Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000831

Physical Location & Seq

Genomic Coordinates Reverse (-)

39295537 .. 39296006

Gene Structure 470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49760

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGACTGGAACTGCAACATCTGAAAGCACAGAAGTTGAAAGCATAGACAAGATTAAAGTTACAATTGTCCCCACAAACAAGCCTATGATAAGAAAGGATGAGTCTGATGTAGTTTTCAGGGCAGCTATAGGTAAATGGCGGGCAGCTGTAGTAGAGATTTCTAGAATGCACAAAACAGGTCGCCCTGTACTCGTTGGCACAACCAGTGTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071806 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SecA_DEAD SecA_PP_bind SecA_SW

Protein Analysis

71

Amino Acids

7.76

Weight (kDa)

9.3

Isoelectric Point (pI)

32.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P-loop_SecA	PF21090	28 - 71	2.7e-11	SecA P-loop domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11980
fragaria_vesca	FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080 FvH4_5g01080
malus_domestica	MD04G1073000.v1.1
prunus_persica	Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1 Prupe.5G084800_v2.0.a1
pyrus_communis	pycom04g06610
rosa_chinensis	RchiOBHm_Chr0c37g0502981 RchiOBHm_Chr1g0341841 RchiOBHm_Chr2g0125491 RchiOBHm_Chr4g0403961 RchiOBHm_Chr4g0425481 RchiOBHm_Chr6g0265101 RchiOBHm_Chr6g0265181 RchiOBHm_Chr7g0200241
rosa_laevigata	RLG00000001516 RLG00000002981 RLG00000003741 RLG00000013747 RLG00000016807
rosa_multiflora	Rmu_sc0003776.1_g000038 Rmu_sc0006398.1_g000015 Rmu_sc0019284.1_g000002
rosa_roxburghii	Rroxscaffold_3G00233480 Rroxscaffold_3G00233540 Rroxscaffold_3G00256200 Rroxscaffold_5G00387730 Rroxscaffold_6G00396100
rosa_rugosa	Rorug01G0208200 Rorug01G0280900 Rorug01G0418600 Rorug02G0279000 Rorug04G0081200 Rorug05G0323800 Rorug05G0574400 Rorug07G0058700
rosa_samantha	Rh1AG260600 Rh1BG135400 Rh1BG136300 Rh1CG070000 Rh1DG074600 Rh2AG365800 Rh2AG365900 Rh2BG539700 Rh3BG097600 Rh4AG421000 Rh4BG432900 Rh5AG197000 Rh5AG320000 Rh5BG196900 Rh5CG106200 Rh6AG247800 Rh6BG133700 Rh6CG132200 Rh6CG525100 Rh6DG119400 Rh7AG144000 Rh7AG184200 Rh7AG200500 Rh7BG186900 Rh7CG194600 Rh7DG188300
rosa_wichuraiana	Rw5G029930 Rw7G016120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	139
AfaI	GTAC	1 cut(s)	189
AgsI	TTSAA	1 cut(s)	38
AluBI	AGCT	2 cut(s)	125, 146
AluI	AGCT	2 cut(s)	125, 146
ApeKI	GCWGC	2 cut(s)	122, 143
BbvI	GCAGC	2 cut(s)	134, 155
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	2 cut(s)	126, 147
BisI	GCNGC	2 cut(s)	123, 144
BlsI	GCNGC	2 cut(s)	124, 145
Bse1I	ACTGG	2 cut(s)	10, 204
BseGI	GGATG	1 cut(s)	103
BseNI	ACTGG	2 cut(s)	10, 204
BseXI	GCAGC	2 cut(s)	134, 155
BslFI	GGGAC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	171
BspACI	CCGC	1 cut(s)	139
BsrI	ACTGG	2 cut(s)	10, 204
BstC8I	GCNNGC	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	103
BstSFI	CTRYAG	2 cut(s)	126, 147
BstV1I	GCAGC	2 cut(s)	134, 155
BtsCI	GGATG	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	188
CviJI	RGCY	3 cut(s)	82, 125, 146
CviKI_1	RGCY	3 cut(s)	82, 125, 146
CviQI	GTAC	1 cut(s)	188
FaiI	YATR	3 cut(s)	44, 86, 128
FaqI	GGGAC	1 cut(s)	53
FauI	CCCGC	1 cut(s)	132
Fnu4HI	GCNGC	2 cut(s)	123, 144
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	2 cut(s)	123, 144
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	2 cut(s)	123, 144
HinfI	GANTC	1 cut(s)	101
Hpy188I	TCNGA	2 cut(s)	22, 106
Hpy188III	TCNNGA	1 cut(s)	162
HpyCH4V	TGCA	2 cut(s)	14, 169
LpnPI	CCDG	3 cut(s)	103, 162, 198
Lsp1109I	GCAGC	2 cut(s)	134, 155
MaeI	CTAG	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	58
MfeI	CAATTG	1 cut(s)	63
MluCI	AATT	1 cut(s)	63
MlyI	GAGTC	1 cut(s)	110
MseI	TTAA	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	146
MunI	CAATTG	1 cut(s)	63
Mva1269I	GAATGC	1 cut(s)	171
PctI	GAATGC	1 cut(s)	171
PkrI	GCNGC	2 cut(s)	124, 145
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	2 cut(s)	123, 144
SchI	GAGTC	1 cut(s)	110
SetI	ASST	4 cut(s)	127, 133, 148, 181
SfcI	CTRYAG	2 cut(s)	126, 147
SgeI	CNNG	9 cut(s)	18, 61, 91, 130, 152, 174, 189, 197, 203
Sse9I	AATT	1 cut(s)	63
SsiI	CCGC	1 cut(s)	139
SspMI	CTAG	1 cut(s)	162
TasI	AATT	1 cut(s)	63
TatI	WGTACW	1 cut(s)	187
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	2 cut(s)	122, 143
TspRI	CASTG	1 cut(s)	211
XbaI	TCTAGA	1 cut(s)	161
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.