Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Reverse (-)

17423441 .. 17426541

Gene Structure 3101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG188300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTCGTTGATCACCAGAACCACACTCACACTCCCCAGAACACGCCTCGCCCTTCGATCCTTCACCTGCAAAACGTCATCCGACCCGCCACCGTTGATTCGCTCCCTCACTCTCCCGAGTCAGCTCGCCGCCGAGCCCGTCCAGATCGTCGCCGCCCCCCACATCTCCTCCTCCCAGTTCAGGAGCGCTATTGATTCGTCTTTGTTTAAGCAGTGGCTGAAGAACATGGAGAGTGAAAGTGGGATTCTACGCGACGGTTCTTTGGCTCTGAAACGAGTTCTAATTCAGGGTGTGGATATGTTTGAAAAGAGGATTGGGTTTCTGAAGTTTGAAGCCGATGTGGTTGATAAAGAAACAGGGAAAAAGGTTCCAGGTATTGTGTTTGCACGCGGACCGGCTGTAGCTGTGCTTATACTTTTGGAATCGGAGGGCAAGGCTTATGCTGTTCTTACTGAACAGGTTAGAGTACCTGTTGGAAGGATCATACTGGAGTTGCCTGCTGGAATGTTGGATGATGACAAGGGTGATTTTCTCGGCACCGCAATCCGTGAGGTGGAAGAAGAGATTGGCATATGCCTAAAACAAGAAGACATGGTGGACCTCACAGCCTTCCTCGACCAATCTACTGGATGCAGAATATTTCCTTCTCCTGTAAGTTGGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019144 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0080041 GO:0080042

KEGG Pathways

Metabolic & Signaling

ko00051 ko00230 ko00500 ko01100 ko01110 map00051 map00230 map00500 map01100 map01110

Pfam Domains

Protein Families

NUDIX

Protein Analysis

221

Amino Acids

24.24

Weight (kDa)

5.61

Isoelectric Point (pI)

56.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	131 - 206	1.2e-09	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	74
Acc36I	ACCTGC	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	536
AccII	CGCG	2 cut(s)	252, 390
AciI	CCGC	5 cut(s)	86, 129, 153, 390, 540
AclWI	GGATC	2 cut(s)	51, 488
AcuI	CTGAAG	2 cut(s)	239, 344
AfaI	GTAC	1 cut(s)	468
AfeI	AGCGCT	1 cut(s)	187
AfiI	CCNNNNNNNGG	2 cut(s)	180, 553
AgsI	TTSAA	2 cut(s)	305, 332
AjnI	CCWGG	1 cut(s)	370
AjuI	GAANNNNNNNTTGG	4 cut(s)	297, 329, 549, 581
AluBI	AGCT	2 cut(s)	124, 404
AluI	AGCT	2 cut(s)	124, 404
AlwI	GGATC	2 cut(s)	51, 488
AlwNI	CAGNNNCTG	1 cut(s)	217
Ama87I	CYCGRG	1 cut(s)	115
Aor51HI	AGCGCT	1 cut(s)	187
AoxI	GGCC	1 cut(s)	659
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	2 cut(s)	392, 598
AsuHPI	GGTGA	3 cut(s)	4, 55, 536
AvaI	CYCGRG	1 cut(s)	115
AvaII	GGWCC	2 cut(s)	392, 598
BanI	GGYRCC	1 cut(s)	536
BanII	GRGCYC	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	594
BciT130I	CCWGG	1 cut(s)	372
BclI	TGATCA	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	399
BfoI	RGCGCY	1 cut(s)	189
BfuAI	ACCTGC	1 cut(s)	74
BisI	GCNGC	2 cut(s)	129, 153
BlsI	GCNGC	2 cut(s)	130, 154
Bme1390I	CCNGG	1 cut(s)	372
Bme18I	GGWCC	2 cut(s)	392, 598
BmeT110I	CYCGRG	1 cut(s)	115
BmgT120I	GGNCC	2 cut(s)	392, 598
BmiI	GGNNCC	2 cut(s)	369, 538
BmrFI	CCNGG	1 cut(s)	372
BmrI	ACTGGG	1 cut(s)	169
BmsI	GCATC	1 cut(s)	620
BmuI	ACTGGG	1 cut(s)	169
BpiI	GAAGAC	1 cut(s)	594
BpmI	CTGGAG	1 cut(s)	509
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 152, 182
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 553
Bse118I	RCCGGY	1 cut(s)	394
Bse1I	ACTGG	3 cut(s)	175, 492, 631
BseBI	CCWGG	1 cut(s)	372
BseGI	GGATG	3 cut(s)	77, 517, 635
BseLI	CCNNNNNNNGG	2 cut(s)	180, 553
BseNI	ACTGG	3 cut(s)	175, 492, 631
BseRI	GAGGAG	2 cut(s)	157, 160
Bsh1236I	CGCG	2 cut(s)	252, 390
BshFI	GGCC	1 cut(s)	661
BshNI	GGYRCC	1 cut(s)	536
BsiHKCI	CYCGRG	1 cut(s)	115
BsiSI	CCGG	1 cut(s)	395
BslI	CCNNNNNNNGG	2 cut(s)	180, 553
BsnI	GGCC	1 cut(s)	661
BsoBI	CYCGRG	1 cut(s)	115
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	4 cut(s)	9, 56, 144, 480
BspACI	CCGC	5 cut(s)	86, 129, 153, 390, 540
BspANI	GGCC	1 cut(s)	661
BspFNI	CGCG	2 cut(s)	252, 390
BspLI	GGNNCC	2 cut(s)	369, 538
BspMI	ACCTGC	1 cut(s)	74
BspPI	GGATC	2 cut(s)	51, 488
BspT107I	GGYRCC	1 cut(s)	536
BsrFI	RCCGGY	1 cut(s)	394
BsrI	ACTGG	3 cut(s)	175, 492, 631
BssAI	RCCGGY	1 cut(s)	394
BssMI	GATC	4 cut(s)	9, 56, 144, 480
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	2 cut(s)	93, 257
Bst6I	CTCTTC	1 cut(s)	555
BstC8I	GCNNGC	3 cut(s)	126, 388, 498
BstF5I	GGATG	3 cut(s)	77, 517, 635
BstFNI	CGCG	2 cut(s)	252, 390
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	4 cut(s)	12, 59, 147, 483
BstMBI	GATC	4 cut(s)	9, 56, 144, 480
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	370
BstSFI	CTRYAG	1 cut(s)	399
BstUI	CGCG	2 cut(s)	252, 390
BstV2I	GAAGAC	1 cut(s)	594
BstXI	CCANNNNNNTGG	1 cut(s)	626
BsuRI	GGCC	1 cut(s)	661
BtsCI	GGATG	3 cut(s)	77, 517, 635
BtsI	GCAGTG	1 cut(s)	218
BtsIMutI	CAGTG	1 cut(s)	218
BveI	ACCTGC	1 cut(s)	74
Cac8I	GCNNGC	3 cut(s)	126, 388, 498
CaiI	CAGNNNCTG	1 cut(s)	217
CfoI	GCGC	1 cut(s)	188
Cfr10I	RCCGGY	1 cut(s)	394
Cfr13I	GGNCC	2 cut(s)	392, 598
CpoI	CGGWCCG	1 cut(s)	392
Csp6I	GTAC	1 cut(s)	467
CspI	CGGWCCG	1 cut(s)	392
CviAII	CATG	2 cut(s)	226, 592
CviQI	GTAC	1 cut(s)	467
DpnI	GATC	4 cut(s)	11, 58, 146, 482
DpnII	GATC	4 cut(s)	9, 56, 144, 480
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
Eco24I	GRGCYC	1 cut(s)	138
Eco47I	GGWCC	2 cut(s)	392, 598
Eco47III	AGCGCT	1 cut(s)	187
Eco57I	CTGAAG	2 cut(s)	239, 344
Eco88I	CYCGRG	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	138
FaeI	CATG	2 cut(s)	229, 595
FaiI	YATR	8 cut(s)	227, 299, 413, 441, 485, 572, 574, 593
FalI	AAGNNNNNCTT	1 cut(s)	646
FatI	CATG	2 cut(s)	225, 591
FauI	CCCGC	1 cut(s)	93
FauNDI	CATATG	1 cut(s)	572
FbaI	TGATCA	1 cut(s)	9
Fnu4HI	GCNGC	2 cut(s)	129, 153
FokI	GGATG	3 cut(s)	64, 524, 642
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	2 cut(s)	129, 153
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	2 cut(s)	129, 153
GsuI	CTGGAG	1 cut(s)	509
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	661
HapII	CCGG	1 cut(s)	395
HhaI	GCGC	1 cut(s)	188
Hin1II	CATG	2 cut(s)	229, 595
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HinfI	GANTC	5 cut(s)	97, 118, 194, 244, 422
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	3 cut(s)	4, 55, 536
Hpy166II	GTNNAC	1 cut(s)	598
Hpy188I	TCNGA	4 cut(s)	82, 270, 324, 427
Hpy188III	TCNNGA	3 cut(s)	115, 142, 181
Hpy8I	GTNNAC	1 cut(s)	598
Hpy99I	CGWCG	2 cut(s)	152, 257
HpyAV	CCTTC	5 cut(s)	62, 70, 471, 619, 654
HpyCH4III	ACNGT	2 cut(s)	93, 257
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	3 cut(s)	69, 386, 633
HpySE526I	ACGT	1 cut(s)	74
Hsp92II	CATG	2 cut(s)	229, 595
HspAI	GCGC	1 cut(s)	186
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	4 cut(s)	9, 56, 144, 480
LmnI	GCTCC	2 cut(s)	107, 183
LweI	GCATC	1 cut(s)	620
MaeII	ACGT	1 cut(s)	74
MalI	GATC	4 cut(s)	11, 58, 146, 482
MboI	GATC	4 cut(s)	9, 56, 144, 480
MboII	GAAGA	4 cut(s)	232, 569, 572, 599
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	1 cut(s)	282
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	3 cut(s)	105, 454, 489
MnlI	CCTC	9 cut(s)	56, 116, 178, 181, 303, 421, 544, 611, 623
MseI	TTAA	2 cut(s)	207, 664
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	372
MvnI	CGCG	2 cut(s)	252, 390
NdeI	CATATG	1 cut(s)	572
NdeII	GATC	4 cut(s)	9, 56, 144, 480
NlaIII	CATG	2 cut(s)	229, 595
NlaIV	GGNNCC	2 cut(s)	369, 538
NmeAIII	GCCGAG	2 cut(s)	157, 513
PaqCI	CACCTGC	1 cut(s)	74
PfeI	GAWTC	4 cut(s)	97, 194, 244, 422
PkrI	GCNGC	2 cut(s)	130, 154
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	2 cut(s)	369, 538
PspPI	GGNCC	2 cut(s)	392, 598
PstNI	CAGNNNCTG	1 cut(s)	217
RsaI	GTAC	1 cut(s)	468
RsaNI	GTAC	1 cut(s)	467
Rsr2I	CGGWCCG	1 cut(s)	392
RsrII	CGGWCCG	1 cut(s)	392
SaqAI	TTAA	2 cut(s)	207, 664
SatI	GCNGC	2 cut(s)	129, 153
Sau3AI	GATC	4 cut(s)	9, 56, 144, 480
Sau96I	GGNCC	2 cut(s)	392, 598
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	372
SduI	GDGCHC	1 cut(s)	138
SfaNI	GCATC	1 cut(s)	620
SfcI	CTRYAG	1 cut(s)	399
SinI	GGWCC	2 cut(s)	392, 598
Sse9I	AATT	1 cut(s)	282
SsiI	CCGC	5 cut(s)	86, 129, 153, 390, 540
SspI	AATATT	1 cut(s)	639
StyD4I	CCNGG	1 cut(s)	370
TaaI	ACNGT	2 cut(s)	93, 257
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	2 cut(s)	55, 615
TasI	AATT	1 cut(s)	282
TauI	GCSGC	2 cut(s)	131, 155
TfiI	GAWTC	4 cut(s)	97, 194, 244, 422
Tru1I	TTAA	2 cut(s)	207, 664
Tru9I	TTAA	2 cut(s)	207, 664
TscAI	CASTG	1 cut(s)	218
TspGWI	ACGGA	1 cut(s)	536
TspRI	CASTG	1 cut(s)	218
VpaK11BI	GGWCC	2 cut(s)	392, 598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.