Rh1DG074600

Nudix hydrolase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
13759127 .. 13761079
1953 bp
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UTR
Exon/CDS
Intron
Rh1DG074600.1

Sequence Viewer

Length: 342 bp
ATGTCGTCTGACTCGTCACCACCGTTAACTTACTCCATTACTCTATCCTGTCAACCCGTCCAGATCGTCGCTGCCCCCCATATCTCTGATTCCGATTTCAGGAGTGCTATCGATTCTTCTTTGTTTAAGCAGTGGCTGAAGAACACCCAGAGTGAAAATGGGATTTTACACGGCGGTTCCATGTCTCTTACACGAGTTCTAATTCAGTTTCATTTAAGCTCTATGACTTGGATAACACGGGCTTTATTGAGCACCAAGAGGTATTTCGTGTTCAGAGGGATATTACCACCACATTTCCAAGTTTTGTATTTAATTCAGAGGTTGATGAATTCGGAGAGATGA

Protein Analysis

113

Amino Acids

12.84

Weight (kDa)

9.74

Isoelectric Point (pI)

57.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 174
AcsI RAATTY 1 cut(s) 328
AcuI CTGAAG 1 cut(s) 158
AfiI CCNNNNNNNGG 1 cut(s) 99
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
AluBI AGCT 1 cut(s) 219
AluI AGCT 1 cut(s) 219
Alw21I GWGCWC 1 cut(s) 254
Alw26I GTCTC 1 cut(s) 189
AlwNI CAGNNNCTG 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 1 cut(s) 328
AsuHPI GGTGA 1 cut(s) 9
BauI CACGAG 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 254
BbvI GCAGC 1 cut(s) 58
BceAI ACGGC 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 189
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BmiI GGNNCC 1 cut(s) 178
Bsa29I ATCGAT 1 cut(s) 111
Bsc4I CCNNNNNNNGG 1 cut(s) 99
BseCI ATCGAT 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 99
BseXI GCAGC 1 cut(s) 58
BshVI ATCGAT 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 254
BslI CCNNNNNNNGG 1 cut(s) 99
BsmAI GTCTC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 254
Bsp143I GATC 1 cut(s) 63
BspACI CCGC 1 cut(s) 174
BspDI ATCGAT 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 178
BssMI GATC 1 cut(s) 63
BssSI CACGAG 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 24
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 58
Bsu15I ATCGAT 1 cut(s) 111
BsuTUI ATCGAT 1 cut(s) 111
BtsI GCAGTG 1 cut(s) 137
BtsIMutI CAGTG 1 cut(s) 137
CaiI CAGNNNCTG 1 cut(s) 136
ClaI ATCGAT 1 cut(s) 111
CviAII CATG 1 cut(s) 181
CviJI RGCY 3 cut(s) 136, 219, 242
CviKI_1 RGCY 3 cut(s) 136, 219, 242
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
Eco57I CTGAAG 1 cut(s) 158
EcoRI GAATTC 1 cut(s) 328
FaeI CATG 1 cut(s) 184
FaiI YATR 3 cut(s) 81, 182, 224
FatI CATG 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 72
GluI GCNGC 1 cut(s) 72
Hin1II CATG 1 cut(s) 184
HincII GTYRAC 2 cut(s) 27, 53
HindII GTYRAC 2 cut(s) 27, 53
HinfI GANTC 3 cut(s) 11, 89, 113
HpaI GTTAAC 1 cut(s) 27
HphI GGTGA 1 cut(s) 9
Hpy166II GTNNAC 2 cut(s) 27, 53
Hpy188I TCNGA 6 cut(s) 10, 88, 94, 275, 318, 334
Hpy188III TCNNGA 2 cut(s) 61, 100
Hpy8I GTNNAC 2 cut(s) 27, 53
Hpy99I CGWCG 1 cut(s) 71
HpyCH4III ACNGT 1 cut(s) 24
Hsp92II CATG 1 cut(s) 184
KspAI GTTAAC 1 cut(s) 27
Kzo9I GATC 1 cut(s) 63
LpnPI CCDG 4 cut(s) 61, 74, 85, 161
Lsp1109I GCAGC 1 cut(s) 58
MaeIII GTNAC 1 cut(s) 15
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 2 cut(s) 108, 151
MhlI GDGCHC 1 cut(s) 254
MluCI AATT 3 cut(s) 201, 312, 328
MlyI GAGTC 1 cut(s) 5
MnlI CCTC 3 cut(s) 252, 269, 312
MseI TTAA 4 cut(s) 26, 126, 215, 311
NdeII GATC 1 cut(s) 63
NlaIII CATG 1 cut(s) 184
NlaIV GGNNCC 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 15
PcsI WCGNNNNNNNCGW 2 cut(s) 11, 20
PfeI GAWTC 2 cut(s) 89, 113
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 1 cut(s) 5
PpsI GAGTC 1 cut(s) 5
PspN4I GGNNCC 1 cut(s) 178
PsrI GAACNNNNNNTAC 2 cut(s) 254, 286
PstNI CAGNNNCTG 1 cut(s) 136
SaqAI TTAA 4 cut(s) 26, 126, 215, 311
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 1 cut(s) 63
SchI GAGTC 1 cut(s) 5
SduI GDGCHC 1 cut(s) 254
SetI ASST 3 cut(s) 221, 263, 323
Sse9I AATT 3 cut(s) 201, 312, 328
SsiI CCGC 1 cut(s) 174
TaaI ACNGT 1 cut(s) 24
TaqI TCGA 1 cut(s) 111
TasI AATT 3 cut(s) 201, 312, 328
TfiI GAWTC 2 cut(s) 89, 113
Tru1I TTAA 4 cut(s) 26, 126, 215, 311
Tru9I TTAA 4 cut(s) 26, 126, 215, 311
TscAI CASTG 1 cut(s) 137
TseFI GTSAC 1 cut(s) 15
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 15
TspDTI ATGAA 2 cut(s) 200, 341
TspRI CASTG 1 cut(s) 137
XapI RAATTY 1 cut(s) 328
XcmI CCANNNNNNNNNTGG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.