWCC	2 cut(s)	95, 301
SsiI	CCGC	2 cut(s)	93, 243
SspMI	CTAG	1 cut(s)	165
StyD4I	CCNGG	2 cut(s)	73, 352
StyI	CCWWGG	1 cut(s)	454
TaqI	TCGA	2 cut(s)	33, 318
TatI	WGTACW	1 cut(s)	387
TfiI	GAWTC	2 cut(s)	125, 339
Tru1I	TTAA	2 cut(s)	48, 527
Tru9I	TTAA	2 cut(s)	48, 527
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	1 cut(s)	424
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	3 cut(s)	381, 504, 561
TspGWI	ACGGA	1 cut(s)	239
VpaK11BI	GGWCC	2 cut(s)	95, 301
VspI	ATTAAT	1 cut(s)	48
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.